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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053765 ID=TCONS_00053765|Name=TCONS_00053765|organism=Clytia hemisphaerica|type=transcript|length=1567bp
GCCGAGTTGGCTACTAGCACAAAATATATACACCGGGTATAGATTATACT
ACACTCCCCCACATAAGTGAGAGAcccaaaataaaagaaatatcgTTTAA
AACCTATCAAAAATAGGATTGTTTAATATCTTGCAATGCGTTTGGCACAA
AAGTGATGCCCGCATAGTCTATATCATCAGTTTTGTTACTATGAATAATA
ACCAGTTTATTCACGGGACGTTTTAATTGTCCATTTGTAGTCTTGATTAG
CGTACCCCGTACTTTGCTGTCTTTTCCTTTGATTAATTCTAcaattttgc
ccattttccatTTTACTCTGGGCCCTTGATCATCGATAAGACAAACGTCT
CCAACATTAAGAGTTTCAGTTTTCATGTTCGTTTGGGTTTTACATCTCTT
TCGCGAAGACTTGTGAGATATCTGTGTTCCACTGTTCCCAAAAATACGAC
AAGGCACGCTTTATAGCGCCACAGTTTATTTCGTTGTCattctcattttc
atttggTCTCAATCTTCCTTCAGTATATAAGATGATTGGGTTTTAACGGC
TGTGCGCTTTCGTTGTCGTAAAGGTGCGTTGACGGACGATTGTTTAAGAT
GTTTTCGATACGTTTAAAGAAGTGTGTAAACGTCAGAATCTCTTTTCGTA
GAGATTTTCGTAAAATACGTCTGGTTGACTGTATCAGTCTTTCGAATACT
CCGCCACTCCACGGAGCAGCCTCAATGTTAAATTTCCAACGGATGAATCT
AGATTTTGCAAAGTCTTGTGTTGCATTATATGTGAAATTCGATCCGTTGT
CCGAGTTAATGACTTTTGGTGCGTTGTATCGATTGAAAAAGCGTTCCAAA
ATCCGTATGGGCACTTCTGAATCATAACTTGTAGCGAGATCCAAGTAAAC
GGCTCTCGTAGAGTAACATGTAATCAAGGCAATCCATGAAAGTTTGTTAA
TCACCAAAATTGTTTCTAACGAATACTGGTCTATTCCGATATTTTCAAAG
GCGAAACTCATATCAACACGTTCACGTGGTAGTTTTGGAGGTTGGGGATA
GATAtatctttttccttcaaataaTCGACAAATCAAGCATGAATTTATCA
GTTTTTTGATGAGTTGTCTACCTTTCGGGATCCAATATTGTGATCGAAGT
TCGTTCAGTGTATCTTTCGTTTTGTTGTGACCGACATTTTTGTGACTTTC
GAGCACAATTAGTTCAGCAAGTCGGCTATTTCGTGGTATTAGAATAGAAA
ATTTCGTGTCGAACGGAAGAGGTGCATTTCCTAATCTTCCTTTGCATCGT
AGAATACCGTGAGCGTCTGTGAAAACGTTGAGATTTCTCTTCAGTTGGTT
GTGCTCGGATGAGCTAAATTCTTTCTGGACTTCAAGGATCCATAGCTTCT
TGGCGTCCCTATATGATCGATTGATTCTTCGGCATCATGCCTCTTATTTA
GTTTAGTGTTTTGAACACTCTGTTTCAAGTTTCTCACGAACCTTAAAACC
TTGGCCGTAACCCGAAGTAAACGGGTTAACGAACCGAATCTTCTTGGATC
GAGGATGCCCAGTAAAT Run BLAST on NCBI protein sequence of TCONS_00053765-protein >TCONS_00053765-protein ID=TCONS_00053765-protein|Name=TCONS_00053765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MSFAFENIGIDQYSLETILVINKLSWIALITCYSTRAVYLDLATSYDSEV
PIRILERFFNRYNAPKVINSDNGSNFTYNATQDFAKSRFIRWKFNIEAAP
WSGGVFERLIQSTRRILRKSLRKEILTFTHFFKRIENILNNRPSTHLYDN
ESAQPLKPNHLIY Run BLAST on NCBI transcript from alignment at scaffold_233:1107426..1108992 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053765 ID=TCONS_00053765|Name=TCONS_00053765|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_233:1107426..1108992 (Clytia hemisphaerica)
ATTTACTGGGCATCCTCGATCCAAGAAGATTCGGTTCGTTAACCCGTTTA
CTTCGGGTTACGGCCAAGGTTTTAAGGTTCGTGAGAAACTTGAAACAGAG
TGTTCAAAACACTAAACTAAATAAGAGGCATGATGCCGAAGAATCAATCG
ATCATATAGGGACGCCAAGAAGCTATGGATCCTTGAAGTCCAGAAAGAAT
TTAGCTCATCCGAGCACAACCAACTGAAGAGAAATCTCAACGTTTTCACA
GACGCTCACGGTATTCTACGATGCAAAGGAAGATTAGGAAATGCACCTCT
TCCGTTCGACACGAAATTTTCTATTCTAATACCACGAAATAGCCGACTTG
CTGAACTAATTGTGCTCGAAAGTCACAAAAATGTCGGTCACAACAAAACG
AAAGATACACTGAACGAACTTCGATCACAATATTGGATCCCGAAAGGTAG
ACAACTCATCAAAAAACTGATAAATTCATGCTTGATTTGTCGAttatttg
aaggaaaaagataTATCTATCCCCAACCTCCAAAACTACCACGTGAACGT
GTTGATATGAGTTTCGCCTTTGAAAATATCGGAATAGACCAGTATTCGTT
AGAAACAATTTTGGTGATTAACAAACTTTCATGGATTGCCTTGATTACAT
GTTACTCTACGAGAGCCGTTTACTTGGATCTCGCTACAAGTTATGATTCA
GAAGTGCCCATACGGATTTTGGAACGCTTTTTCAATCGATACAACGCACC
AAAAGTCATTAACTCGGACAACGGATCGAATTTCACATATAATGCAACAC
AAGACTTTGCAAAATCTAGATTCATCCGTTGGAAATTTAACATTGAGGCT
GCTCCGTGGAGTGGCGGAGTATTCGAAAGACTGATACAGTCAACCAGACG
TATTTTACGAAAATCTCTACGAAAAGAGATTCTGACGTTTACACACTTCT
TTAAACGTATCGAAAACATCTTAAACAATCGTCCGTCAACGCACCTTTAC
GACAACGAAAGCGCACAGCCGTTAAAACCCAATCATCTTATATACTGAAG
GAAGATTGAGAccaaatgaaaatgagaatGACAACGAAATAAACTGTGGC
GCTATAAAGCGTGCCTTGTCGTATTTTTGGGAACAGTGGAACACAGATAT
CTCACAAGTCTTCGCGAAAGAGATGTAAAACCCAAACGAACATGAAAACT
GAAACTCTTAATGTTGGAGACGTTTGTCTTATCGATGATCAAGGGCCCAG
AGTAAAatggaaaatgggcaaaattgTAGAATTAATCAAAGGAAAAGACA
GCAAAGTACGGGGTACGCTAATCAAGACTACAAATGGACAATTAAAACGT
CCCGTGAATAAACTGGTTATTATTCATAGTAACAAAACTGATGATATAGA
CTATGCGGGCATCACTTTTGTGCCAAACGCATTGCAAGATATTAAACAAT
CCTATTTTTGATAGGTTTTAAAcgatatttcttttattttgggTCTCTCA
CTTATGTGGGGGAGTGTAGTATAATCTATACCCGGTGTATATATTTTGTG
CTAGTAGCCAACTCGGC Coding sequence (CDS) from alignment at scaffold_233:1107426..1108992 >TCONS_00053765 ID=TCONS_00053765|Name=TCONS_00053765|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_233:1107426..1108992 (Clytia hemisphaerica)
ATGAGTTTCGCCTTTGAAAATATCGGAATAGACCAGTATTCGTTAGAAAC
AATTTTGGTGATTAACAAACTTTCATGGATTGCCTTGATTACATGTTACT
CTACGAGAGCCGTTTACTTGGATCTCGCTACAAGTTATGATTCAGAAGTG
CCCATACGGATTTTGGAACGCTTTTTCAATCGATACAACGCACCAAAAGT
CATTAACTCGGACAACGGATCGAATTTCACATATAATGCAACACAAGACT
TTGCAAAATCTAGATTCATCCGTTGGAAATTTAACATTGAGGCTGCTCCG
TGGAGTGGCGGAGTATTCGAAAGACTGATACAGTCAACCAGACGTATTTT
ACGAAAATCTCTACGAAAAGAGATTCTGACGTTTACACACTTCTTTAAAC
GTATCGAAAACATCTTAAACAATCGTCCGTCAACGCACCTTTACGACAAC
GAAAGCGCACAGCCGTTAAAACCCAATCATCTTATATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053765-exon-scaffold_233-1491911889:1107426..1108992 | TCONS_00053765-exon-scaffold_233-1491911889:1107426..1108992 | Clytia hemisphaerica | exon |
| TCONS_00053765-exon-scaffold_233-1510915933:1107426..1108992 | TCONS_00053765-exon-scaffold_233-1510915933:1107426..1108992 | Clytia hemisphaerica | exon |
| TCONS_00053765-exon-scaffold_233-1575043694:1107426..1108992 | TCONS_00053765-exon-scaffold_233-1575043694:1107426..1108992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1107426..1108992 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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