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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053761 ID=TCONS_00053761|Name=TCONS_00053761|organism=Clytia hemisphaerica|type=transcript|length=1150bp
gtaaacataagCCTTTctttttatgataaaatttcAGATCTATTTAGTAC
TGTAATTTTTAAATGTTACAAAATATATGCATATAAAATGCACAAAACAA
GAAGgataatatgaaaaaaaaaagttaacaaaattcTACTTACAAAATgc
caaacaaaaatataaaacataaaTTACAgtgaaataaagataaaaaatta
gaaaatttgtaAATGAGAGGATCAAGGCCGTCACAAGAAGCTCatgttca
aaaaaattataaaaacatttttaagaattaaaatgaaaactgaaaattta
gacaAACCAacgttttgcaaagttttcAAGGAGTCGAAAATATATAGGTA
GTTCATTACattacaattaacaaaataatatatttaGTTCAGTAAAAGGC
ATGAAAATTACTACAGGGGAGAAAGTTAATCTTCATCAGTATCACTGTCA
TTGAAATATCCAGGCATTACTCTTTCATAATCTAAGTCTTTTCCTTCCCC
AAACTCCCATACCATGTATTGTGACGCGTTGACTTCTTTATATCGTTTAG
CTTCTCCTTCTTCAACTATCATGAAATCCTCTGAAAAGATCATCCTATAT
TTCCACATTGCTTCACCTTGCCATTTCGTTGGCGTCCAATCAATAATACC
AGTGAAAGTTCTTGTTTTGGAATCGTAATGGTGttggtcaaaatatttct
taggaCCTGGTCTTGAACCATCTTCTAGATCAGGCCACATATCACACTCC
GGACTTTCATAGGAAATATAGGGATTCGAAAGTGTTCCAAAATGGTATGA
AGCCAACCCTAGTGTATGAGCTTGAACATAAATACCGTCAATGATATTTG
TGATATGAGGAATTGAAAATAGTTCTTCATCATTTTCTCCATCTTCCAGA
GTAATGTCAGATGCTTTGGAATCTTGTCGACAATAAGGACATTTCACTTT
GAATGGATGATTGATAATCTTTTTGATACATGATTTGCAGAAATTGTGAG
AGCATTTCAAAGTACATTTATTTGAAATATGATCCAAGCATATAGGGCAT
TCATTTTTTGTGTCTGTCATTTTGCAGCATTGTCAACTAACAACAATTTT
TGTTCCTTAAAATTATTTAAGTTTGTTTCTTCCTAAATATGCATACAATg Run BLAST on NCBI protein sequence of TCONS_00053761-protein >TCONS_00053761-protein ID=TCONS_00053761-protein|Name=TCONS_00053761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MTDTKNECPICLDHISNKCTLKCSHNFCKSCIKKIINHPFKVKCPYCRQD
SKASDITLEDGENDEELFSIPHITNIIDGIYVQAHTLGLASYHFGTLSNP
YISYESPECDMWPDLEDGSRPGPKKYFDQHHYDSKTRTFTGIIDWTPTKW
QGEAMWKYRMIFSEDFMIVEEGEAKRYKEVNASQYMVWEFGEGKDLDYER
VMPGYFNDSDTDED Run BLAST on NCBI transcript from alignment at scaffold_233:984921..986070 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053761 ID=TCONS_00053761|Name=TCONS_00053761|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at scaffold_233:984921..986070 (Clytia hemisphaerica)
cATTGTATGCATATTTAGGAAGAAACAAACTTAAATAATTTTAAGGAACA
AAAATTGTTGTTAGTTGACAATGCTGCAAAATGACAGACACAAAAAATGA
ATGCCCTATATGCTTGGATCATATTTCAAATAAATGTACTTTGAAATGCT
CTCACAATTTCTGCAAATCATGTATCAAAAAGATTATCAATCATCCATTC
AAAGTGAAATGTCCTTATTGTCGACAAGATTCCAAAGCATCTGACATTAC
TCTGGAAGATGGAGAAAATGATGAAGAACTATTTTCAATTCCTCATATCA
CAAATATCATTGACGGTATTTATGTTCAAGCTCATACACTAGGGTTGGCT
TCATACCATTTTGGAACACTTTCGAATCCCTATATTTCCTATGAAAGTCC
GGAGTGTGATATGTGGCCTGATCTAGAAGATGGTTCAAGACCAGGtccta
agaaatattttgaccaaCACCATTACGATTCCAAAACAAGAACTTTCACT
GGTATTATTGATTGGACGCCAACGAAATGGCAAGGTGAAGCAATGTGGAA
ATATAGGATGATCTTTTCAGAGGATTTCATGATAGTTGAAGAAGGAGAAG
CTAAACGATATAAAGAAGTCAACGCGTCACAATACATGGTATGGGAGTTT
GGGGAAGGAAAAGACTTAGATTATGAAAGAGTAATGCCTGGATATTTCAA
TGACAGTGATACTGATGAAGATTAACTTTCTCCCCTGTAGTAATTTTCAT
GCCTTTTACTGAACtaaatatattattttgttaattgtaatGTAATGAAC
TACCTATATATTTTCGACTCCTTgaaaactttgcaaaacgtTGGTTtgtc
taaattttcagttttcattttaattcttaaaaatgtttttataatttttt
tgaacatGAGCTTCTTGTGACGGCCTTGATCCTCTCATTtacaaattttc
taattttttatctttatttcacTGTAAtttatgttttatatttttgtttg
gcATTTTGTAAGTAgaattttgttaacttttttttttcatattatcCTTC
TTGTTTTGTGCATTTTATATGCATATATTTTGTAACATTTAAAAATTACA
GTACTAAATAGATCTgaaattttatcataaaaagAAAGGcttatgtttac
Coding sequence (CDS) from alignment at scaffold_233:984921..986070 >TCONS_00053761 ID=TCONS_00053761|Name=TCONS_00053761|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_233:984921..986070 (Clytia hemisphaerica)
ATGACAGACACAAAAAATGAATGCCCTATATGCTTGGATCATATTTCAAA
TAAATGTACTTTGAAATGCTCTCACAATTTCTGCAAATCATGTATCAAAA
AGATTATCAATCATCCATTCAAAGTGAAATGTCCTTATTGTCGACAAGAT
TCCAAAGCATCTGACATTACTCTGGAAGATGGAGAAAATGATGAAGAACT
ATTTTCAATTCCTCATATCACAAATATCATTGACGGTATTTATGTTCAAG
CTCATACACTAGGGTTGGCTTCATACCATTTTGGAACACTTTCGAATCCC
TATATTTCCTATGAAAGTCCGGAGTGTGATATGTGGCCTGATCTAGAAGA
TGGTTCAAGACCAGGtcctaagaaatattttgaccaaCACCATTACGATT
CCAAAACAAGAACTTTCACTGGTATTATTGATTGGACGCCAACGAAATGG
CAAGGTGAAGCAATGTGGAAATATAGGATGATCTTTTCAGAGGATTTCAT
GATAGTTGAAGAAGGAGAAGCTAAACGATATAAAGAAGTCAACGCGTCAC
AATACATGGTATGGGAGTTTGGGGAAGGAAAAGACTTAGATTATGAAAGA
GTAATGCCTGGATATTTCAATGACAGTGATACTGATGAAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053761-exon-scaffold_233-1491911889:984921..986070 | TCONS_00053761-exon-scaffold_233-1491911889:984921..986070 | Clytia hemisphaerica | exon |
| TCONS_00053761-exon-scaffold_233-1510915933:984921..986070 | TCONS_00053761-exon-scaffold_233-1510915933:984921..986070 | Clytia hemisphaerica | exon |
| TCONS_00053761-exon-scaffold_233-1575043694:984921..986070 | TCONS_00053761-exon-scaffold_233-1575043694:984921..986070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:984921..986070 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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