TCONS_00053759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053759
Unique NameTCONS_00053759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053759 ID=TCONS_00053759|Name=TCONS_00053759|organism=Clytia hemisphaerica|type=transcript|length=824bp
TTTATATTCTTTCCcttaattttaataaaacttgtacactataacaataa
tatttattttaaattttatatgtgGCGAATATGGGCTCACACCTAATGCT
ACTTAActaaatagatagatagatccAAAGTTCCAAATTTCAGACATCTG
CACTCTGTGGAAgccatataaaaatgaaaaaaatttgaattgggAAAACT
TCTGTTCATTACAGTTagtcatcaaactaaaataattGAGAGCAGGCTAG
AAGGATACCTGTAGTTTAACTAAATAATTTTAGTATGATTGACCACTGCT
GGGCGCATGACATTTAGAGGATTTGTATACCTTAAAAAGCCATTTATATA
TTGATTTTAAGGATACCAGAAagtttgaaatcaaattttgaaattatcat
TTCAATATGGCTTCCACAGAGTGCAGATGTCTTGAATTTGGAACTTTGGA
TGTCAATATCTAATGATAGATTCGCCGttgataacttttttcaaatgttt
ttcattatAGCTTTTAATGGattaagtttcatttttatgCAGGAATCCCT
TTAATTTCCACAAAACGGAGCAAAGNttgataacttttttcaaatgtttt
tcattatAGCTTTTAATGGattaagtttcatttttatgCAGGAATCCCTT
TAATTTCCACAAAACGGAGCAAATTTTATACTCgcaaaaaataagaatgt
tTTTAAGTATATTTCCCCTTCAACTCTgagaatattattttttttttata
aaaactgacattttctttcagtttcttGCTCAtataaattgaatttgtca
TTATGTCTAACAATCAAGTTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_233:968367..969190

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053759 ID=TCONS_00053759|Name=TCONS_00053759|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at scaffold_233:968367..969190 (Clytia hemisphaerica)
AAAAAACTTGATTGTTAGACATAAtgacaaattcaatttataTGAGCaag
aaactgaaagaaaatgtcagtttttataaaaaaaaaataatattctcAGA
GTTGAAGGGGAAATATACTTAAAaacattcttattttttgcGAGTATAAA
ATTTGCTCCGTTTTGTGGAAATTAAAGGGATTCCTGcataaaaatgaaac
ttaatCCATTAAAAGCTataatgaaaaacatttgaaaaaagttatcaaNC
TTTGCTCCGTTTTGTGGAAATTAAAGGGATTCCTGcataaaaatgaaact
taatCCATTAAAAGCTataatgaaaaacatttgaaaaaagttatcaaCGG
CGAATCTATCATTAGATATTGACATCCAAAGTTCCAAATTCAAGACATCT
GCACTCTGTGGAAGCCATATTGAAatgataatttcaaaatttgatttcaa
actTTCTGGTATCCTTAAAATCAATATATAAATGGCTTTTTAAGGTATAC
AAATCCTCTAAATGTCATGCGCCCAGCAGTGGTCAATCATACTAAAATTA
TTTAGTTAAACTACAGGTATCCTTCTAGCCTGCTCTCaattattttagtt
tgatgactAACTGTAATGAACAGAAGTTTTcccaattcaaatttttttca
tttttatatggcTTCCACAGAGTGCAGATGTCTGAAATTTGGAACTTTgg
atctatctatctatttagTTAAGTAGCATTAGGTGTGAGCCCATATTCGC
cacatataaaatttaaaataaatattattgttatagtgtacaagttttat
taaaattaagGGAAAGAATATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033921XLOC_033921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053759-exon-scaffold_233-1491911889:968367..969190TCONS_00053759-exon-scaffold_233-1491911889:968367..969190Clytia hemisphaericaexon
TCONS_00053759-exon-scaffold_233-1510915933:968367..969190TCONS_00053759-exon-scaffold_233-1510915933:968367..969190Clytia hemisphaericaexon
TCONS_00053759-exon-scaffold_233-1575043694:968367..969190TCONS_00053759-exon-scaffold_233-1575043694:968367..969190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:968367..969190 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60477	1.15431	0.627002	0.702646	14.8335	6.20739	4.66788	5.63186	1.5324	1.52135	2.33066	1.65285	1.66624	0.747202	0.849337	0.938636	1.45781	0.844157	0.634251	0.656543	1.73024	2.37038	1.597	0.961972	1.43559	4.29518	3.55438	1.64341	1.98816	1.20258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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