TCONS_00053835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053835
Unique NameTCONS_00053835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053835 ID=TCONS_00053835|Name=TCONS_00053835|organism=Clytia hemisphaerica|type=transcript|length=948bp
atttactccattattttttagaataaaaaagaaaaaattctaaaagatgT
TTGCCTCACTGCGACTAGTAAATAACAAGTTACAGACAATTTGTCAATGT
CAAAAACTGCAGCAACGTACTATGTCTTATCTTAAAGctcATCGAAAAAG
ATTTTACAGGAACGTCAATTTAGAGAAGACAGACGAGGGATTCTTAGTAC
AACTCGATGGTAAAACAATAAAGACACCTTTACGTTTCAAATTATGTATA
CCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCACATGCAAAC
AAATGAAATCAATCCCTTCTCCATGCCTTTGACGTCCATTTGTAACACAA
CCATAGATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAATTA
TTACAATTTCTCCATTCGGATACCATATGCTCACTTGCAGAAATGCCAGA
ATCGCTCGTTGAACGCCAAGACAAAGAATGGAAACCTATTAGAGATTGGT
TctcaaaaacATTCGAAGTTGAAGTCAATGCATCGTCTAATCTGTTCAAT
CTTTGTCAATCGGATGAAACAGTCGAAAGACTCGAAGAATATCTTCTCAA
AATGAATTATTGGCAAATTAACGGGCTACAGAGTGGTATAGATGCAATCA
AGTCGTTTATCTTACCGTTAGCTGTATTCCATGGACACATATCTGTTGAA
CGAGCTGTTTATTTATCAAGGCTTGAGTCTGAATATCAGAGCGAGAAATG
GGGCAAGTTTGAAGGATCGCACGACATTGATCAATATACACAGCAAGCGA
TGCTGGCTGCTGGTACACTTGTTTGTAACTTGTGTCGATTTGATATTTAA
AGTTTTGTGGATGAAATATAGTCTTGTCATCTTTTTTTGTATATGcagtg
aaaatatatattttttattccagAAAAATAGAGATATTAAAATTACAA
Run BLAST on NCBI

protein sequence of TCONS_00053835-protein

>TCONS_00053835-protein ID=TCONS_00053835-protein|Name=TCONS_00053835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MFASLRLVNNKLQTICQCQKLQQRTMSYLKAHRKRFYRNVNLEKTDEGFL
VQLDGKTIKTPLRFKLCIPQYDLALAVSNEWHMQTNEINPFSMPLTSICN
TTIDNPTELPKEDLVKELLQFLHSDTICSLAEMPESLVERQDKEWKPIRD
WFSKTFEVEVNASSNLFNLCQSDETVERLEEYLLKMNYWQINGLQSGIDA
IKSFILPLAVFHGHISVERAVYLSRLESEYQSEKWGKFEGSHDIDQYTQQ
AMLAAGTLVCNLCRFDI
Run BLAST on NCBI

transcript from alignment at scaffold_234:269998..275330-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053835 ID=TCONS_00053835|Name=TCONS_00053835|organism=Clytia hemisphaerica|type=transcript|length=5333bp|location=Sequence derived from alignment at scaffold_234:269998..275330- (Clytia hemisphaerica)
ATTTACTCCATTATTTTTTAGAATAAAAAAGAAAAAATTCTAAAAGATGT
TTGCCTCACTGCGACTAGTAAATAACAAGTTACAGACAATTTGTCAATGT
CAAAAACTGCAGCAACGTACTATGTCTTATCTTAAAGGTATGACTCAAAT
GAATTATTACATTGAATTTTATTGGATCCTGTTTTAAGGGATCTGACCAT
AGTCAAAAAAATCGATTTTGGTGCTTGAGCATAAAAGTTATGTTTCAGGT
TCCTTTACACTTTTAACAAAGAATTGCCTCTACAAATTGCTTTTTGATCA
AATCCCATAAAAGTAATTAAGAATTTAATTGCAAAAATGACGTTATGAAC
TTTAAAAAGACGTCAATANATCCCATAAAAGTAATTAAGAATCTAATTAC
AAAAATGACTTTATGAACTTTAAAAAGACGTTAGTATATGTTGCATCACC
CTCTTTTATAAAAAGTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTT
CAAAATTTTTTCAAACTGTCTGCAAAGAATTGAACTGTTTTAAATTTTTC
GATAATTTTTTTCTAAATTGATGCATCAAAAGTAATAGCTTTTTTCTATG
AATAATTGGGATGAAAAATAGGTCAAAAAGCTTTTTTTTTCAAGATTTTG
AGACGAGTAAGCTTTTAGAAAAATTTTCCGAAAATTTATTTTTAGTTCGG
TAAAGGATACACAATCCTTCCCCAAAAATTTTTTCAAAATATTTCTTCTT
CGACCAAACTAAGCTCTTCAAAGTTGAAATACTGTTCGTTACAAAAGTCT
TCATTTTCTTCTTCATCAATTTTTTTCTTTGTGATTCATGAATTTCCAGA
CTCAAGGATAGTTGGCCTAACAGAAAATTTATAACATGTCAAAGTTTTGT
TAGCTACATCACGCAGACATTTATGTTTCGTACATGTCAAATATCAAAAT
TCGCTATGGTCAGAGCCCTTAAATAGAGAAAGTTGTCCGTGCCCCTTATA
AATGAGATACAGAAAACAACGCAACTATGCTACTAAGTATCCTAACGTAG
ATACTTAACTATTTCTCACTTAACTGAACTCGAATCGAACAAAATTTGAA
AATGTCGACACTCGTAGTCATGGATTTTCATAATTCTCTCTTCTTTTTTT
CGAGTCTGCAAAGATGAACTGAATTTAAAAAACCTACTTCGAATATCATT
CTGAGTATGACTTTAGTTTGTTTATTATTGTTTTTTTTTGGTTTTATTAA
CTGTTTTTATTTTTTTTCAGCTCATCGAAAAAGATTTTACAGGAACGTCA
ATTTAGAGAAGACAGACGGTGAGTTTATATTTTATATGTTACCAGTATGG
GACATTGGTCCAGAAAAAAGACTTGACAGAGGAAATTCTCTTTTCTTGAT
CTTCGTGAAATGTTCGAAAACATCTAAGGTATTAATTTCCATGAGTGGTA
ATTTTTTAAAAACAATAAACAATAAAACTGTAGACGCCAAGCTTCATTCT
GTTATTTTACATGAAATAATCTGCTACTACTCACTTATTGGACTCTTCCA
CCTCTCTTTGTATTTTAATGAACTTCCCTTTTTTCCGTACACAGAGGGAT
TCTTAGTACAACTCGATGGTAAAACAATAAAGACACCTTTACGTTTCAAA
TTATGTATACCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCA
CATGCAAACAAATGAAATCAATCCCTTCTCCATGCCTTTGGTTAGTACGA
ACTTTTCTATAAGAATATCAGGGTGATACTTTAATTGGATAGGTTTTTGC
GGGGTTTAATTTCGCGTTTTCGTGAATATTTGTAATTCTCGCAAAGATAC
AACCTGCGAAATCTCGTGTGATTGCTTACTTGGTAATTTAAATCCACTTA
AAATTTTCAAAATACTGATTCGCGAAGCTAAAGCTCATGAAAAGATTCAT
CCAATTAAAATATTGCTAGAAGAATATCCTGCGATGAGATCTTTCTCAGG
TTTGATTGACCTTGAGCTTTAGCAGGGAAATCAATTATCAATTCATTAAT
GTCGTGCTGCGTTTAAAAGAATATCCAACACTCAGCAACTATTCTTATAA
AAACCGTTTACTGTTGCTGGTTACATTTTTTTGATGATTCCATAAAGACA
AAGCAATGCCACAGCTTCGATATTCCATAGGTCAGCAGCGTAGACAGAAG
GGGCGCAAAATTTGTGTGGGAGAGCAGATTTGTATGACACAGCAATTATC
TTTTTACACTATGAATAGATGATTGCAGTGTCATAAAAATCTCCTCTCCT
ACACAAATTTTAAGCCTCTCCAGTCTACGCTACTCAATAGACATTAATAA
ATTCAATGATTTATCTATTTTTGTAGACGTCCATTTGTAACACAACCATA
GATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAATTATTACA
ATTTCTCCATTCGGATACCATATGGTTTGTGTTAAAAGATTGAAATTATT
TTGCCGCAATGGGATTCTTTTATACATAACAACAAAATACAGGGTCATAT
AGGGAGTCTGTCAAGAATTAATTTCCCTCCAGCATTCAAGTGCTGTTTGT
AAGCATTTGTCTATAACTGGTCCATTAAAACGCAATCTTCCAATGTGTAA
ATTGAATTCCTCTTTTAATGTATTTTCTCCTTTTGTGCGAAGTAAGTTGA
ATATTAAAAGTAACACTTTAAATTTTAAGCTAGGATATCTACTTTATAAC
ATTTGTCCAGCCTCAATACGTGGGTTACCTGAAGATAAAATTGGTCGAGG
ACATCGATTTCAAAGCCCCGAAGAGACTAGATCTGGAACTCCAGGATGGG
AAATGAAGCCACTTATTTCCAATCCAAAATACGTAACCCGCGTGTTTTTC
AAACAAATGCGGGGCAAACTTAAGGCTTCACTTTTTCTTGCTTGAGAAAA
GTTTGAAGATTCCTCTCTATCCCCTTCTAGGCTTCAAACTCAATGGCCGA
GAACCTTCTTTCTTTTTTATTTTATTTTATCGCTGTACTCTATTTCCAGC
TCACTTGCAGAAATGCCAGAATCGCTCGTTGAACGCCAAGACAAAGAATG
GAAACCTATTAGAGATTGGTTCTCAAAAACGTAAAAAATTTTCCATTTTA
TTATTTCCGTTTCACTAATGGAATTTTGTAAATTGACTCACCCAACCCAG
TCTCTTTCAAAAGCTAAGCTGGATAAAGTTTTTTACAATAAATAAGAAAT
TAGTGGAATGTTTAACATCGAATCCCTTTAATGCTTTCCATAAACCTACT
TTTTACGAATTAATCACTCGAAAAATATTTCTAATTCGCGAAATTTAATC
CAATCGATATACCAAATAAGCACAAATTCATGGTTAAAAACCATTTTTAG
GTTTAGATAATGGCGAAATTAAATCATTTTTCAAAACAATGACTGTGAAA
ATATAATTAATTGAAGTAATTGTTTTATTGTATTTGCCATCTTTTTGGCT
TTGAATTCAAATTATATCAATATATCAAAACATGATGCTTGAAGCCACTT
TTCCATCCTACACGCTTTTTTAATAAGAATAGTGTACTTTGGCTGAGGGT
GAGCATTATTATTATTTTTCTATTGTTTTAACAATAGTCCTATTGTTCTA
ACTCTGAAATCTCGCCCTGATATTCTTATAGAAGTTATTCTTATAAAATA
AAAAGCGTGTATTTACTTTAGATTCGAAGTTGAAGTCAATGCATCGTCTA
ATCTGTTCAATCTTTGTCAATCGGATGAAACAGTCGAAAGACTCGAAGAA
TATCTTCTCAAAATGAATTATTGGCAAATTAACGGTAAGTACAATATAGT
TTCTTTAAGTCGAACCTGTATTACTCGAACGACTCCTTAACTCGAGCGAG
GTTTCTCATCCCTTCAGTTAACAATGCCTCTTAAACCTTACTCCATAACT
CGAAACTTCTTTAACTCGAATAAGTTTGTGTTCCCCGTGCATGTTCGAGC
TATGGAGACTCAACTGTATAAGTTTATTCGAGGAGTAAATCACTTTTTTC
ACTTACACCCGTCTTAAACAAAGGAAAGAAGAGAAAAGTCAAATTCAATT
CTTGTTTTCCAACCGAACTCGAATTATTTTTCTCTCAAATTATAGTGCTT
TAAATTATTTTTTCAATGGTATTCGAATTGAAACTTTTGTTGAAAATTTG
CCAACGAAACAAAACTAAAGTCCAATTAAGTGTGCACGTGAAGTTTGTTT
TGCCTGCTATTTTCTAAGCAATACTTCAAATATAACAAATTTAATTATGT
AGCGTTAGAAAGGTAATCCAGAACATTATAATTTTTGGGAATAATTATCT
TAAAAAATTTAGAAAATGAAGATGAAAAATGGAGAAGAAAAACATGAACT
TTTTATCTTTTTGTGCTGAAAACTTCATTTTTGAGAATAAACTTAAGTGT
ACACTTAGCGAATGGACTTTAATGACCTTTTTTTCATTCTCAGGGCTACA
GAGTGGTATAGATGCAATCAAGTCGTTTATCTTACCGTTAGCTGTATTCC
ATGGACACATATCTGTTGAACGAGCTGTTTATTTATCAAGGCTTGAGTCT
GAATATCAGGTAAATAAAAAGCTTTTTCAGGAAGTATTTAAAAAACCTAT
TTTATTCCATCCAATTGACTTGGGAATTCGTAAGTAACGCAGAATTTCAA
ATCGGTGTATGACTTGAAAATTCTTTTGACAGCAGTACATTTCAAATTAG
CTGGCAGTAAATTTTCAATTGCGTATTACTTTTGATAGATTTCGAATTAG
ATAGCGATTTTATACTTTTTGGAAAGGCAATCCGGAGTGGAATATTATGC
CAAGGAACTTCTATAAAAATAGCCTCCTTTCGTGTCCAATATCTTTCGAC
TGAATTGTTTTTTTCGAAAAAGAATTTCACAGCTGACATGGGTAAACATT
GAAGCTTCTCAAGTCCAAAAATGGTGGTTTTAGCATTGCTAGATAAAAAG
CTGATTTTTTTCTTTTTCGTTTTTCATCTTTGTGTTTGAAAATTTTAGAA
AACTTTTATACGCATAATATTCCACTCCGGATTGCCCTTTCAAATGTTTT
ATGTGATTTTTTTGGTTTTTTCAGAGCGAGAAATGGGGCAAGTTTGAAGG
ATCGCACGACATTGATCAATATACACAGCAAGCGATGCTGGCTGCTGGTA
CACTTGTTTGTAACTTGTGTCGATTTGATATTTAAAGTTTTGTGGATGAA
ATATAGTCTTGTCATCTTTTTTTGTATATGCAGTGAAAATATATATTTTT
TATTCCAGAAAAATAGAGATATTAAAATTACAA

Coding sequence (CDS) from alignment at scaffold_234:269998..275330-

>TCONS_00053835 ID=TCONS_00053835|Name=TCONS_00053835|organism=Clytia hemisphaerica|type=CDS|length=6432bp|location=Sequence derived from alignment at scaffold_234:269998..275330- (Clytia hemisphaerica)
AGCGAGAAATGGGGCAAGTTTGAAGGATCGCACGACATTGATCAATATAC
ACAGCAAGCGATGCTGGCTGCTGGTACACTTGTTTGTAACTTGTGTCGAT
TTGATATTTAAGGCTACAGAGTGGTATAGATGCAATCAAGTCGTTTATCT
TACCGTTAGCTGTATTCCATGGACACATATCTGTTGAACGAGCTGTTTAT
TTATCAAGGCTTGAGTCTGAATATCAGATTCGAAGTTGAAGTCAATGCAT
CGTCTAATCTGTTCAATCTTTGTCAATCGGATGAAACAGTCGAAAGACTC
GAAGAATATCTTCTCAAAATGAATTATTGGCAAATTAACGCTCACTTGCA
GAAATGCCAGAATCGCTCGTTGAACGCCAAGACAAAGAATGGAAACCTAT
TAGAGATTGGTTCTCAAAAACACGTCCATTTGTAACACAACCATAGATAA
TCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAATTATTACAATTTC
TCCATTCGGATACCATATGAGGGATTCTTAGTACAACTCGATGGTAAAAC
AATAAAGACACCTTTACGTTTCAAATTATGTATACCACAGTACGATCTAG
CGTTGGCTGTCTCCAATGAATGGCACATGCAAACAAATGAAATCAATCCC
TTCTCCATGCCTTTGCTCATCGAAAAAGATTTTACAGGAACGTCAATTTA
GAGAAGACAGACGATGTTTGCCTCACTGCGACTAGTAAATAACAAGTTAC
AGACAATTTGTCAATGTCAAAAACTGCAGCAACGTACTATGTCTTATCTT
AAAGAGCGAGAAATGGGGCAAGTTTGAAGGATCGCACGACATTGATCAAT
ATACACAGCAAGCGATGCTGGCTGCTGGTACACTTGTTTGTAACTTGTGT
CGATTTGATATTTAAGGCTACAGAGTGGTATAGATGCAATCAAGTCGTTT
ATCTTACCGTTAGCTGTATTCCATGGACACATATCTGTTGAACGAGCTGT
TTATTTATCAAGGCTTGAGTCTGAATATCAGATTCGAAGTTGAAGTCAAT
GCATCGTCTAATCTGTTCAATCTTTGTCAATCGGATGAAACAGTCGAAAG
ACTCGAAGAATATCTTCTCAAAATGAATTATTGGCAAATTAACGCTCACT
TGCAGAAATGCCAGAATCGCTCGTTGAACGCCAAGACAAAGAATGGAAAC
CTATTAGAGATTGGTTCTCAAAAACACGTCCATTTGTAACACAACCATAG
ATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAATTATTACAA
TTTCTCCATTCGGATACCATATGAGGGATTCTTAGTACAACTCGATGGTA
AAACAATAAAGACACCTTTACGTTTCAAATTATGTATACCACAGTACGAT
CTAGCGTTGGCTGTCTCCAATGAATGGCACATGCAAACAAATGAAATCAA
TCCCTTCTCCATGCCTTTGCTCATCGAAAAAGATTTTACAGGAACGTCAA
TTTAGAGAAGACAGACGATGTTTGCCTCACTGCGACTAGTAAATAACAAG
TTACAGACAATTTGTCAATGTCAAAAACTGCAGCAACGTACTATGTCTTA
TCTTAAAGAGCGAGAAATGGGGCAAGTTTGAAGGATCGCACGACATTGAT
CAATATACACAGCAAGCGATGCTGGCTGCTGGTACACTTGTTTGTAACTT
GTGTCGATTTGATATTTAAGGCTACAGAGTGGTATAGATGCAATCAAGTC
GTTTATCTTACCGTTAGCTGTATTCCATGGACACATATCTGTTGAACGAG
CTGTTTATTTATCAAGGCTTGAGTCTGAATATCAGATTCGAAGTTGAAGT
CAATGCATCGTCTAATCTGTTCAATCTTTGTCAATCGGATGAAACAGTCG
AAAGACTCGAAGAATATCTTCTCAAAATGAATTATTGGCAAATTAACGCT
CACTTGCAGAAATGCCAGAATCGCTCGTTGAACGCCAAGACAAAGAATGG
AAACCTATTAGAGATTGGTTCTCAAAAACACGTCCATTTGTAACACAACC
ATAGATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAATTATT
ACAATTTCTCCATTCGGATACCATATGAGGGATTCTTAGTACAACTCGAT
GGTAAAACAATAAAGACACCTTTACGTTTCAAATTATGTATACCACAGTA
CGATCTAGCGTTGGCTGTCTCCAATGAATGGCACATGCAAACAAATGAAA
TCAATCCCTTCTCCATGCCTTTGCTCATCGAAAAAGATTTTACAGGAACG
TCAATTTAGAGAAGACAGACGATGTTTGCCTCACTGCGACTAGTAAATAA
CAAGTTACAGACAATTTGTCAATGTCAAAAACTGCAGCAACGTACTATGT
CTTATCTTAAAGAGCGAGAAATGGGGCAAGTTTGAAGGATCGCACGACAT
TGATCAATATACACAGCAAGCGATGCTGGCTGCTGGTACACTTGTTTGTA
ACTTGTGTCGATTTGATATTTAAGGCTACAGAGTGGTATAGATGCAATCA
AGTCGTTTATCTTACCGTTAGCTGTATTCCATGGACACATATCTGTTGAA
CGAGCTGTTTATTTATCAAGGCTTGAGTCTGAATATCAGATTCGAAGTTG
AAGTCAATGCATCGTCTAATCTGTTCAATCTTTGTCAATCGGATGAAACA
GTCGAAAGACTCGAAGAATATCTTCTCAAAATGAATTATTGGCAAATTAA
CGCTCACTTGCAGAAATGCCAGAATCGCTCGTTGAACGCCAAGACAAAGA
ATGGAAACCTATTAGAGATTGGTTCTCAAAAACACGTCCATTTGTAACAC
AACCATAGATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAAGAAT
TATTACAATTTCTCCATTCGGATACCATATGAGGGATTCTTAGTACAACT
CGATGGTAAAACAATAAAGACACCTTTACGTTTCAAATTATGTATACCAC
AGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCACATGCAAACAAAT
GAAATCAATCCCTTCTCCATGCCTTTGCTCATCGAAAAAGATTTTACAGG
AACGTCAATTTAGAGAAGACAGACGATGTTTGCCTCACTGCGACTAGTAA
ATAACAAGTTACAGACAATTTGTCAATGTCAAAAACTGCAGCAACGTACT
ATGTCTTATCTTAAAGAGCGAGAAATGGGGCAAGTTTGAAGGATCGCACG
ACATTGATCAATATACACAGCAAGCGATGCTGGCTGCTGGTACACTTGTT
TGTAACTTGTGTCGATTTGATATTTAAGGCTACAGAGTGGTATAGATGCA
ATCAAGTCGTTTATCTTACCGTTAGCTGTATTCCATGGACACATATCTGT
TGAACGAGCTGTTTATTTATCAAGGCTTGAGTCTGAATATCAGATTCGAA
GTTGAAGTCAATGCATCGTCTAATCTGTTCAATCTTTGTCAATCGGATGA
AACAGTCGAAAGACTCGAAGAATATCTTCTCAAAATGAATTATTGGCAAA
TTAACGCTCACTTGCAGAAATGCCAGAATCGCTCGTTGAACGCCAAGACA
AAGAATGGAAACCTATTAGAGATTGGTTCTCAAAAACACGTCCATTTGTA
ACACAACCATAGATAATCCAACCGAACTACCAAAAGAAGATCTAGTCAAA
GAATTATTACAATTTCTCCATTCGGATACCATATGAGGGATTCTTAGTAC
AACTCGATGGTAAAACAATAAAGACACCTTTACGTTTCAAATTATGTATA
CCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCACATGCAAAC
AAATGAAATCAATCCCTTCTCCATGCCTTTGCTCATCGAAAAAGATTTTA
CAGGAACGTCAATTTAGAGAAGACAGACGATGTTTGCCTCACTGCGACTA
GTAAATAACAAGTTACAGACAATTTGTCAATGTCAAAAACTGCAGCAACG
TACTATGTCTTATCTTAAAGAGCGAGAAATGGGGCAAGTTTGAAGGATCG
CACGACATTGATCAATATACACAGCAAGCGATGCTGGCTGCTGGTACACT
TGTTTGTAACTTGTGTCGATTTGATATTTAAGGCTACAGAGTGGTATAGA
TGCAATCAAGTCGTTTATCTTACCGTTAGCTGTATTCCATGGACACATAT
CTGTTGAACGAGCTGTTTATTTATCAAGGCTTGAGTCTGAATATCAGATT
CGAAGTTGAAGTCAATGCATCGTCTAATCTGTTCAATCTTTGTCAATCGG
ATGAAACAGTCGAAAGACTCGAAGAATATCTTCTCAAAATGAATTATTGG
CAAATTAACGCTCACTTGCAGAAATGCCAGAATCGCTCGTTGAACGCCAA
GACAAAGAATGGAAACCTATTAGAGATTGGTTCTCAAAAACACGTCCATT
TGTAACACAACCATAGATAATCCAACCGAACTACCAAAAGAAGATCTAGT
CAAAGAATTATTACAATTTCTCCATTCGGATACCATATGAGGGATTCTTA
GTACAACTCGATGGTAAAACAATAAAGACACCTTTACGTTTCAAATTATG
TATACCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCACATGC
AAACAAATGAAATCAATCCCTTCTCCATGCCTTTGCTCATCGAAAAAGAT
TTTACAGGAACGTCAATTTAGAGAAGACAGACGATGTTTGCCTCACTGCG
ACTAGTAAATAACAAGTTACAGACAATTTGTCAATGTCAAAAACTGCAGC
AACGTACTATGTCTTATCTTAAAGAGCGAGAAATGGGGCAAGTTTGAAGG
ATCGCACGACATTGATCAATATACACAGCAAGCGATGCTGGCTGCTGGTA
CACTTGTTTGTAACTTGTGTCGATTTGATATTTAAGGCTACAGAGTGGTA
TAGATGCAATCAAGTCGTTTATCTTACCGTTAGCTGTATTCCATGGACAC
ATATCTGTTGAACGAGCTGTTTATTTATCAAGGCTTGAGTCTGAATATCA
GATTCGAAGTTGAAGTCAATGCATCGTCTAATCTGTTCAATCTTTGTCAA
TCGGATGAAACAGTCGAAAGACTCGAAGAATATCTTCTCAAAATGAATTA
TTGGCAAATTAACGCTCACTTGCAGAAATGCCAGAATCGCTCGTTGAACG
CCAAGACAAAGAATGGAAACCTATTAGAGATTGGTTCTCAAAAACACGTC
CATTTGTAACACAACCATAGATAATCCAACCGAACTACCAAAAGAAGATC
TAGTCAAAGAATTATTACAATTTCTCCATTCGGATACCATATGAGGGATT
CTTAGTACAACTCGATGGTAAAACAATAAAGACACCTTTACGTTTCAAAT
TATGTATACCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATGGCAC
ATGCAAACAAATGAAATCAATCCCTTCTCCATGCCTTTGCTCATCGAAAA
AGATTTTACAGGAACGTCAATTTAGAGAAGACAGACGATGTTTGCCTCAC
TGCGACTAGTAAATAACAAGTTACAGACAATTTGTCAATGTCAAAAACTG
CAGCAACGTACTATGTCTTATCTTAAAGAGCGAGAAATGGGGCAAGTTTG
AAGGATCGCACGACATTGATCAATATACACAGCAAGCGATGCTGGCTGCT
GGTACACTTGTTTGTAACTTGTGTCGATTTGATATTTAAGGCTACAGAGT
GGTATAGATGCAATCAAGTCGTTTATCTTACCGTTAGCTGTATTCCATGG
ACACATATCTGTTGAACGAGCTGTTTATTTATCAAGGCTTGAGTCTGAAT
ATCAGATTCGAAGTTGAAGTCAATGCATCGTCTAATCTGTTCAATCTTTG
TCAATCGGATGAAACAGTCGAAAGACTCGAAGAATATCTTCTCAAAATGA
ATTATTGGCAAATTAACGCTCACTTGCAGAAATGCCAGAATCGCTCGTTG
AACGCCAAGACAAAGAATGGAAACCTATTAGAGATTGGTTCTCAAAAACA
CGTCCATTTGTAACACAACCATAGATAATCCAACCGAACTACCAAAAGAA
GATCTAGTCAAAGAATTATTACAATTTCTCCATTCGGATACCATATGAGG
GATTCTTAGTACAACTCGATGGTAAAACAATAAAGACACCTTTACGTTTC
AAATTATGTATACCACAGTACGATCTAGCGTTGGCTGTCTCCAATGAATG
GCACATGCAAACAAATGAAATCAATCCCTTCTCCATGCCTTTGCTCATCG
AAAAAGATTTTACAGGAACGTCAATTTAGAGAAGACAGACGATGTTTGCC
TCACTGCGACTAGTAAATAACAAGTTACAGACAATTTGTCAATGTCAAAA
ACTGCAGCAACGTACTATGTCTTATCTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033971XLOC_033971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053835-exon-scaffold_234-1575043694:275194..275330TCONS_00053835-exon-scaffold_234-1575043694:275194..275330Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:274013..274060TCONS_00053835-exon-scaffold_234-1575043694:274013..274060Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:273591..273736TCONS_00053835-exon-scaffold_234-1575043694:273591..273736Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:272857..272954TCONS_00053835-exon-scaffold_234-1575043694:272857..272954Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:272201..272281TCONS_00053835-exon-scaffold_234-1575043694:272201..272281Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:271497..271609TCONS_00053835-exon-scaffold_234-1575043694:271497..271609Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:270722..270837TCONS_00053835-exon-scaffold_234-1575043694:270722..270837Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1575043694:269998..270206TCONS_00053835-exon-scaffold_234-1575043694:269998..270206Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:275194..275330TCONS_00053835-exon-scaffold_234-1510915933:275194..275330Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:274013..274060TCONS_00053835-exon-scaffold_234-1510915933:274013..274060Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:273591..273736TCONS_00053835-exon-scaffold_234-1510915933:273591..273736Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:272857..272954TCONS_00053835-exon-scaffold_234-1510915933:272857..272954Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:272201..272281TCONS_00053835-exon-scaffold_234-1510915933:272201..272281Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:271497..271609TCONS_00053835-exon-scaffold_234-1510915933:271497..271609Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:270722..270837TCONS_00053835-exon-scaffold_234-1510915933:270722..270837Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1510915933:269998..270206TCONS_00053835-exon-scaffold_234-1510915933:269998..270206Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:275194..275330TCONS_00053835-exon-scaffold_234-1491911889:275194..275330Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:274013..274060TCONS_00053835-exon-scaffold_234-1491911889:274013..274060Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:273591..273736TCONS_00053835-exon-scaffold_234-1491911889:273591..273736Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:272857..272954TCONS_00053835-exon-scaffold_234-1491911889:272857..272954Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:272201..272281TCONS_00053835-exon-scaffold_234-1491911889:272201..272281Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:271497..271609TCONS_00053835-exon-scaffold_234-1491911889:271497..271609Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:270722..270837TCONS_00053835-exon-scaffold_234-1491911889:270722..270837Clytia hemisphaericaexon
TCONS_00053835-exon-scaffold_234-1491911889:269998..270206TCONS_00053835-exon-scaffold_234-1491911889:269998..270206Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053835-proteinTCONS_00053835-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:269998..275330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.9464	56.8336	40.9851	37.7044	10.6823	9.15752	11.1716	13.8101	13.9571	13.8806	17.9962	15.0273	11.6858	12.5337	14.6116	18.84	21.6956	29.736	5.9709	4.59263	13.1359	12.2258	48.2192	39.9849	22.0092	22.4028	9.08429	7.79815	24.2446	30.6732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011419ATP12_ATP_synth-F1-assembly
IPR023335ATPase_assmbl_ATP12_dom
Vocabulary: Biological Process
TermDefinition
GO:0043461proton-transporting ATP synthase complex assembly
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043461 proton-transporting ATP synthase complex assembly
Blast
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BLAST of TCONS_00053835 vs. Swiss-Prot (Human)
Match: ATPF2 (ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.298e-57
Identity = 94/231 (40.69%), Postives = 144/231 (62.34%), Query Frame = 2 
Query:  143 RKRFYRNVNLEKTDEGFLVQLDGKTIKTPLRFKLCIPQYDLALAVSNEWHMQTNEINPFSMPLTSICNTTIDNPTELPKEDLVKELLQFLHSDTICSLAEMPESLVERQDKEWKPIRDWFSKTFEVEVNASSNLFNLCQSDETVERLEEYLLKMNYWQINGLQSGIDAIKSFILPLAVFHGHISVERAVYLSRLESEYQSEKWGKFEGSHDIDQYTQQAMLAAGTLVCNLC 835
            RKRFY+NV++ + + GF + LD + +KTP      +P   LA+AV+ EW  Q + I  ++M LT++CNT++DNPT+  K+ L++  ++FL +DTIC   E PE+LVE Q  EW PI +W  K + VE+++S+++       +T E L  +L   N W + G++     +KS +L L +    ++VE+AV LSRLE EYQ +KWG  E +HD +    +A  AAGTL  +LC
Sbjct:   46 RKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLC 276
The following BLAST results are available for this feature:
BLAST of TCONS_00053835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATPF21.298e-5740.69ATP synthase mitochondrial F1 complex assembly fac... [more]
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