TCONS_00053858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053858
Unique NameTCONS_00053858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053858 ID=TCONS_00053858|Name=TCONS_00053858|organism=Clytia hemisphaerica|type=transcript|length=2830bp
CTTTCCCTCCCTTCCctctgaaaaatattaaacaatgAAGGCAACCATTT
ATAAATATATGATAATGATTAAAttctttattgaaaatagatataaaaaa
taaaaatgggggatgacaacaaaagaaaactCAACCTGGAAGATGAAATG
AACAGGTTTGAGCAGGAGATTTCTGGCAATCTCCCTCCTCCACCAAAAAT
GCCAAAGATGCCCAACATGATGGGTCCACCTGGCTTCATGGGCCGTCCTC
CCATGCCCCCTCCACCATTCATGAACCAAAACCGTAATGGTAGTGGAGGG
CTGCCACCCATGTCATTCCCTCCTGGTCCCCCTCCTCAGATGCCACCAAA
TATGTTTGGGGGACCACCAGGTGGCCTACCACCACCACCGGCAATGCGTG
GTCTCCCTGTTCCTCCACCAATGATGGTCCCTCCTCCCATGATGCCAATG
CCGATTCCTCCAATGGCGATGCCCTCATCTGCGCCAGGAAACAATTTTGG
TGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATCTGTTT
CAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCGGTGGG
GGTGGTggtgaaaagaagaagaaagataagAAGAAGACGGTTGTTCGTGT
GGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGATCCTA
ATGATTTCCGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGAC
CACCTTCTTCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGT
CGTTCGTGATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCT
TCAAAGATCCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTAAA
TACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAATTGGAAAGATCG
AAACATCATGACagcaaagaagaaagaaaaggaaaagaagaagcTTGGCT
TACGGTGAAAGTTTGGGGATCTGCAAGTACACGTTGACCTGATTTGGCCG
agattattattttttcctcGATCGTAGCTTCGAGAAGAATACAATCGATT
TTCACATCGTATTGTTGTTGAGATGAAATAGATTGAGATGACAGTTCCAG
TTTTTTCCAATTCTAGTTTTTGGCTTATTATTTGAAGCTGGATTCACATA
GTCATTGAATATGCAATGGTTGCGTGCTATACAATATTATGTTGTAGGCG
AAGATATGGTGTTAGTCAAAGCTAATTGAACTTTATATCGCAGTATGTTT
TCCTAGTTGGCTAAatcaataaacaaaacaatcgaGTAATTATAAAGGGG
CGAACGTTGACTACTCCCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAA
CTtcttgaaatcaaaattgattaagattttttttttccattaccTCAAAT
GTACTTCACTTAATATCGTTGAAacctttttgtatattttttctaaTAAT
TTGGCATTTGGAGTTCTAAATCCTACAAAACTTCGAATCTATGGAAAAAG
AGATATCTGGGGTGACATGGTCGTTTAGcatttttaacttgtttttttat
gtGGACGTTTTTAGGATAATTTGAAGAATATAAACTACGGTATTTTCATT
CTATCTTGCTTTTTCTATCCAAATTCCCAGATATCaatttttatgggttt
ttttCTGAGTTTTTATACAGTGCGGTCAGCCATTATTGGAAAAACTTTAA
TATactggtaaaaaattatttttacttgaGTATCACctaatggaaatttt
gaaataatggcAAATCTTTTCAATTATCTAGTCGAAGTCAAAGTATTGTG
AGTTTATTTCAATGACTTTTCTTATTCGAccgaaaaataatcaaatacag
GATTTATAACGACAAAATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGG
CAACCTTTTCCTAAACGGTAACCACAACTAAAGAACTATATTTATCCTAA
AATCGGTAATTTCTTTGGATTTAATCATTTGTGTAAATGTAGgaagaatt
atcttttcaagctttcgaaaaaagcttttttgattACTTTCTAAAGATTG
ATAAATTGGAAAccaattttggaaaattaaaaGACCAGGTCTCGGTCCCT
CGTATATGAAATATTGAGATAACactaattttcattaaaaaaaatatatt
atttttttggtaaaatattaATTAGTTAGGCTCATATTTTATTCTATAAC
TCATTGccctatttttttttcaacaaaggGCGCTCTACAGGACCGTGGAG
TAAGCTTTATATTTTTCATCAGTAATATATTCAAGGTTTTGCTGAACAGA
CGATTCATTACAAAGTAATATGTGAgttacaaaaaaaatcacacaagTTT
TTTTGAGAATGGTGAATTTGTGCtatgttattttactttttaatcTTTAC
TTGGTGTTCTTGACTTGTGTAACCTCAAATGAAGGTAAATGCTTCTTTAA
TGggcagtctgttcctctaaagaatcctgcattgtaaacacgcatgcgta
gtatgtcgttctttaaaccatatgtagttaattcctgTGATAAGCAAAGA
GGAATGGATACGTAGGGGTGGTGCAggcactttcggtcggggttgggGAT
GTCAACATTTGTCGCTCTTTCATGAAATCTGTCGTTCTTTAAGTAAATGC
AGGATTATTTAGATAAATCCCCTCTGGGCAATTTCCTACTTTATAAAAGG
GCTTAATTTTATTCAATAATAACATAATATCATCTATACATACATTGCTA
AATTTATTTGGATGTAACATACGATTTATC
Run BLAST on NCBI

transcript from alignment at scaffold_234:519486..525349-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053858 ID=TCONS_00053858|Name=TCONS_00053858|organism=Clytia hemisphaerica|type=transcript|length=5864bp|location=Sequence derived from alignment at scaffold_234:519486..525349- (Clytia hemisphaerica)
CTTTCCCTCCCTTCCCTCTGAAAAATATTAAACAATGAAGGCAACCATTT ATAAATATATGATAATGATTAAATTCTTTATTGAAAATAGATATAAAAAA TAAAAATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGAAATG AACAGGTATTCATGCCATGTGTGTTATAATTTGTGTAGTCTTTCTGGATA TCATGATCTTCTCACAACCCTTATTAAAAACTTTTATTCCCTTACAACAC TTTGAAATTTATCGATTTTGATGGTTAAGATAATGAAGGTTTCGGTTTTT GCAACGCAATGCTTTTCTGTTTCATCATTATGACGAACATGATAAATCCA TTATTACACCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATT GACACTTCCCCTCAAGGATTTTTGTTTTAATTTTCATAAATTGTGAATGT ACAGTCTGGTGGCTGATATTTTATGGTAGACTATATTTTTCCACTTTTAG CCACCAAAATGTACTTTTTTCAAAAAAAACTTACTTAGCCTATTTCTTGT TGTATTTACTATGTATTGGTAAAGTTTCGCATTTATATTGAAAATATTTT TAGAGTTATTGAGAAAAATGTGTTTTTGTTGATTTTTTGATACTTCACAC AATTTTTGACTGGCATCTTATCTAGGTTTGAGCAGGAGATTTCTGGCAAT CTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCACC TGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCAAA ACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTCCC CCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTACC ACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGTCC CTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCATCT GCGCCAGGTAAATTTTAGTACCCTTTTTTTCAGCTACCCTTCCTTTCGGG ACAATTAAAACTATAATATAGTAGACCCCCAATCTAGTAGACTTTACATT ATAGTGAGCCTTTTCAGAAACTTATTCAATTGTCAAGGGTAGAGGGGAAA ACAAAATATCTGAATGACTCCAAATGAGAGTAAACATAATTGGATAACAT AAGAAAACCTCAACATCTTTCGTTAGATTGTATAGGTATCACATAGTTCA TGATTCAGAATAAATATATTTATTAGAAAACCACAGTTCTGCTGCCTTTT AAGGTGTGACGAAACATTCTGAATTTTGTTATAAAAATACTTGAAGGTTG AAGAACCTGCTGCCAACAATATTCCTATCATTAATTTTATAGGAAACAAT TTTGGTGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATC TGTTTCAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCG GTGGGGGTGGTGGTGAAAAGAAGAAGAAAGATAAGAAGAAGACGGTTGTT CGTGTGGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGA TCCTAGTAAGTCTTGAATTGTTTATAATTTTTTGAGACTACATTCTTTAA ATTAGGGCGTGGTTTCTACCTTAGAATAATAAAATTGTAGTATTATAAAA TATACTATCGACCCTTGCCATAGAAGCTGTTGGACCTGGTTTGACATACA TCCAATACTTCAACTCATTCATTTTACGGTGTTTAATTTGATCAGACAAA TTATATAGATCTATTAAAATCTCTGTGAATCCTCTGGAATACTACCAATT TTTTTAACCTCTATTTTTTTACGACTTTAAGAGGAAGGGACCACTTCTCA GCCTACAAGTTCATTGTTCTAAAATCCTTCTTCCATTTTCAGATGATTTC CGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGACCACCTTCT TCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGTCGTTCGTG ATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCTTCAAAGAT CCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTCAGTAAAAAAT GGTCGAATTTTGAATACAATTGGATGTCTCCAAAACTCAAACACTGACGA AGAACTTAAATTTGTTNTTTAATAATATTGGATGTCTCCGAAACTCAAAC ACTGACGAAGAACTCAAATTTGTTCGAGTTATGAAGACTAGATTATAAGG CATTGTTAACTTAAGGGGCAAGAAAAATTGTTCGAATTAAGGTGACATTT GAGAGAGGTTCGAATTCTGGAGACTTCAGACGAGTTCATTGTAGGTTTTA TAAGAAAAGACCATGAATTTTTTTAAATTTCAACATGGTATAAAAGTCAG TTTTTTTCAAATAGCTTTCGAACTACTTTTTCAAATTTAATGTATGATAG CTCAAAATTCAAGTAAGATCATCCTCTATACCATAAAATAAGAATAAACT AAAAATTTAAATCTAGAAGTTCACAATATCTCGACAAACTTGTATACTTT TTTTTGGTGCACCCGATATAAAATTATGTTAACATTCGTACTTACTATAG CCGGGAAGGAGAGAAGTTGTTTTCATTTTTATGGAAATGCTGTATAAGCA GATAGGAGATACTCTTGGGTACCTAATAAACGGGGGGTTAGTGCGGGTGG AAAAATTCTCGAAATTTAATAAGCGGGGAGAGGGTTGGAATGAAAATATC CTGGAAAATTCCTTAAAAGGAGGCTAAAGGCTTGGGGACACGAGAAGTTT TTTTCGCGTCGGTGCAATGCAACATGCTCTTTCCCACCAACACAAGAAAA AAGGTGTCTACACGGTTTCTTTTTTGTTTCATTGGACAAAAAGTGAAGGA AATACCCTCAAAGAGAGTACTTTAATTTAAACGATGTCATTTTATAAAGA TTCCTAATAAATTCTCAATTTATTCACAGGTAAATACGTTGGTAACAGAC CAATCAAGTTACGCAAAAGTAATTGGAAAGATCGAAACATCATGACAGCA AAGAAGAAAGAAAAGGAAAAGAAGAAGCTTGGCTTACGGTGAAAGTTTGG GGATCTGCAAGTACACGTTGACCTGATTTGGCCGAGATTATTATTTTTTC CTCGATCGTAGCTTCGAGAAGAATACAATCGATTTTCACATCGTATTGTT GTTGAGATGAAATAGATTGAGATGACAGTTCCAGTTTTTTCCAATTCTAG TTTTTGGCTTATTATTTGAAGCTGGATTCACATAGTCATTGAATATGCAA TGGTTGCGTGCTATACAATATTATGTTGTAGGCGAAGATATGGTGTTAGT CAAAGCTAATTGAACTTTATATCGCAGTATGTTTTCCTAGTTGGCTAAAT CAATAAACAAAACAATCGAGTAATTATAAAGGGGCGAACGTTGACTACTC CCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAACTTCTTGAAATCAAAA TTGATTAAGATTTTTTTTTTCCATTACCTCAAATGTACTTCACTTAATAT CGTTGAAACCTTTTTGTATATTTTTTCTAATAATTTGGCATTTGGAGTTC TAAATCCTACAAAACTTCGAATCTATGGAAAAAGAGATATCTGGGGTGAC ATGGTCGTTTAGCATTTTTAACTTGTTTTTTTATGTGGACGTTTTTAGGA TAATTTGAAGAATATAAACTACGGTATTTTCATTCTATCTTGCTTTTTCT ATCCAAATTCCCAGATATCAATTTTTATGGGTTTTTTTCTGAGTTTTTAT ACAGTGCGGTCAGCCATTATTGGAAAAACTTTAATATACTGGTAAAAAAT TATTTTTACTTGAGTATCACCTAATGGAAATTTTGAAATAATGGCAAATC TTTTCAATTATCTAGTCGAAGTCAAAGTATTGTGAGTTTATTTCAATGAC TTTTCTTATTCGACCGAAAAATAATCAAATACAGGATTTATAACGACAAA ATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGGCAACCTTTTCCTAAAC GGTAACCACAACTAAAGAACTATATTTATCCTAAAATCGGTAATTTCTTT GGATTTAATCATTTGTGTAAATGTAGGAAGAATTATCTTTTCAAGCTTTC GAAAAAAGCTTTTTTGATTACTTTCTAAAGATTGATAAATTGGAAACCAA TTTTGGAAAATTAAAAGACCAGGTCTCGGTCCCTCGTATATGAAATATTG AGATAACACTAATTTTCATTAAAAAAAATATATTATTTTTTTGGTAAAAT ATTAATTAGTTAGGCTCATATTTTATTCTATAACTCATTGCCCTATTTTT TTTTCAACAAAGGGCGCTCTACAGGACCGTGGAGTAAGCTTTATATTTTT CATCAGTAATATATTCAAGGTTTTGCTGAACAGACGATTCATTACAAAGT AATATGTGAGTTACAAAAAAAATCACACAAGTTTTTTTGAGAATGGTGAA TTTGTGCTATGTTATTTTACTTTTTAATCTTTACTTGGTGTTCTTGACTT GTGTAACCTCAAATGAAGGTAAATGCTTCTTTAATGGGCAGTCTGTTCCT CTAAAGAATCCTGCATTGTAAACACGCATGCGTAGTATGTCGTTCTTTAA ACCATATGTAGTTAATTCCTGTGATAAGCAAAGAGGAATGGATACGTAGG GGTGGTGCAGGCACTTTCGGTCGGGGTTGGGGATGTCAACATTTGTCGCT CTTTCATGAAATCTGTCGTTCTTTAAGTAAATGCAGGATTATTTAGATAA ATCCCCTCTGGGCAATTTCCTACTTTATAAAAGGGCTTAATTTTATTCAA TAATAACATAATATCATCTATACATACATTGCTAAATTTATTTGGATGTA ACATACGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033987XLOC_033987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053858-exon-scaffold_234-1575043694:525195..525349TCONS_00053858-exon-scaffold_234-1575043694:525195..525349Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1575043694:523443..523774TCONS_00053858-exon-scaffold_234-1575043694:523443..523774Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1575043694:522845..523057TCONS_00053858-exon-scaffold_234-1575043694:522845..523057Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1575043694:522313..522507TCONS_00053858-exon-scaffold_234-1575043694:522313..522507Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1575043694:519486..521420TCONS_00053858-exon-scaffold_234-1575043694:519486..521420Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1510915933:525195..525349TCONS_00053858-exon-scaffold_234-1510915933:525195..525349Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1510915933:523443..523774TCONS_00053858-exon-scaffold_234-1510915933:523443..523774Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1510915933:522845..523057TCONS_00053858-exon-scaffold_234-1510915933:522845..523057Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1510915933:522313..522507TCONS_00053858-exon-scaffold_234-1510915933:522313..522507Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1510915933:519486..521420TCONS_00053858-exon-scaffold_234-1510915933:519486..521420Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1491911889:525195..525349TCONS_00053858-exon-scaffold_234-1491911889:525195..525349Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1491911889:523443..523774TCONS_00053858-exon-scaffold_234-1491911889:523443..523774Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1491911889:522845..523057TCONS_00053858-exon-scaffold_234-1491911889:522845..523057Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1491911889:522313..522507TCONS_00053858-exon-scaffold_234-1491911889:522313..522507Clytia hemisphaericaexon
TCONS_00053858-exon-scaffold_234-1491911889:519486..521420TCONS_00053858-exon-scaffold_234-1491911889:519486..521420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:519486..525349 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.1762 12.7682 18.9958 21.5462 44.5742 35.2105 25.3766 29.9859 17.6378 21.0072 17.1559 12.8972 11.4797 16.3421 12.6257 14.3558 16.6509 15.0063 5.32989 3.49252 12.735 12.7287 16.6394 15.063 10.8121 11.5664 6.27344 5.70478 12.2768 13.6691
Blast
BLAST of TCONS_00053858 vs. Swiss-Prot (Human)
Match: RBM42 (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.028e-37
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1
Query:  640 VVRVAGSSVWEDDSLLDWDPNDFRIFVGDLGNEVSDDHLLRAFSKYPSLNXXXXXXXXXXXXXXGYGFVSFKDPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAXXXXXXXXXLGLR 1005
             +R A  S WED SLL+WD +DFRIF GDLGNEV+DD L RAFS++PS  K++V+RDKR+ KTKGYGFVSFKDP DY++AMREMNGKYVG+RPIKLRKS WKDRN+   +KK+KEKKKLGLR
Sbjct:  359 CIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480          
The following BLAST results are available for this feature:
BLAST of TCONS_00053858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM421.028e-3772.13RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
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