TCONS_00053856 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053856
Unique Name	TCONS_00053856
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1073

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_234:505038..515051-
coding sequence from alignment at scaffold_234:505038..515051-

transcript sequence

>TCONS_00053856 ID=TCONS_00053856|Name=TCONS_00053856|organism=Clytia hemisphaerica|type=transcript|length=1073bp
TTTGTCACGTGGAAGCAGTAACGTGGATAAGATTCGACTCTCAAAACAAA
TGCCATTGTTCAGTGGTTACCATGACACCTTTTATTTGGGTACTGATGGC
TACCTTTCATTGGATAATCTAAATAATTCACGATTCAGTTGGATAATCAA
ACCTCAAAACATGGTGTACAATAAAATCTACTTTGCGAATGTCAACTTCA
ATACTGGGCAAGATGGAAGagGAAACATTTCTTACCTTGAGATCACTGAC
ACATCCTCTAAAGTGATACAACTTGCCAATTCACAAATGAAGTTTTTCCT
TGGAAGGGATTTCAATACCAATCATGTTTTTATGGTGGATTATAACAACA
TGCTTGAAGATGGTTCCAACTCCAAACCGAAATCGTTTCAAGTAGCACTG
GTCAGTAACGGGATGGAGACTTATATCATCATACAATATCATACATACCT
TGGTTATGGAACAAAGAATGCGTATGAAAGCAAGAACTGTAGCTGGGACT
TGAACAGACTAGATGTATTCTTTTCATCTAGTACTGGAAATCAGAACAGA
GTGCTATCAAATACAGGTCGATCTGGACAGTATATTTTCAAAGTGTACGA
TATAATTTGTATGCACAAAGCCTTTATACCGTACGGTTCATCTAACGGAG
ACACAATATTGAGCAAGTTCGACGATGCAGAACGTCATATTGAATTGAAA
AAGACAATGCCTTTGTTTACAAAGCTCAGCAGATTTCTTTACCTGTCACC
AAACGGCCGATTATCGCTACTACGGGCTTCTCAATACGAAATAGAGCTCA
TGACCAAAGACTCTGTCGCTTTCTCTACATTATACAGTGACTTCGAATCA
GATTCGATCGGGAAAATTTATTATCGAGAAACATTCGATCAACCCGATCT
TGACTTGATTAATAAAGCATTGAATCAGACTGGTTTTCGAATGAATCATG
CTTTTGTAGTGACTTTCATTAACGTTCGAGATGCAGTTGATGATATCTTC
AGCCGTGGTTATAAAAACAGTTTTCAAATGATATTGGCTAGTGATGGGGA
AACTGCGTTTGGGATTTCAATAT

Run BLAST on NCBI

protein sequence of TCONS_00053856-protein

>TCONS_00053856-protein ID=TCONS_00053856-protein|Name=TCONS_00053856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
LSRGSSNVDKIRLSKQMPLFSGYHDTFYLGTDGYLSLDNLNNSRFSWIIK
PQNMVYNKIYFANVNFNTGQDGRGNISYLEITDTSSKVIQLANSQMKFFL
GRDFNTNHVFMVDYNNMLEDGSNSKPKSFQVALVSNGMETYIIIQYHTYL
GYGTKNAYESKNCSWDLNRLDVFFSSSTGNQNRVLSNTGRSGQYIFKVYD
IICMHKAFIPYGSSNGDTILSKFDDAERHIELKKTMPLFTKLSRFLYLSP
NGRLSLLRASQYEIELMTKDSVAFSTLYSDFESDSIGKIYYRETFDQPDL
DLINKALNQTGFRMNHAFVVTFINVRDAVDDIFSRGYKNSFQMILASDGE
TAFGISI

Run BLAST on NCBI

transcript from alignment at scaffold_234:505038..515051-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053856 ID=TCONS_00053856|Name=TCONS_00053856|organism=Clytia hemisphaerica|type=transcript|length=10014bp|location=Sequence derived from alignment at scaffold_234:505038..515051- (Clytia hemisphaerica)
TTTGTCACGTGGAAGCAGTAACGTGGATAAGATTCGACTCTCAAAACAAA
TGCCATTGTTCAGTGGTTACCATGACACCTTTTATGTGAGTATATTTCTT
GTGGAGTATGGAATCTTTAACGAACTTCCTAGGTCAATTTATGATATACT
GTACACCATCGCAATGTCTTCTGGCATTACATCACGAACCCAATAGCTGA
TTGGCTGTAAGTGACGTAAAATCAGATGTCACTTTCAACCAATCAGCTTG
TTGGGTCCGTGGAAGACATTGCAACGGTGCATGTCATAAATTGACCAATA
ATACTGGCAGAAAAGAAAATCTTTCAACAATTTGAAATAGACGATATCGG
CTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGCGCAAAAAAA
TTCACGGACGATATTGACTTTCCGCGCAATGCATCATTGGTAATCATTCG
GGGAGAATTCGGAAAGCCGATATCGTCTATTACAATGGGTTGTTTCGATT
TTTAAACAATCAAGGGAAAAATTTTTCTTTATATTTTAAAGTGAGGGTGG
ACGAAAGAAAATCAGTCTTTTACGCCTGGAAATTTTAAAATAATTTTTTA
CCAAATGGAAAAATAAAAAAACCTGCGTTTGACCCCAAGGAAATATCTTC
TTCACATTATCCACTGGAAATGTTCTTCCACCCCCTGTAGATGTTAAATA
GAATGGCCCTAATTGTAAAATAATTTGAATTATATTTCATTAATATTATT
TTCTAGTATAATGTAGAGGCCATATTCAAATAATACTCGAATTCTATAAA
CTCGAACTTAGTCCCTCAGTTCACTTTTTATGATACTGACAGCGCACAAG
ATTGCGTATCACGTCCATCAGTATAATTAAAAATGGAGCAAGTGGTTCTG
GGTAGGAGACTGCCATTTTTAACGCCCTTTTTTGTATTCGCTTTTTTGAA
ACCTAAAGAGAGGTCCTTGTTATTATTTGTCCTTTTCTTCTGTTAGTTCT
CGTCTCCATGCTCTGAATTTTCTATTATAGTAAGCAAGAACTTTTAAGAG
GGGACAAGAGGGGCGCAAAATTTGTGTAGGAGAGTAGATTTTGAAGACAC
ATTAATTACCTTTTTATATTATGAATAAATAATTACTGTTTCATAAAAGT
CTGCTCTCCTATACAAAATTTGCGCCCCTCGTGTCTACGCTAGTGAAGAT
ATGACGGATGTCTTTCTTCAACTCTAGTTGGGTACTGATGGCTACCTTTC
ATTGGATAATCTAAATAATTCACGATTCAGTTGGATAATCAAACCTCAAA
ACATGGTGTACAATAAAATCTACTTTGCGAATGTCAACTTCAATACTGGG
CAAGATGGAAGAGGTATACCTTATCGGGGAAAAGTGACGAAATTTCGGCC
AAGTGACGAAGATTTTTCCCCGACGAAAATTTTCCCCGGCCTTAATACGT
TTACCAAAACCAGCAAGTGACGAATATTTTTCCCCGACGAAAATTTTCCC
CGACGAAGTTTTCCCCGATAAGGTACCGTTGTTTCTAATCCCCTGCCTTT
CTTTGATAGTTCCTACCTGTAAGATCTAGTTATCGGTAAGAGCCTGCTTC
TGCCTTGCCTCCTCTCGATGTGAGCGACGGCACAAGATCGATAGAAAAGT
TTGCAGTTTCAAATCTTTGCTTGAAAAAGATAGAACAAGTCATTGCATTG
ACGTCAAAAGAAGGCATCGCATTGACTTTAGAAAGTCGATTTTCTGCCGA
CTTTCGTCAAAAATGAGGGAAGGCAAGGCAGAAGGTGAACCGTTTAAACT
AGTGCTAATTATTTCTATGCCTTTCAAGCCCTTGTCTGTATGTCTATCGT
TCGCACGGGGAACGCCCATTTTCTCGAGATTCGTAAGGGGTTAGTTATTT
AAAAAGGGAAAAGAAAACCTCTATCAAAGTCCTCTTCAAAAACTTCAGGT
AGTATAAGGGTAGGAATCTTTTAGTTGACGATGAAAAATTGTTCAAGTTA
AGAAGAGTACCGACTGTAGACGTTCTAATCTACACAATAGGCAGCAATGG
GCTTTTAGGCCTTTTTTTAAAAGGTCAGCCTTACGCTTAAAACAAGGAAT
TCATGGCGTAGTCTAAAACCACATTCGGACGTTTCGGTTTTGTATCGTTC
CGATACGAAACGGTTCCGAAACACCGTGTGAACGTCAAAATTCGAAACGT
CAAAAATGAAGACGTTACAAAACAAAACAGATCGAAACGCTTTCGATCCA
CTATTTTCATCGGAACTGTACTGCTCCACTTGGTTACTCCAAGATGTTCC
GAAATCAATATGCACACTCAATCCGTAACAGACACCATGTAGGAGTATTA
CCAAACTGTAACGTCTGAACATTGTTTTAGACGTTTGCTTACCTTTCATC
ATTTTCCCAACAGGAAACATTTCTTACCTTGAGATCACTGACACATCCTC
TAAAGTGATACAACTTGCCAATTCACAAATGAAGTTTTTCCTTGGAAGGG
ATTTCAATACCAATCATGTTTTTATGGTGGATTATAACAACATGCTTGAA
GATGGTTCCAACTCCAAACCGGTAAGACTATGATATTTGTTATGTGAAAA
TGAAATCTGTAAGTATGTCTTTGACCGCAGTCGGAGGCGACCCCAAGGGC
CCCTCTTTCGATAGCTAATCTGTTTTATCTAGCTATATTAAATATATTAA
AGGAACCTTCTGCGGGGGTTTAGGTGTCTGATTCAAAAATTAGTTCATCT
TACCAGGAATTCTTCTAAGCACTTTGAGCTTGGGTCGTTTTTGTAAACTT
ATATTGAATTTCTAATATGCCTGAAAGGGAACTTGCTCAGAAAAACTGTA
AAGCAAAGCAAAGCTGGGAGTCTTGAGTCCCCAAAAACTCTTGAATATGT
AGATAATAATTACAGTTACTGTTGCTCATAAAACCATAAACTACAAAAAA
GGTTATTCAATAGAAAAAATTTAATTTATTTTGGATTGAGTTTCAAAAAC
TCAATCTTAGATTGAGTATTTCGGCCGGTATACGGACATAAAAAAGTGCT
TAGAAAAATTTCTGCTTACTGAAAATTCGTTACCGTGAAAAGCACAGGTC
GAAATCATATATCGATGCTGTGCCGACGAATCGAGATTCTATTCATCGCG
CAATCAACGAAGACAAAACGCCGTGTCAATAGCACACCGCTATGCAAACG
TCATAATTATTACTTTAACCATTTGACCGAAATTCAATCCCACAATCCTT
TTCATCTTGATTCGTAATGCATGCAAGTTATTACTTTTGTATTGTCAAAG
AGTGTAATTGACTTGCAAAAGCAATTAATGCAAAGGATGATGGGATTAAA
ACTCGGACAAACAGTAATTTTGATGTCTATTTTTAGAATCACTGCGGTAT
GCTATTCAAGACAGCCTTAAGTCAATTTTTTCCAATTTGAGATAATTGAC
TTTAAAGGTTGAGATGTGTTGGACTTAAGGCTACACATTTCATGTCAATG
CTTCATAGAAAATAAAATTTGCACTAAAATTTAGGACTGTTAGGCTGTTT
ATGGTTGATATATTATGGAACATTCTAAATTCTTATTTTTTTTGAATTGC
AAAATACACCTCTTTCCAATTAGAGTTCTGTGGACTTAAGGCCGTTTTTG
GAAAGCGTGCATGCTGAAATAGGGGGTTATGGTCTTAAGTCAATTTTCGA
AAAAATGGACTTAAGTCTATCTTGAATTGACACGGCGAAAAGTAACCATG
ACGACCATCCAAGATCTTGGATGAAGTTCAAAGTTGATATTTTTATTCCC
GTCGTTGAAAAGACAACTAAACAATGTCATCAATGCTCTTTAAAAAGAGT
CAGTAATAGAGAATCATAACATTCGATTCAATTAAAGTGACATTTCCATA
ATTAATAGTTAAGTAATTTCTGTTATACATTTGGGGATCATGTAAAGAAT
TTCTTTCGAAAGAAACTCACTTCGGCTGCGTTTAGACCAGCCTGGCATTT
GTAATTGCTTGCAGTATTCTTTTGAATTCTATTGTTCCGCGCAATTGTTC
GGTTTGTCAAATGCCTAATAATGACAGCGTGTTGGCATTTGAAATGCCGT
TTTGAGCAAAGGAATCCCTTTTTCTGGCATTTCAAATCAAACAAAGGAAC
CAAAACAAAGAGAAAATATTACATTTTTGATTTTTTAAAGTATTTGCACG
TTTTTTATTCAGTTCTTTCTACAGTATGTGGCCCCCAAAACGGCGATCAA
ATTTGAAATTTCTCTCAAATCTAGAGGAAAAGAGATTTTACAAAGATTTT
TGCTGCATGAAAACCNTCAGCCAAATACAATCACTTTTGAAATCATTTGA
CTGAACCAAAGTTGTACAGTATGTGGCCCCCAAAACGTGGATCAAATTTA
AAATTTCTCTCAAATCTAGAGGAAAAGAGGTTTTACAAAAATTTTTGCTG
CATGAAAAACTTTATATATCTCTACTTTATTTCCCGGAAGTTCTTTTTCA
AAATTTTCAATTTCAACAATACTTTTCAATCGCTTAAAGGTAGGTAGCTT
TTTTTAAATGGCCCCAAAAACGGAGGTTTGAAATTTTAGCGATTTCTCGA
GATATCTTTAAGATATGAATACGAAATTTTGACCATAGTTTTGAAATATG
ATTTAGAGGGTTTTGGGCATAAATTTATTTGATAAAATTTTTACAGTATA
CCCCTGATTGTCAAAATGCAGGTTTGGGGCCCCCAAAACGGAGGTGTAGC
TAAAATCAAATCCATCATTCTTTCAAAATAAACAAAAATCGTTTAATTCT
GATAAATCTACAAGTCAGAATCTTCATTTTAATGAAAACCTCCGTTTTGG
GGGCCGTCTCCGTTTTGGGGGCCATATACTGTATAGATTGTAAAATTAGC
AAGATTTGCCATAGCCTAACCCTACGGCAAAAAGTTTCAGTCTTAATGAC
TGCAGTTTTTGAGAAATTCCATGTTTGATCTGTCAAAGTTGAACTTGAGG
GAATCACCTTTTCAGTAATGACTCTAAAAAGACGATTCCTTAAATGCCAT
GACAGAAAATACCATGGAAAAGCTATTAAAATCGAATCCCTCATGAGCAA
ATGCCAAATTACAAATGCCAGTTAGTAAGTAAGTAGTAAGTAAGTAAATG
ATTTATTTGTCCTAATAAGCGAGACGAGCGACCACACTCATAGACAAAAA
AGCTAAACTAAGGAGGTGGCCGCACGATCGCGCACGATATAGTTACAAGA
TTGAATAAATTTAAGCTCTTATTTTAAGTAGAAATTGACAAGAAATTTTT
CGTAAAAATGCTTTAAAAAATAAAGTTTAAAAACAAAATAAACCAACTCA
AATAACCAAATAACTAAGAAGACAAACTGTAACGAGAGCTAAGTATACGA
AGACAAAAAGTATAACTTAAGAAANTAAAATAACCAACTCAAATAACCAA
ATAACTAAGAAGACAAACTGTAACGAGGGCTAAGTATACAAAGACAAAAA
GTATAACTTAAGAAAGTCCTTAAGACGATCCAATGCAAATGTGGAGTTGT
CATCAAATGTCAAGAAATCTTGAATTTCATTCCAAGCAAGAATTGATTGG
TATAAAACTGAGTAATTGCCATAAGTCACTGTTTTTACTTCGGGTATTTT
TAAAAGTCCGGACTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTGCGTAAGAAAGATGACATTGAAAAATAGAATAATATAATGATGT
TAATGTTTTCTTGTCGACATAATGCCTAAGTTTACTGAGAGCTCCATTAG
CTCTCTTCAATTTATTACAAACAAAGTTTATATGGTGTTTCCAGTTCAAA
TGTTCATCCAGATATACAACCAAATACTTGACAACTTTGCTTGGTATGAG
TTTGCGTCCATTGACTTTGATTTTTAAGTCATAGTTGATCTTCTTTCGAA
TCGGACGAAAGATCATAAGTTCAGTCTTACCAACGTTTAACGAGATCTTG
TTCGCCTTCAGCCAGTTCATGAGAAGCTTAAGGTCGGTATTAGCTCGTTT
AGCTATAGGTTTTAAAGATTCATCTCTCAGAAAGAGCATAGTATCATCAG
CAAACAGATTGACAAGAGAATATCGAAGAGCAGTATGAAGATCGTTCACA
TAAAGAAGGAAAAGAAGGGGGCCAAGAACGGAACCCTGGGGGACACCATG
TTGCATGCGTCTAGATGTAGAATTTTTACTTGAAACTGAAACAAACTGTG
ATCTATCAGTTAGAAAAGAACGAAACCAGTCAAGAGATTTTCCCCGAATG
CCATAGAAATCTAGTTTAGCGAGTAAGATGGAATGGTCGACAGTGTCAAA
AGCTTTTTGCAGATCTATAAAGATGGAACAACCGAAATCACCTTCATCCA
AGACACTTGAGATTTGGTTAACACAGTAAAGAAGGGCTGTCTCAGTAGAA
TGTCCAGAGCGAAAACCGAATTGTAAAGAATATATGGAATTTGTCTGATC
AAGAAAATTTATCAGTCGTTTGTGCATAAGTTTTTGAAAAATTTTGTCGA
TGTTTGAAAGAAGTGAAATGGGTCTGTAATTTTCAGCATCAAAAGGAGAT
CCTTTGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
ATGATGTCAGTGAAGATCGAAGACAGACTATTTAGGTTAGAAGAAATAAT
ACGATAAGGGATGCTATTGGGACCAGAAGCTTTGTTCTCACTCAAGGACA
TTAAAACTTTAGAGAGTTCGAGTATGGAGACTGGCGAGATGAGAAAGTTA
TTAGGATTTCGACCTTCATTTGATAGCCATTCAGAAAAGTGATGACGTAT
GAAAGCAATCGTTGAGAAGAAATCATTGAAGCCTTCTGAGACTTCTTGAG
GGCATGAAGAAAGAGAGTCATTGATGTTGAGAGAAATACTAGACCTAGAA
TTCGAAGAAGATATGACTTCCCGGACACCTTGCCAAAGTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATGAGTGAAACTATTC
GATTACGATAAAATTTATACCTACCTCGAAGGAAAGATTTGAGATCCTTT
GCAGAATCAGGAACGCTCAGATAGTCATTTTTGAGATGATCCCTGATTGT
CATTGAGGTTGTCTAAACGCAGCCTTCAATTACACTTGGAGGTTCTGGGG
AATTCGTAAATAGTAAACTGCATACTGATACAGTCTGCTAGACATTTATA
TGGTAATATTTGCTCTTCATCTTTGATTTTTTCTACAGTGATTTGATTGA
CACATGCGCGATAAAATTTCTATTATTGGTCTTTAGAGGTTAATAGATTA
ACAATTCGTATTTTCAAAGAAACAATCTCAATAAATAAAGGCGGCGCAAA
ACATGAATTTTAATAAGTCAAAAAAACACGTCCCTATGAATTAAAACCTG
TGTCTTGAGCTTGACTTTCTACTTTAAAGACTGCTATATAGTATTAACTC
CGGACTGAATTAATTGAAGCAAATAACCGTTTCGAAGTCAATACACTCGT
TGATGTTTTGTCAATTCATGCATATCAGAAGCCGAATGAAATCTCTCGAA
GTCAAACCCCGGGGGGGGGGCACTCATATGGTCCGACGCACGGCATGTGT
CGTCCTTAAGGGTTTTCGAGACCCTTGAAATGCACTGTAAGGGTGTACTT
TTGATGGAGTGCACTACAAGGGTCTTCTTTTAAAGGGTGTGTTTGGGGAC
TGCTGAATTGGAAGTCTGACAATAAAAATCTCATATTTATTTATAGTTTT
AACTTGCACCCATTTTGATTTGTTTTGTACATTGTGTCGACATATCAGGC
TCATTTTCAGGTGGCTTCAGTAAAACAAGACATAAAATAAACTACAACAT
TGTAAGGGTCAGAATCTTTTAGTAAAATGCATTGTAAGGGTACCTTTTCA
CTACTCAAGAGTTGCACTGTAAGAATCCGATTTTGAAAGTCAAATTTTTG
GCGACACACGTCGTCGTTTAGAAATCGAGATTTAAAGCTATCTAAACTAA
ACTAAACTAAAACTAACTAAACTATCTAAAGATTTAGAACGCCATGCTGT
GTACACAACTATAATTGAATCTTTAGAAATCGTTTCAAGTAGCACTGGTC
AGTAACGGGATGGAGACTTATATCATCATACAATATCATACATACCTTGG
TTATGGAACAAAGAATGCGTATGAAAGCAAGAACTGTAGCTGGGACTTGA
ACAGACTAGATGTATTCTTTTCATCTAGTACTGGAAATCAGAACAGAGTG
CTATCAAATACAGGTCGATCTGGACAGTATATTTTCAAAGTGTACGATAT
AATTTGTATGCACAAAGGTACTCTTGTTTCATTTCGAATAATATTTTTGA
TTCCTTAAATTTACCGCGACATCTTACCTACTCTACACCAAAGTGTATCT
CACATTTATCGCTTCGCAGTACACTCTGTGCGCGCTATCTGTTTGATAAA
AATTTCCCGTACGGAGACCTCTGCGATGAAGTATGATTTATAAATAGCAA
CACTTCTCTAATCGTCTCCCCTCTTTCACCAGCACTCCATCGCAGCTGTT
AATTTGAAAAATCTCAAATGAGAAAAGACAACGAAAATAGATCCTCTACG
GCAATTAACTTTGAAATTAGCCGTAGATACTGGGTCTGTGTACAGACAAG
ATCTTGGCATATGCATGCTAATTTCTTTCGGTGATGAATTTACACCCATG
GTAGAAACTCGATTTACTGAGGTTAATACGAAAGAATGAATAATTATTCT
GACCTAAGAGTCTATATCAAGAAAAAGAATTTATTGCACGTGTGAATCTT
TAAATTCTATTTAAGAGACTCCAGATATGTTTATAGAAATTTTTTATATA
CTATTTAGAAACGTGAGTCCCTTACAATTATTCCTGCAAGAGTAATTTCA
GTAGTTTCTTTTTTCAGCCTTTATACCGTACGGTTCATCTAACGGAGACA
CAATATTGAGCAAGTTCGACGATGCAGAACGTCATATTGAATTGAAAAAG
ACAATGCCTTTGTTTACAAAGCTCAGCAGATTTCTTTACGTGAGCAAGTT
ATCAATACATTAATTAATGTTAGGATTGAAAAATTTGACCTAACTTAACT
TTAACCAAATTTCGCCGTTATGAAAGAAAACACTTTTCTTCCAAATCTTA
AAATGAGCATAGCATAACGTTTGAAAATACGTGTTGTCCCTGTTTCCCAG
CAGGCACCTATAGCAAACTCGAGCCTAACTTGAGAACTTTGCTTTAGGTT
ATGCCTGTAGGCATCTCAAATATTTTTATGTAAAGTACCAGTCGAAAAGG
GAATCAATTTTTCGTCTTCGTTTTACTTTCTAGCTGTCACCAAACGGCCG
ATTATCGCTACTACGGGCTTCTCAATACGAAATAGAGCTCATGACCAAAG
ACTCTGTCGCTTTCTCTACATTATACAGTGACTTCGAATCAGATTCGATC
GGGAAAATTTATTATCGAGAAACATTCGATCAACCCGATCTTGACTTGAT
TAATAAAGCATTGAATCAGACTGGTTTTCGAATGAATCATGCTTTTGTAG
TGACTTTCATTAACGTTCGAGATGCAGTTGATGATATCTTCAGCCGTGGT
TATAAAAACAGTTTTCAAATGATATTGGCTAGTGATGGGGAAACTGCGTT
TGGGATTTCAATAT

Coding sequence (CDS) from alignment at scaffold_234:505038..515051-

>TCONS_00053856 ID=TCONS_00053856|Name=TCONS_00053856|organism=Clytia hemisphaerica|type=CDS|length=6426bp|location=Sequence derived from alignment at scaffold_234:505038..515051- (Clytia hemisphaerica)
CTGTCACCAAACGGCCGATTATCGCTACTACGGGCTTCTCAATACGAAAT
AGAGCTCATGACCAAAGACTCTGTCGCTTTCTCTACATTATACAGTGACT
TCGAATCAGATTCGATCGGGAAAATTTATTATCGAGAAACATTCGATCAA
CCCGATCTTGACTTGATTAATAAAGCATTGAATCAGACTGGTTTTCGAAT
GAATCATGCTTTTGTAGTGACTTTCATTAACGTTCGAGATGCAGTTGATG
ATATCTTCAGCCGTGGTTATAAAAACAGTTTTCAAATGATATTGGCTAGT
GATGGGGAAACTGCGTTTGGGATTTCAATACCTTTATACCGTACGGTTCA
TCTAACGGAGACACAATATTGAGCAAGTTCGACGATGCAGAACGTCATAT
TGAATTGAAAAAGACAATGCCTTTGTTTACAAAGCTCAGCAGATTTCTTT
ACAAATCGTTTCAAGTAGCACTGGTCAGTAACGGGATGGAGACTTATATC
ATCATACAATATCATACATACCTTGGTTATGGAACAAAGAATGCGTATGA
AAGCAAGAACTGTAGCTGGGACTTGAACAGACTAGATGTATTCTTTTCAT
CTAGTACTGGAAATCAGAACAGAGTGCTATCAAATACAGGTCGATCTGGA
CAGTATATTTTCAAAGTGTACGATATAATTTGTATGCACAAAGGAAACAT
TTCTTACCTTGAGATCACTGACACATCCTCTAAAGTGATACAACTTGCCA
ATTCACAAATGAAGTTTTTCCTTGGAAGGGATTTCAATACCAATCATGTT
TTTATGGTGGATTATAACAACATGCTTGAAGATGGTTCCAACTCCAAACC
GTTGGGTACTGATGGCTACCTTTCATTGGATAATCTAAATAATTCACGAT
TCAGTTGGATAATCAAACCTCAAAACATGGTGTACAATAAAATCTACTTT
GCGAATGTCAACTTCAATACTGGGCAAGATGGAAGAGTTGTCACGTGGAA
GCAGTAACGTGGATAAGATTCGACTCTCAAAACAAATGCCATTGTTCAGT
GGTTACCATGACACCTTTTATCTGTCACCAAACGGCCGATTATCGCTACT
ACGGGCTTCTCAATACGAAATAGAGCTCATGACCAAAGACTCTGTCGCTT
TCTCTACATTATACAGTGACTTCGAATCAGATTCGATCGGGAAAATTTAT
TATCGAGAAACATTCGATCAACCCGATCTTGACTTGATTAATAAAGCATT
GAATCAGACTGGTTTTCGAATGAATCATGCTTTTGTAGTGACTTTCATTA
ACGTTCGAGATGCAGTTGATGATATCTTCAGCCGTGGTTATAAAAACAGT
TTTCAAATGATATTGGCTAGTGATGGGGAAACTGCGTTTGGGATTTCAAT
ACCTTTATACCGTACGGTTCATCTAACGGAGACACAATATTGAGCAAGTT
CGACGATGCAGAACGTCATATTGAATTGAAAAAGACAATGCCTTTGTTTA
CAAAGCTCAGCAGATTTCTTTACAAATCGTTTCAAGTAGCACTGGTCAGT
AACGGGATGGAGACTTATATCATCATACAATATCATACATACCTTGGTTA
TGGAACAAAGAATGCGTATGAAAGCAAGAACTGTAGCTGGGACTTGAACA
GACTAGATGTATTCTTTTCATCTAGTACTGGAAATCAGAACAGAGTGCTA
TCAAATACAGGTCGATCTGGACAGTATATTTTCAAAGTGTACGATATAAT
TTGTATGCACAAAGGAAACATTTCTTACCTTGAGATCACTGACACATCCT
CTAAAGTGATACAACTTGCCAATTCACAAATGAAGTTTTTCCTTGGAAGG
GATTTCAATACCAATCATGTTTTTATGGTGGATTATAACAACATGCTTGA
AGATGGTTCCAACTCCAAACCGTTGGGTACTGATGGCTACCTTTCATTGG
ATAATCTAAATAATTCACGATTCAGTTGGATAATCAAACCTCAAAACATG
GTGTACAATAAAATCTACTTTGCGAATGTCAACTTCAATACTGGGCAAGA
TGGAAGAGTTGTCACGTGGAAGCAGTAACGTGGATAAGATTCGACTCTCA
AAACAAATGCCATTGTTCAGTGGTTACCATGACACCTTTTATCTGTCACC
AAACGGCCGATTATCGCTACTACGGGCTTCTCAATACGAAATAGAGCTCA
TGACCAAAGACTCTGTCGCTTTCTCTACATTATACAGTGACTTCGAATCA
GATTCGATCGGGAAAATTTATTATCGAGAAACATTCGATCAACCCGATCT
TGACTTGATTAATAAAGCATTGAATCAGACTGGTTTTCGAATGAATCATG
CTTTTGTAGTGACTTTCATTAACGTTCGAGATGCAGTTGATGATATCTTC
AGCCGTGGTTATAAAAACAGTTTTCAAATGATATTGGCTAGTGATGGGGA
AACTGCGTTTGGGATTTCAATACCTTTATACCGTACGGTTCATCTAACGG
AGACACAATATTGAGCAAGTTCGACGATGCAGAACGTCATATTGAATTGA
AAAAGACAATGCCTTTGTTTACAAAGCTCAGCAGATTTCTTTACAAATCG
TTTCAAGTAGCACTGGTCAGTAACGGGATGGAGACTTATATCATCATACA
ATATCATACATACCTTGGTTATGGAACAAAGAATGCGTATGAAAGCAAGA
ACTGTAGCTGGGACTTGAACAGACTAGATGTATTCTTTTCATCTAGTACT
GGAAATCAGAACAGAGTGCTATCAAATACAGGTCGATCTGGACAGTATAT
TTTCAAAGTGTACGATATAATTTGTATGCACAAAGGAAACATTTCTTACC
TTGAGATCACTGACACATCCTCTAAAGTGATACAACTTGCCAATTCACAA
ATGAAGTTTTTCCTTGGAAGGGATTTCAATACCAATCATGTTTTTATGGT
GGATTATAACAACATGCTTGAAGATGGTTCCAACTCCAAACCGTTGGGTA
CTGATGGCTACCTTTCATTGGATAATCTAAATAATTCACGATTCAGTTGG
ATAATCAAACCTCAAAACATGGTGTACAATAAAATCTACTTTGCGAATGT
CAACTTCAATACTGGGCAAGATGGAAGAGTTGTCACGTGGAAGCAGTAAC
GTGGATAAGATTCGACTCTCAAAACAAATGCCATTGTTCAGTGGTTACCA
TGACACCTTTTATCTGTCACCAAACGGCCGATTATCGCTACTACGGGCTT
CTCAATACGAAATAGAGCTCATGACCAAAGACTCTGTCGCTTTCTCTACA
TTATACAGTGACTTCGAATCAGATTCGATCGGGAAAATTTATTATCGAGA
AACATTCGATCAACCCGATCTTGACTTGATTAATAAAGCATTGAATCAGA
CTGGTTTTCGAATGAATCATGCTTTTGTAGTGACTTTCATTAACGTTCGA
GATGCAGTTGATGATATCTTCAGCCGTGGTTATAAAAACAGTTTTCAAAT
GATATTGGCTAGTGATGGGGAAACTGCGTTTGGGATTTCAATACCTTTAT
ACCGTACGGTTCATCTAACGGAGACACAATATTGAGCAAGTTCGACGATG
CAGAACGTCATATTGAATTGAAAAAGACAATGCCTTTGTTTACAAAGCTC
AGCAGATTTCTTTACAAATCGTTTCAAGTAGCACTGGTCAGTAACGGGAT
GGAGACTTATATCATCATACAATATCATACATACCTTGGTTATGGAACAA
AGAATGCGTATGAAAGCAAGAACTGTAGCTGGGACTTGAACAGACTAGAT
GTATTCTTTTCATCTAGTACTGGAAATCAGAACAGAGTGCTATCAAATAC
AGGTCGATCTGGACAGTATATTTTCAAAGTGTACGATATAATTTGTATGC
ACAAAGGAAACATTTCTTACCTTGAGATCACTGACACATCCTCTAAAGTG
ATACAACTTGCCAATTCACAAATGAAGTTTTTCCTTGGAAGGGATTTCAA
TACCAATCATGTTTTTATGGTGGATTATAACAACATGCTTGAAGATGGTT
CCAACTCCAAACCGTTGGGTACTGATGGCTACCTTTCATTGGATAATCTA
AATAATTCACGATTCAGTTGGATAATCAAACCTCAAAACATGGTGTACAA
TAAAATCTACTTTGCGAATGTCAACTTCAATACTGGGCAAGATGGAAGAG
TTGTCACGTGGAAGCAGTAACGTGGATAAGATTCGACTCTCAAAACAAAT
GCCATTGTTCAGTGGTTACCATGACACCTTTTATCTGTCACCAAACGGCC
GATTATCGCTACTACGGGCTTCTCAATACGAAATAGAGCTCATGACCAAA
GACTCTGTCGCTTTCTCTACATTATACAGTGACTTCGAATCAGATTCGAT
CGGGAAAATTTATTATCGAGAAACATTCGATCAACCCGATCTTGACTTGA
TTAATAAAGCATTGAATCAGACTGGTTTTCGAATGAATCATGCTTTTGTA
GTGACTTTCATTAACGTTCGAGATGCAGTTGATGATATCTTCAGCCGTGG
TTATAAAAACAGTTTTCAAATGATATTGGCTAGTGATGGGGAAACTGCGT
TTGGGATTTCAATACCTTTATACCGTACGGTTCATCTAACGGAGACACAA
TATTGAGCAAGTTCGACGATGCAGAACGTCATATTGAATTGAAAAAGACA
ATGCCTTTGTTTACAAAGCTCAGCAGATTTCTTTACAAATCGTTTCAAGT
AGCACTGGTCAGTAACGGGATGGAGACTTATATCATCATACAATATCATA
CATACCTTGGTTATGGAACAAAGAATGCGTATGAAAGCAAGAACTGTAGC
TGGGACTTGAACAGACTAGATGTATTCTTTTCATCTAGTACTGGAAATCA
GAACAGAGTGCTATCAAATACAGGTCGATCTGGACAGTATATTTTCAAAG
TGTACGATATAATTTGTATGCACAAAGGAAACATTTCTTACCTTGAGATC
ACTGACACATCCTCTAAAGTGATACAACTTGCCAATTCACAAATGAAGTT
TTTCCTTGGAAGGGATTTCAATACCAATCATGTTTTTATGGTGGATTATA
ACAACATGCTTGAAGATGGTTCCAACTCCAAACCGTTGGGTACTGATGGC
TACCTTTCATTGGATAATCTAAATAATTCACGATTCAGTTGGATAATCAA
ACCTCAAAACATGGTGTACAATAAAATCTACTTTGCGAATGTCAACTTCA
ATACTGGGCAAGATGGAAGAGTTGTCACGTGGAAGCAGTAACGTGGATAA
GATTCGACTCTCAAAACAAATGCCATTGTTCAGTGGTTACCATGACACCT
TTTATCTGTCACCAAACGGCCGATTATCGCTACTACGGGCTTCTCAATAC
GAAATAGAGCTCATGACCAAAGACTCTGTCGCTTTCTCTACATTATACAG
TGACTTCGAATCAGATTCGATCGGGAAAATTTATTATCGAGAAACATTCG
ATCAACCCGATCTTGACTTGATTAATAAAGCATTGAATCAGACTGGTTTT
CGAATGAATCATGCTTTTGTAGTGACTTTCATTAACGTTCGAGATGCAGT
TGATGATATCTTCAGCCGTGGTTATAAAAACAGTTTTCAAATGATATTGG
CTAGTGATGGGGAAACTGCGTTTGGGATTTCAATACCTTTATACCGTACG
GTTCATCTAACGGAGACACAATATTGAGCAAGTTCGACGATGCAGAACGT
CATATTGAATTGAAAAAGACAATGCCTTTGTTTACAAAGCTCAGCAGATT
TCTTTACAAATCGTTTCAAGTAGCACTGGTCAGTAACGGGATGGAGACTT
ATATCATCATACAATATCATACATACCTTGGTTATGGAACAAAGAATGCG
TATGAAAGCAAGAACTGTAGCTGGGACTTGAACAGACTAGATGTATTCTT
TTCATCTAGTACTGGAAATCAGAACAGAGTGCTATCAAATACAGGTCGAT
CTGGACAGTATATTTTCAAAGTGTACGATATAATTTGTATGCACAAAGGA
AACATTTCTTACCTTGAGATCACTGACACATCCTCTAAAGTGATACAACT
TGCCAATTCACAAATGAAGTTTTTCCTTGGAAGGGATTTCAATACCAATC
ATGTTTTTATGGTGGATTATAACAACATGCTTGAAGATGGTTCCAACTCC
AAACCGTTGGGTACTGATGGCTACCTTTCATTGGATAATCTAAATAATTC
ACGATTCAGTTGGATAATCAAACCTCAAAACATGGTGTACAATAAAATCT
ACTTTGCGAATGTCAACTTCAATACTGGGCAAGATGGAAGAGTTGTCACG
TGGAAGCAGTAACGTGGATAAGATTCGACTCTCAAAACAAATGCCATTGT
TCAGTGGTTACCATGACACCTTTTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033986	XLOC_033986	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053856-protein	TCONS_00053856-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_234	supercontig	scaffold_234:505038..515051 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0821244	0.160168	0.0464927	0.136458	0.221499	0.350062	0.26396	0.197693	0.0346023	0.0428606	0	0.0273472	0.573493	0.68066	0.0466329	0.0250221	0.770631	0.442328	1.4841	3.06033	1.23074	0.813325	0.470811	0.727661	1.9839	1.96731	0.0563044	0.0600896	0.182303	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003886	NIDO_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007160	cell-matrix adhesion

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007160	cell-matrix adhesion

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053856 vs. Swiss-Prot (Human)

BLAST of TCONS_00053856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053856 (transcript) - C. hemisphaerica