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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053858 ID=TCONS_00053858|Name=TCONS_00053858|organism=Clytia hemisphaerica|type=transcript|length=2830bp CTTTCCCTCCCTTCCctctgaaaaatattaaacaatgAAGGCAACCATTT ATAAATATATGATAATGATTAAAttctttattgaaaatagatataaaaaa taaaaatgggggatgacaacaaaagaaaactCAACCTGGAAGATGAAATG AACAGGTTTGAGCAGGAGATTTCTGGCAATCTCCCTCCTCCACCAAAAAT GCCAAAGATGCCCAACATGATGGGTCCACCTGGCTTCATGGGCCGTCCTC CCATGCCCCCTCCACCATTCATGAACCAAAACCGTAATGGTAGTGGAGGG CTGCCACCCATGTCATTCCCTCCTGGTCCCCCTCCTCAGATGCCACCAAA TATGTTTGGGGGACCACCAGGTGGCCTACCACCACCACCGGCAATGCGTG GTCTCCCTGTTCCTCCACCAATGATGGTCCCTCCTCCCATGATGCCAATG CCGATTCCTCCAATGGCGATGCCCTCATCTGCGCCAGGAAACAATTTTGG TGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATCTGTTT CAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCGGTGGG GGTGGTggtgaaaagaagaagaaagataagAAGAAGACGGTTGTTCGTGT GGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGATCCTA ATGATTTCCGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGAC CACCTTCTTCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGT CGTTCGTGATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCT TCAAAGATCCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTAAA TACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAATTGGAAAGATCG AAACATCATGACagcaaagaagaaagaaaaggaaaagaagaagcTTGGCT TACGGTGAAAGTTTGGGGATCTGCAAGTACACGTTGACCTGATTTGGCCG agattattattttttcctcGATCGTAGCTTCGAGAAGAATACAATCGATT TTCACATCGTATTGTTGTTGAGATGAAATAGATTGAGATGACAGTTCCAG TTTTTTCCAATTCTAGTTTTTGGCTTATTATTTGAAGCTGGATTCACATA GTCATTGAATATGCAATGGTTGCGTGCTATACAATATTATGTTGTAGGCG AAGATATGGTGTTAGTCAAAGCTAATTGAACTTTATATCGCAGTATGTTT TCCTAGTTGGCTAAatcaataaacaaaacaatcgaGTAATTATAAAGGGG CGAACGTTGACTACTCCCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAA CTtcttgaaatcaaaattgattaagattttttttttccattaccTCAAAT GTACTTCACTTAATATCGTTGAAacctttttgtatattttttctaaTAAT TTGGCATTTGGAGTTCTAAATCCTACAAAACTTCGAATCTATGGAAAAAG AGATATCTGGGGTGACATGGTCGTTTAGcatttttaacttgtttttttat gtGGACGTTTTTAGGATAATTTGAAGAATATAAACTACGGTATTTTCATT CTATCTTGCTTTTTCTATCCAAATTCCCAGATATCaatttttatgggttt ttttCTGAGTTTTTATACAGTGCGGTCAGCCATTATTGGAAAAACTTTAA TATactggtaaaaaattatttttacttgaGTATCACctaatggaaatttt gaaataatggcAAATCTTTTCAATTATCTAGTCGAAGTCAAAGTATTGTG AGTTTATTTCAATGACTTTTCTTATTCGAccgaaaaataatcaaatacag GATTTATAACGACAAAATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGG CAACCTTTTCCTAAACGGTAACCACAACTAAAGAACTATATTTATCCTAA AATCGGTAATTTCTTTGGATTTAATCATTTGTGTAAATGTAGgaagaatt atcttttcaagctttcgaaaaaagcttttttgattACTTTCTAAAGATTG ATAAATTGGAAAccaattttggaaaattaaaaGACCAGGTCTCGGTCCCT CGTATATGAAATATTGAGATAACactaattttcattaaaaaaaatatatt atttttttggtaaaatattaATTAGTTAGGCTCATATTTTATTCTATAAC TCATTGccctatttttttttcaacaaaggGCGCTCTACAGGACCGTGGAG TAAGCTTTATATTTTTCATCAGTAATATATTCAAGGTTTTGCTGAACAGA CGATTCATTACAAAGTAATATGTGAgttacaaaaaaaatcacacaagTTT TTTTGAGAATGGTGAATTTGTGCtatgttattttactttttaatcTTTAC TTGGTGTTCTTGACTTGTGTAACCTCAAATGAAGGTAAATGCTTCTTTAA TGggcagtctgttcctctaaagaatcctgcattgtaaacacgcatgcgta gtatgtcgttctttaaaccatatgtagttaattcctgTGATAAGCAAAGA GGAATGGATACGTAGGGGTGGTGCAggcactttcggtcggggttgggGAT GTCAACATTTGTCGCTCTTTCATGAAATCTGTCGTTCTTTAAGTAAATGC AGGATTATTTAGATAAATCCCCTCTGGGCAATTTCCTACTTTATAAAAGG GCTTAATTTTATTCAATAATAACATAATATCATCTATACATACATTGCTA AATTTATTTGGATGTAACATACGATTTATC Run BLAST on NCBI transcript from alignment at scaffold_234:519486..525349- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053858 ID=TCONS_00053858|Name=TCONS_00053858|organism=Clytia hemisphaerica|type=transcript|length=5864bp|location=Sequence derived from alignment at scaffold_234:519486..525349- (Clytia hemisphaerica) CTTTCCCTCCCTTCCCTCTGAAAAATATTAAACAATGAAGGCAACCATTT
ATAAATATATGATAATGATTAAATTCTTTATTGAAAATAGATATAAAAAA
TAAAAATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGAAATG
AACAGGTATTCATGCCATGTGTGTTATAATTTGTGTAGTCTTTCTGGATA
TCATGATCTTCTCACAACCCTTATTAAAAACTTTTATTCCCTTACAACAC
TTTGAAATTTATCGATTTTGATGGTTAAGATAATGAAGGTTTCGGTTTTT
GCAACGCAATGCTTTTCTGTTTCATCATTATGACGAACATGATAAATCCA
TTATTACACCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATT
GACACTTCCCCTCAAGGATTTTTGTTTTAATTTTCATAAATTGTGAATGT
ACAGTCTGGTGGCTGATATTTTATGGTAGACTATATTTTTCCACTTTTAG
CCACCAAAATGTACTTTTTTCAAAAAAAACTTACTTAGCCTATTTCTTGT
TGTATTTACTATGTATTGGTAAAGTTTCGCATTTATATTGAAAATATTTT
TAGAGTTATTGAGAAAAATGTGTTTTTGTTGATTTTTTGATACTTCACAC
AATTTTTGACTGGCATCTTATCTAGGTTTGAGCAGGAGATTTCTGGCAAT
CTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCACC
TGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCAAA
ACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTCCC
CCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTACC
ACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGTCC
CTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCATCT
GCGCCAGGTAAATTTTAGTACCCTTTTTTTCAGCTACCCTTCCTTTCGGG
ACAATTAAAACTATAATATAGTAGACCCCCAATCTAGTAGACTTTACATT
ATAGTGAGCCTTTTCAGAAACTTATTCAATTGTCAAGGGTAGAGGGGAAA
ACAAAATATCTGAATGACTCCAAATGAGAGTAAACATAATTGGATAACAT
AAGAAAACCTCAACATCTTTCGTTAGATTGTATAGGTATCACATAGTTCA
TGATTCAGAATAAATATATTTATTAGAAAACCACAGTTCTGCTGCCTTTT
AAGGTGTGACGAAACATTCTGAATTTTGTTATAAAAATACTTGAAGGTTG
AAGAACCTGCTGCCAACAATATTCCTATCATTAATTTTATAGGAAACAAT
TTTGGTGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATC
TGTTTCAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCG
GTGGGGGTGGTGGTGAAAAGAAGAAGAAAGATAAGAAGAAGACGGTTGTT
CGTGTGGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGA
TCCTAGTAAGTCTTGAATTGTTTATAATTTTTTGAGACTACATTCTTTAA
ATTAGGGCGTGGTTTCTACCTTAGAATAATAAAATTGTAGTATTATAAAA
TATACTATCGACCCTTGCCATAGAAGCTGTTGGACCTGGTTTGACATACA
TCCAATACTTCAACTCATTCATTTTACGGTGTTTAATTTGATCAGACAAA
TTATATAGATCTATTAAAATCTCTGTGAATCCTCTGGAATACTACCAATT
TTTTTAACCTCTATTTTTTTACGACTTTAAGAGGAAGGGACCACTTCTCA
GCCTACAAGTTCATTGTTCTAAAATCCTTCTTCCATTTTCAGATGATTTC
CGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGACCACCTTCT
TCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGTCGTTCGTG
ATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCTTCAAAGAT
CCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTCAGTAAAAAAT
GGTCGAATTTTGAATACAATTGGATGTCTCCAAAACTCAAACACTGACGA
AGAACTTAAATTTGTTNTTTAATAATATTGGATGTCTCCGAAACTCAAAC
ACTGACGAAGAACTCAAATTTGTTCGAGTTATGAAGACTAGATTATAAGG
CATTGTTAACTTAAGGGGCAAGAAAAATTGTTCGAATTAAGGTGACATTT
GAGAGAGGTTCGAATTCTGGAGACTTCAGACGAGTTCATTGTAGGTTTTA
TAAGAAAAGACCATGAATTTTTTTAAATTTCAACATGGTATAAAAGTCAG
TTTTTTTCAAATAGCTTTCGAACTACTTTTTCAAATTTAATGTATGATAG
CTCAAAATTCAAGTAAGATCATCCTCTATACCATAAAATAAGAATAAACT
AAAAATTTAAATCTAGAAGTTCACAATATCTCGACAAACTTGTATACTTT
TTTTTGGTGCACCCGATATAAAATTATGTTAACATTCGTACTTACTATAG
CCGGGAAGGAGAGAAGTTGTTTTCATTTTTATGGAAATGCTGTATAAGCA
GATAGGAGATACTCTTGGGTACCTAATAAACGGGGGGTTAGTGCGGGTGG
AAAAATTCTCGAAATTTAATAAGCGGGGAGAGGGTTGGAATGAAAATATC
CTGGAAAATTCCTTAAAAGGAGGCTAAAGGCTTGGGGACACGAGAAGTTT
TTTTCGCGTCGGTGCAATGCAACATGCTCTTTCCCACCAACACAAGAAAA
AAGGTGTCTACACGGTTTCTTTTTTGTTTCATTGGACAAAAAGTGAAGGA
AATACCCTCAAAGAGAGTACTTTAATTTAAACGATGTCATTTTATAAAGA
TTCCTAATAAATTCTCAATTTATTCACAGGTAAATACGTTGGTAACAGAC
CAATCAAGTTACGCAAAAGTAATTGGAAAGATCGAAACATCATGACAGCA
AAGAAGAAAGAAAAGGAAAAGAAGAAGCTTGGCTTACGGTGAAAGTTTGG
GGATCTGCAAGTACACGTTGACCTGATTTGGCCGAGATTATTATTTTTTC
CTCGATCGTAGCTTCGAGAAGAATACAATCGATTTTCACATCGTATTGTT
GTTGAGATGAAATAGATTGAGATGACAGTTCCAGTTTTTTCCAATTCTAG
TTTTTGGCTTATTATTTGAAGCTGGATTCACATAGTCATTGAATATGCAA
TGGTTGCGTGCTATACAATATTATGTTGTAGGCGAAGATATGGTGTTAGT
CAAAGCTAATTGAACTTTATATCGCAGTATGTTTTCCTAGTTGGCTAAAT
CAATAAACAAAACAATCGAGTAATTATAAAGGGGCGAACGTTGACTACTC
CCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAACTTCTTGAAATCAAAA
TTGATTAAGATTTTTTTTTTCCATTACCTCAAATGTACTTCACTTAATAT
CGTTGAAACCTTTTTGTATATTTTTTCTAATAATTTGGCATTTGGAGTTC
TAAATCCTACAAAACTTCGAATCTATGGAAAAAGAGATATCTGGGGTGAC
ATGGTCGTTTAGCATTTTTAACTTGTTTTTTTATGTGGACGTTTTTAGGA
TAATTTGAAGAATATAAACTACGGTATTTTCATTCTATCTTGCTTTTTCT
ATCCAAATTCCCAGATATCAATTTTTATGGGTTTTTTTCTGAGTTTTTAT
ACAGTGCGGTCAGCCATTATTGGAAAAACTTTAATATACTGGTAAAAAAT
TATTTTTACTTGAGTATCACCTAATGGAAATTTTGAAATAATGGCAAATC
TTTTCAATTATCTAGTCGAAGTCAAAGTATTGTGAGTTTATTTCAATGAC
TTTTCTTATTCGACCGAAAAATAATCAAATACAGGATTTATAACGACAAA
ATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGGCAACCTTTTCCTAAAC
GGTAACCACAACTAAAGAACTATATTTATCCTAAAATCGGTAATTTCTTT
GGATTTAATCATTTGTGTAAATGTAGGAAGAATTATCTTTTCAAGCTTTC
GAAAAAAGCTTTTTTGATTACTTTCTAAAGATTGATAAATTGGAAACCAA
TTTTGGAAAATTAAAAGACCAGGTCTCGGTCCCTCGTATATGAAATATTG
AGATAACACTAATTTTCATTAAAAAAAATATATTATTTTTTTGGTAAAAT
ATTAATTAGTTAGGCTCATATTTTATTCTATAACTCATTGCCCTATTTTT
TTTTCAACAAAGGGCGCTCTACAGGACCGTGGAGTAAGCTTTATATTTTT
CATCAGTAATATATTCAAGGTTTTGCTGAACAGACGATTCATTACAAAGT
AATATGTGAGTTACAAAAAAAATCACACAAGTTTTTTTGAGAATGGTGAA
TTTGTGCTATGTTATTTTACTTTTTAATCTTTACTTGGTGTTCTTGACTT
GTGTAACCTCAAATGAAGGTAAATGCTTCTTTAATGGGCAGTCTGTTCCT
CTAAAGAATCCTGCATTGTAAACACGCATGCGTAGTATGTCGTTCTTTAA
ACCATATGTAGTTAATTCCTGTGATAAGCAAAGAGGAATGGATACGTAGG
GGTGGTGCAGGCACTTTCGGTCGGGGTTGGGGATGTCAACATTTGTCGCT
CTTTCATGAAATCTGTCGTTCTTTAAGTAAATGCAGGATTATTTAGATAA
ATCCCCTCTGGGCAATTTCCTACTTTATAAAAGGGCTTAATTTTATTCAA
TAATAACATAATATCATCTATACATACATTGCTAAATTTATTTGGATGTA
ACATACGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053858-exon-scaffold_234-1575043694:525195..525349 | TCONS_00053858-exon-scaffold_234-1575043694:525195..525349 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1575043694:523443..523774 | TCONS_00053858-exon-scaffold_234-1575043694:523443..523774 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1575043694:522845..523057 | TCONS_00053858-exon-scaffold_234-1575043694:522845..523057 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1575043694:522313..522507 | TCONS_00053858-exon-scaffold_234-1575043694:522313..522507 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1575043694:519486..521420 | TCONS_00053858-exon-scaffold_234-1575043694:519486..521420 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1510915933:525195..525349 | TCONS_00053858-exon-scaffold_234-1510915933:525195..525349 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1510915933:523443..523774 | TCONS_00053858-exon-scaffold_234-1510915933:523443..523774 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1510915933:522845..523057 | TCONS_00053858-exon-scaffold_234-1510915933:522845..523057 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1510915933:522313..522507 | TCONS_00053858-exon-scaffold_234-1510915933:522313..522507 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1510915933:519486..521420 | TCONS_00053858-exon-scaffold_234-1510915933:519486..521420 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1491911889:525195..525349 | TCONS_00053858-exon-scaffold_234-1491911889:525195..525349 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1491911889:523443..523774 | TCONS_00053858-exon-scaffold_234-1491911889:523443..523774 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1491911889:522845..523057 | TCONS_00053858-exon-scaffold_234-1491911889:522845..523057 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1491911889:522313..522507 | TCONS_00053858-exon-scaffold_234-1491911889:522313..522507 | Clytia hemisphaerica | exon |
TCONS_00053858-exon-scaffold_234-1491911889:519486..521420 | TCONS_00053858-exon-scaffold_234-1491911889:519486..521420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_234 | supercontig | scaffold_234:519486..525349 - |
Blast
BLAST of TCONS_00053858 vs. Swiss-Prot (Human)
Match: RBM42 (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.028e-37 Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 640 VVRVAGSSVWEDDSLLDWDPNDFRIFVGDLGNEVSDDHLLRAFSKYPSLNXXXXXXXXXXXXXXGYGFVSFKDPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAXXXXXXXXXLGLR 1005
+R A S WED SLL+WD +DFRIF GDLGNEV+DD L RAFS++PS K++V+RDKR+ KTKGYGFVSFKDP DY++AMREMNGKYVG+RPIKLRKS WKDRN+ +KK+KEKKKLGLR
Sbjct: 359 CIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
The following BLAST results are available for this feature:
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