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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053859 ID=TCONS_00053859|Name=TCONS_00053859|organism=Clytia hemisphaerica|type=transcript|length=2066bp
TTAGGCAAAAAAATATAAGCCACACAAGAAAAgataaggaaaaagaaaaa
gattttgaacaaaaaaataaagagatTGAAGAGGATTTATAGTACTATCT
TTGACCATATGGGGAACAAACTTGCAAAAAAGCAACGGAGGGAACAAGGA
GATGAGGAAAAACTGAATGGGCAAGTTCGGCTTATCTCTGTAACGAAAAA
ACGATCAACTCCTAACAGCCCGTTAAAACAACAAGAGGAATTGACCGAAC
AACTAGGCGATCACTTAATTACCACGGATGATGCTACCATACAAGTTGAG
AAAGGAATAGAAATGATAAAAACGACCAATGATGGTAATGATATTTCCGT
AGAATCTGCACAGTCAGCAGAAATCGGGAACGCCCCGACAATTTccaatg
aagtatcaaacttgaTAGAAAATGATGACACTCCTCGTATTAAGGAAATA
CTGATAAATGAAGAATCAGATTCGAAAACAATCGATATTTCAACTCCAAA
TACAGATGAAATTATATCATCGAAACTGGAAGAAAAGGACTCAAATCCTC
CTCTTCCCAAGATACAAATTGATCTTGATCAACCAGTTTCGGAGAGCCTC
GATTCACCAGACAATATCAATAGTAACTGCAATACCAAACAGTCATCCGA
TGACGAGAATCATATAGAAGAAGACCTTGAAACAAATCAAGAGAACACTA
TTGAAGCTTTAGAATCTGGTGAAATTCAAGTTTACCTACAAACAAATGAA
GACTACATTGTACAATTTTATGATTCAATTTTAGCTGATGCTTTTAATGA
AGTGATAGATTTTAAACGTAAAGATAGCCAGGTCTCGCATACTGGCTTTG
ATAACAACACCACACCTGCAAGGCCAGATTCGGGGTACGAGCTTGCCTCA
AGGGGGAACAGACACCATAGTTCTAAAGATAATCACCACATTGATAATAG
TGAGAACATTAGAGACACAGGAAAAAACATAACATCTCACAATACAGTGA
TTATACCGAAAGAAGGTTGTTTGAATTCTATAGACAAAGAccttgaaaat
tttgaggagAATGCTGAACCATCGCTCACCACCAAACTacgaaaagaaat
tttggaattttcagAACAACTCTCGATCGATATTCTAAATCATGTTAGAC
TAGCTTTGAGTTAAATGTCAGCAACNTGGAATTTTCAGAACAACTCTCGA
TCGATATTCTAAATCATGTTAGATTAGCTTTGAGTTAAATATAGCGTTCA
AGCAACCACCATCTGAACACCCCTGTGCCACGGACCcgttgggaccccag
ccccactggaaaactaagcaaaaatttcgtcctcgGTGGGAAAATATCCT
TGATTTTCAGCTCCAcagggaaattgactttgatttcatccccactcgaa
attccatgtttaaaaattgcactccaaaaccatcctcactgagtttttta
accttggaacaatggaatttctatccccattgggatttcgataggaattt
ttatccccaatgAGGAataaagttccaccggggctgtgcgGCAGGGGTGT
ATCTGACATCCATAACTAGTTAAATTGAGCTCAAGTATTGCAAGTTttct
ggcatccactaacggattcgtgatCCTTATACTACTTgcagttttgtaga
ggtctgtgctTCATATTAGACGATCTCGAGTTACAATCTccttcgaaata
tattgagattttactgtactttaacgtttttcagaatttaaagttagggc
gagaattgctattttagcacttccactttcttccattgaatatatcgatt
ttagaggggtttgctGGCTTctaggcccggggggggggcagttaggcaaa
ttgaccgacggacggcggttaagggtatgtttttcaaaatatcagaaatg
cactgtaagggtggacttttgagaaatgcactgtaagggtggaaatttca
gcaaatctgggaagaATTTACAAGCTAGGAagaattgcaaatttttgctc
gaaaatgttgatttttttgctctaaaagagtttaaaatttgaaaaaatgc
actgtaagggtatgaa Run BLAST on NCBI protein sequence of TCONS_00053859-protein >TCONS_00053859-protein ID=TCONS_00053859-protein|Name=TCONS_00053859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MGNKLAKKQRREQGDEEKLNGQVRLISVTKKRSTPNSPLKQQEELTEQLG
DHLITTDDATIQVEKGIEMIKTTNDGNDISVESAQSAEIGNAPTISNEVS
NLIENDDTPRIKEILINEESDSKTIDISTPNTDEIISSKLEEKDSNPPLP
KIQIDLDQPVSESLDSPDNINSNCNTKQSSDDENHIEEDLETNQENTIEA
LESGEIQVYLQTNEDYIVQFYDSILADAFNEVIDFKRKDSQVSHTGFDNN
TTPARPDSGYELASRGNRHHSSKDNHHIDNSENIRDTGKNITSHNTVIIP
KEGCLNSIDKDLENFEENAEPSLTTKLRKEILEFSEQLSIDILNHVRLAL
S Run BLAST on NCBI transcript from alignment at scaffold_234:56512..58577 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053859 ID=TCONS_00053859|Name=TCONS_00053859|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_234:56512..58577 (Clytia hemisphaerica)
ttcatacccttacagtgcattttttcaaattttaaactcttttagagcaa
aaaaatcaacattttcgagcaaaaatttgcaattctTCCTAGCTTGTAAA
Ttcttcccagatttgctgaaatttccacccttacagtgcatttctcaaaa
gtccacccttacagtgcatttctgatattttgaaaaacatacccttaacc
gccgtccgtcggtcaatttgcctaactgccccccccccgggcctagAAGC
Cagcaaacccctctaaaatcgatatattcaatggaagaaagtggaagtgc
taaaatagcaattctcgccctaactttaaattctgaaaaacgttaaagta
cagtaaaatctcaatatatttcgaaggAGATTGTAACTCGAGATCGTCTA
ATATGAagcacagacctctacaaaactgcAAGTAGTATAAGGatcacgaa
tccgttagtggatgccagaaAACTTGCAATACTTGAGCTCAATTTAACTA
GTTATGGATGTCAGATACACCCCTGCcgcacagccccggtggaactttat
TCCTcattggggataaaaattcctatcgaaatcccaatggggatagaaat
tccattgttccaaggttaaaaaactcagtgaggatggttttggagtgcaa
tttttaaacatggaatttcgagtggggatgaaatcaaagtcaatttccct
gTGGAGCTGAAAATCAAGGATATTTTCCCACcgaggacgaaatttttgct
tagttttccagtggggctggggtcccaacgGGTCCGTGGCACAGGGGTGT
TCAGATGGTGGTTGCTTGAACGCTATATTTAACTCAAAGCTAATCTAACA
TGATTTAGAATATCGATCGAGAGTTGTTCTGAAAATTCCANGTTGCTGAC
ATTTAACTCAAAGCTAGTCTAACATGATTTAGAATATCGATCGAGAGTTG
TTctgaaaattccaaaatttcttttcgtAGTTTGGTGGTGAGCGATGGTT
CAGCATTctcctcaaaattttcaaggTCTTTGTCTATAGAATTCAAACAA
CCTTCTTTCGGTATAATCACTGTATTGTGAGATGTTATGTTTTTTCCTGT
GTCTCTAATGTTCTCACTATTATCAATGTGGTGATTATCTTTAGAACTAT
GGTGTCTGTTCCCCCTTGAGGCAAGCTCGTACCCCGAATCTGGCCTTGCA
GGTGTGGTGTTGTTATCAAAGCCAGTATGCGAGACCTGGCTATCTTTACG
TTTAAAATCTATCACTTCATTAAAAGCATCAGCTAAAATTGAATCATAAA
ATTGTACAATGTAGTCTTCATTTGTTTGTAGGTAAACTTGAATTTCACCA
GATTCTAAAGCTTCAATAGTGTTCTCTTGATTTGTTTCAAGGTCTTCTTC
TATATGATTCTCGTCATCGGATGACTGTTTGGTATTGCAGTTACTATTGA
TATTGTCTGGTGAATCGAGGCTCTCCGAAACTGGTTGATCAAGATCAATT
TGTATCTTGGGAAGAGGAGGATTTGAGTCCTTTTCTTCCAGTTTCGATGA
TATAATTTCATCTGTATTTGGAGTTGAAATATCGATTGTTTTCGAATCTG
ATTCTTCATTTATCAGTATTTCCTTAATACGAGGAGTGTCATCATTTTCT
AtcaagtttgatacttcattggAAATTGTCGGGGCGTTCCCGATTTCTGC
TGACTGTGCAGATTCTACGGAAATATCATTACCATCATTGGTCGTTTTTA
TCATTTCTATTCCTTTCTCAACTTGTATGGTAGCATCATCCGTGGTAATT
AAGTGATCGCCTAGTTGTTCGGTCAATTCCTCTTGTTGTTTTAACGGGCT
GTTAGGAGTTGATCGTTTTTTCGTTACAGAGATAAGCCGAACTTGCCCAT
TCAGTTTTTCCTCATCTCCTTGTTCCCTCCGTTGCTTTTTTGCAAGTTTG
TTCCCCATATGGTCAAAGATAGTACTATAAATCCTCTTCAatctctttat
ttttttgttcaaaatctttttctttttccttatcTTTTCTTGTGTGGCTT
ATATTTTTTTGCCTAA Coding sequence (CDS) from alignment at scaffold_234:56512..58577 >TCONS_00053859 ID=TCONS_00053859|Name=TCONS_00053859|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_234:56512..58577 (Clytia hemisphaerica)
TTAACTCAAAGCTAGTCTAACATGATTTAGAATATCGATCGAGAGTTGTT
ctgaaaattccaaaatttcttttcgtAGTTTGGTGGTGAGCGATGGTTCA
GCATTctcctcaaaattttcaaggTCTTTGTCTATAGAATTCAAACAACC
TTCTTTCGGTATAATCACTGTATTGTGAGATGTTATGTTTTTTCCTGTGT
CTCTAATGTTCTCACTATTATCAATGTGGTGATTATCTTTAGAACTATGG
TGTCTGTTCCCCCTTGAGGCAAGCTCGTACCCCGAATCTGGCCTTGCAGG
TGTGGTGTTGTTATCAAAGCCAGTATGCGAGACCTGGCTATCTTTACGTT
TAAAATCTATCACTTCATTAAAAGCATCAGCTAAAATTGAATCATAAAAT
TGTACAATGTAGTCTTCATTTGTTTGTAGGTAAACTTGAATTTCACCAGA
TTCTAAAGCTTCAATAGTGTTCTCTTGATTTGTTTCAAGGTCTTCTTCTA
TATGATTCTCGTCATCGGATGACTGTTTGGTATTGCAGTTACTATTGATA
TTGTCTGGTGAATCGAGGCTCTCCGAAACTGGTTGATCAAGATCAATTTG
TATCTTGGGAAGAGGAGGATTTGAGTCCTTTTCTTCCAGTTTCGATGATA
TAATTTCATCTGTATTTGGAGTTGAAATATCGATTGTTTTCGAATCTGAT
TCTTCATTTATCAGTATTTCCTTAATACGAGGAGTGTCATCATTTTCTAt
caagtttgatacttcattggAAATTGTCGGGGCGTTCCCGATTTCTGCTG
ACTGTGCAGATTCTACGGAAATATCATTACCATCATTGGTCGTTTTTATC
ATTTCTATTCCTTTCTCAACTTGTATGGTAGCATCATCCGTGGTAATTAA
GTGATCGCCTAGTTGTTCGGTCAATTCCTCTTGTTGTTTTAACGGGCTGT
TAGGAGTTGATCGTTTTTTCGTTACAGAGATAAGCCGAACTTGCCCATTC
AGTTTTTCCTCATCTCCTTGTTCCCTCCGTTGCTTTTTTGCAAGTTTGTT
CCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053859-exon-scaffold_234-1491911889:56512..58577 | TCONS_00053859-exon-scaffold_234-1491911889:56512..58577 | Clytia hemisphaerica | exon |
| TCONS_00053859-exon-scaffold_234-1510915933:56512..58577 | TCONS_00053859-exon-scaffold_234-1510915933:56512..58577 | Clytia hemisphaerica | exon |
| TCONS_00053859-exon-scaffold_234-1575043694:56512..58577 | TCONS_00053859-exon-scaffold_234-1575043694:56512..58577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:56512..58577 . |
Blast
The following BLAST results are available for this feature:
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