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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053753 ID=TCONS_00053753|Name=TCONS_00053753|organism=Clytia hemisphaerica|type=transcript|length=2738bp
GCCATTCTATATCAATCCAAACTCCCACCGTTGGTGAATGGGATTCAAAA
ACCAATGAAACCTGGCGGCTATTCAGATAGTGGTGCCGATATTGCTTACC
AGCTACAGAAGTTTAAAGTACCTATCATCACTGCTAACTCTGTCCCTTCA
GTGGATCAAGACTTTGATTGGGTGTTTCCGGACAACAAGGAAGGAATAGC
AGAAGCTTTAAAGAAAGGAGCCACTTGTTTTTGGTTGAATACAGTGCTTT
ATAAGGGACACCCTGTGGAAAGCTTCTTCGGGAAAGATATCGAGTTTGTT
GGTCAATCACCGAACAATTTGGACAAATATGATGATAAGATGTTGACCAG
TGGATTGTTGAAAGCAAATGGACTGTCAGTTCAACCTCAAAGACTTGTTT
CAATCCAACAGATGTGTGATTTACCACAAGATTTCCATTTCCCATGCATC
ATTAAACCAGTTCGGGGACGAGGTAGTCAAGGAGTTGTTGTGGTTCGAAA
TCAAGAGGAAATGAATGAGCAGTTGAATCGATTGTTTTCAGCCAAAGAAT
TCGGCAATGCTTTGTACATTGAAAACTATCTTGAAGGGCAAGAAATCACT
GTTACAGTCATGCCTCCTGGTAGATACTTCATTGGGAATAAAACAGTGGA
AAAAAGTACACCATGGTCTTTGCCAGCTGTGAAACGATTCAACCATGTCA
ACGGAATCGCACCTTCGAATGGCGATGTTGCTGTCTCCGAGAACAGCTCC
GTCCTCGAAGATCATGAACTAGAATCAAAAGAAATCCAAATAGTATACGC
agaatgtgaaaaagcttttaGTTTGGTAGGCGCCAGGGCACCCATACGAA
TCGACAGCAGAGCAGATGAAGAAGGCAAGTATTGGTTATTAGACCTCAAT
ATGAAGCCAAACATCACAGGAGCTTGTAGACCTCATCGACAGAACCAAGA
TAGTTTGACGGCCATTGCAGCAAGGAAAATCGGATGGAGTTATGGTGATC
TTTTAATGAACATTCACCAACAAAGGTGGAAGTATTAGTAGAtcaatttt
atacttttttaaaaGAGGGGCTGGGCCCTATATTTATACATAAtttattt
tacatattttctttctttaataattaagtAAATCAATGattattatttca
aataaatatTGGACATGAAAGTATATACATTTTACACAAATAAATTATag
ataaatagaaaaaaagagcTGTATATACTATCGTTTGCCATCCTTCCTCA
GATATATCAGTATTTATCATGCCATTTTCGGATGTATTCTCCGAACTGAT
TTTCTTCTCCAAGGCATAGATTCGGAGCATCAGTGTTCAGCCTGTTTTTT
CGATATTGATTTTAATTTCGTCTTTAAGATCGAGCACACCATTATCTTTG
ACTTTCACAAATTCCCGATAATCTCGCATTAATACCAGCATCTCGTCAAA
CACAGcttcaatcttttctttcttttctctaACTGAAATAGAAGTCTTTT
GGTGACTTCGGTTGTATAGAGTTATAAGCAAGCTCACAAACAAAGCTGCA
ACAGCAAGCCCAATCCCTATTTGTACAGGAAGATTATCTTCGAAAATCTG
GTCCGCGTTTCCATAATAAAGCGTTTCAATGATCAGTCTTCGTTTATACA
TATCCATCGTTGATGTAATAATTTCGTATTTGTACTTGCTGAATATGCAG
TCCATAATTTCCTCACTTTTTGGGAAGGCGTCTTTATGGACTAGGAAATC
GAACGGCACCTGACCATCCAGTTCTCCCGTAATAACCAACGGATTCTTAA
CATTGGGGTTTCGAATGTCATGTTGGCGCCATGTTGCGACGTCGTGTGGT
AAAACCGCCGCGTACACTTTCTCCTCGCGAACTGcattaatgacgtcatc
ataggTATCATAAAGTTTTGGTTTAGCGAAATAATCAAGCTGAACATATC
GTTCTTCGTGCGAGTCTCGAACAACAGCCACTTCCTGCCCCTCGATACTC
AAACCTTCCGTTCCTGTAACCACATTGGTCAGTGTAGCAGTCAACATAGC
TGCCATAATTAATCCAACAAACATCCAAATGACGGAAAGAACTCGACCGA
AAAAACTTACGGCAACGATATCTCCATATCCAACCGTTGTCATAGTAACG
AAACTCCAATACAAACCCAACATCGGGCCACCTGATGTTTTGAAATTATC
ATTGGAGGACCGCTCAAAAACCCATAGCAACAAACCAGCGTACACTGCGA
ACATGACGGCGATAATGATAATGGTATAGCAGTACGGAATCCCTTGTAGA
ATTTTATTGGGAAGCCAGATTCTTGACCTTGGTTGAATTACAGCTAAACC
CTCACTTGAAACACCAACCATGACTGTCAAATTTCTCCTCAGAAAAGCGA
ACGGCCCTTTCTTGATTTTGTCTACATCGTGTGGAAACCATGCTGCAGCA
TTGGAACTGGAAATGTTAGCGAGAATTCCATCCCCTTTAAGTGTTTTTGA
TTCAAGCGTCTTTTGGAATTCATTTCTCGATTTAAGGCTAACGTCATAGG
ATAAGATACGATTCTGTGAGATGTTACAGTAGCTTattgctttcaagaaa
atgGTAGGAAAGATTCCTTCGTAAATCCCCAGCGATGAGTTGTATTTGAT
GTAGGGTTCTACTTCCCAAAAGACACCATGCCATTGATTCGGTTTAGAGG
TTTCTCCAAGTGCTATAAAAGCCACGAGATAACATAGA Run BLAST on NCBI protein sequence of TCONS_00053753-protein >TCONS_00053753-protein ID=TCONS_00053753-protein|Name=TCONS_00053753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
LCYLVAFIALGETSKPNQWHGVFWEVEPYIKYNSSLGIYEGIFPTIFLKA
ISYCNISQNRILSYDVSLKSRNEFQKTLESKTLKGDGILANISSSNAAAW
FPHDVDKIKKGPFAFLRRNLTVMVGVSSEGLAVIQPRSRIWLPNKILQGI
PYCYTIIIIAVMFAVYAGLLLWVFERSSNDNFKTSGGPMLGLYWSFVTMT
TVGYGDIVAVSFFGRVLSVIWMFVGLIMAAMLTATLTNVVTGTEGLSIEG
QEVAVVRDSHEERYVQLDYFAKPKLYDTYDDVINAVREEKVYAAVLPHDV
ATWRQHDIRNPNVKNPLVITGELDGQVPFDFLVHKDAFPKSEEIMDCIFS
KYKYEIITSTMDMYKRRLIIETLYYGNADQIFEDNLPVQIGIGLAVAALF
VSLLITLYNRSHQKTSISVREKKEKIEAVFDEMLVLMRDYREFVKVKDNG
VLDLKDEIKINIEKTG Run BLAST on NCBI transcript from alignment at scaffold_233:891796..894533 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053753 ID=TCONS_00053753|Name=TCONS_00053753|organism=Clytia hemisphaerica|type=transcript|length=2738bp|location=Sequence derived from alignment at scaffold_233:891796..894533 (Clytia hemisphaerica)
TCTATGTTATCTCGTGGCTTTTATAGCACTTGGAGAAACCTCTAAACCGA
ATCAATGGCATGGTGTCTTTTGGGAAGTAGAACCCTACATCAAATACAAC
TCATCGCTGGGGATTTACGAAGGAATCTTTCCTACcattttcttgaaagc
aatAAGCTACTGTAACATCTCACAGAATCGTATCTTATCCTATGACGTTA
GCCTTAAATCGAGAAATGAATTCCAAAAGACGCTTGAATCAAAAACACTT
AAAGGGGATGGAATTCTCGCTAACATTTCCAGTTCCAATGCTGCAGCATG
GTTTCCACACGATGTAGACAAAATCAAGAAAGGGCCGTTCGCTTTTCTGA
GGAGAAATTTGACAGTCATGGTTGGTGTTTCAAGTGAGGGTTTAGCTGTA
ATTCAACCAAGGTCAAGAATCTGGCTTCCCAATAAAATTCTACAAGGGAT
TCCGTACTGCTATACCATTATCATTATCGCCGTCATGTTCGCAGTGTACG
CTGGTTTGTTGCTATGGGTTTTTGAGCGGTCCTCCAATGATAATTTCAAA
ACATCAGGTGGCCCGATGTTGGGTTTGTATTGGAGTTTCGTTACTATGAC
AACGGTTGGATATGGAGATATCGTTGCCGTAAGTTTTTTCGGTCGAGTTC
TTTCCGTCATTTGGATGTTTGTTGGATTAATTATGGCAGCTATGTTGACT
GCTACACTGACCAATGTGGTTACAGGAACGGAAGGTTTGAGTATCGAGGG
GCAGGAAGTGGCTGTTGTTCGAGACTCGCACGAAGAACGATATGTTCAGC
TTGATTATTTCGCTAAACCAAAACTTTATGATAcctatgatgacgtcatt
aatgCAGTTCGCGAGGAGAAAGTGTACGCGGCGGTTTTACCACACGACGT
CGCAACATGGCGCCAACATGACATTCGAAACCCCAATGTTAAGAATCCGT
TGGTTATTACGGGAGAACTGGATGGTCAGGTGCCGTTCGATTTCCTAGTC
CATAAAGACGCCTTCCCAAAAAGTGAGGAAATTATGGACTGCATATTCAG
CAAGTACAAATACGAAATTATTACATCAACGATGGATATGTATAAACGAA
GACTGATCATTGAAACGCTTTATTATGGAAACGCGGACCAGATTTTCGAA
GATAATCTTCCTGTACAAATAGGGATTGGGCTTGCTGTTGCAGCTTTGTT
TGTGAGCTTGCTTATAACTCTATACAACCGAAGTCACCAAAAGACTTCTA
TTTCAGTtagagaaaagaaagaaaagattgaagCTGTGTTTGACGAGATG
CTGGTATTAATGCGAGATTATCGGGAATTTGTGAAAGTCAAAGATAATGG
TGTGCTCGATCTTAAAGACGAAATTAAAATCAATATCGAAAAAACAGGCT
GAACACTGATGCTCCGAATCTATGCCTTGGAGAAGAAAATCAGTTCGGAG
AATACATCCGAAAATGGCATGATAAATACTGATATATCTGAGGAAGGATG
GCAAACGATAGTATATACAgctctttttttctatttatctATAATTTATT
TGTGTAAAATGTATATACTTTCATGTCCAatatttatttgaaataataat
CATTGATTTacttaattattaaagaaagaaaatatgtaaaataaaTTATG
TATAAATATAGGGCCCAGCCCCTCttttaaaaaagtataaaattgaTCTA
CTAATACTTCCACCTTTGTTGGTGAATGTTCATTAAAAGATCACCATAAC
TCCATCCGATTTTCCTTGCTGCAATGGCCGTCAAACTATCTTGGTTCTGT
CGATGAGGTCTACAAGCTCCTGTGATGTTTGGCTTCATATTGAGGTCTAA
TAACCAATACTTGCCTTCTTCATCTGCTCTGCTGTCGATTCGTATGGGTG
CCCTGGCGCCTACCAAACtaaaagctttttcacattctGCGTATACTATT
TGGATTTCTTTTGATTCTAGTTCATGATCTTCGAGGACGGAGCTGTTCTC
GGAGACAGCAACATCGCCATTCGAAGGTGCGATTCCGTTGACATGGTTGA
ATCGTTTCACAGCTGGCAAAGACCATGGTGTACTTTTTTCCACTGTTTTA
TTCCCAATGAAGTATCTACCAGGAGGCATGACTGTAACAGTGATTTCTTG
CCCTTCAAGATAGTTTTCAATGTACAAAGCATTGCCGAATTCTTTGGCTG
AAAACAATCGATTCAACTGCTCATTCATTTCCTCTTGATTTCGAACCACA
ACAACTCCTTGACTACCTCGTCCCCGAACTGGTTTAATGATGCATGGGAA
ATGGAAATCTTGTGGTAAATCACACATCTGTTGGATTGAAACAAGTCTTT
GAGGTTGAACTGACAGTCCATTTGCTTTCAACAATCCACTGGTCAACATC
TTATCATCATATTTGTCCAAATTGTTCGGTGATTGACCAACAAACTCGAT
ATCTTTCCCGAAGAAGCTTTCCACAGGGTGTCCCTTATAAAGCACTGTAT
TCAACCAAAAACAAGTGGCTCCTTTCTTTAAAGCTTCTGCTATTCCTTCC
TTGTTGTCCGGAAACACCCAATCAAAGTCTTGATCCACTGAAGGGACAGA
GTTAGCAGTGATGATAGGTACTTTAAACTTCTGTAGCTGGTAAGCAATAT
CGGCACCACTATCTGAATAGCCGCCAGGTTTCATTGGTTTTTGAATCCCA
TTCACCAACGGTGGGAGTTTGGATTGATATAGAATGGC Coding sequence (CDS) from alignment at scaffold_233:891796..894533 >TCONS_00053753 ID=TCONS_00053753|Name=TCONS_00053753|organism=Clytia hemisphaerica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_233:891796..894533 (Clytia hemisphaerica)
CTATGTTATCTCGTGGCTTTTATAGCACTTGGAGAAACCTCTAAACCGAA
TCAATGGCATGGTGTCTTTTGGGAAGTAGAACCCTACATCAAATACAACT
CATCGCTGGGGATTTACGAAGGAATCTTTCCTACcattttcttgaaagca
atAAGCTACTGTAACATCTCACAGAATCGTATCTTATCCTATGACGTTAG
CCTTAAATCGAGAAATGAATTCCAAAAGACGCTTGAATCAAAAACACTTA
AAGGGGATGGAATTCTCGCTAACATTTCCAGTTCCAATGCTGCAGCATGG
TTTCCACACGATGTAGACAAAATCAAGAAAGGGCCGTTCGCTTTTCTGAG
GAGAAATTTGACAGTCATGGTTGGTGTTTCAAGTGAGGGTTTAGCTGTAA
TTCAACCAAGGTCAAGAATCTGGCTTCCCAATAAAATTCTACAAGGGATT
CCGTACTGCTATACCATTATCATTATCGCCGTCATGTTCGCAGTGTACGC
TGGTTTGTTGCTATGGGTTTTTGAGCGGTCCTCCAATGATAATTTCAAAA
CATCAGGTGGCCCGATGTTGGGTTTGTATTGGAGTTTCGTTACTATGACA
ACGGTTGGATATGGAGATATCGTTGCCGTAAGTTTTTTCGGTCGAGTTCT
TTCCGTCATTTGGATGTTTGTTGGATTAATTATGGCAGCTATGTTGACTG
CTACACTGACCAATGTGGTTACAGGAACGGAAGGTTTGAGTATCGAGGGG
CAGGAAGTGGCTGTTGTTCGAGACTCGCACGAAGAACGATATGTTCAGCT
TGATTATTTCGCTAAACCAAAACTTTATGATAcctatgatgacgtcatta
atgCAGTTCGCGAGGAGAAAGTGTACGCGGCGGTTTTACCACACGACGTC
GCAACATGGCGCCAACATGACATTCGAAACCCCAATGTTAAGAATCCGTT
GGTTATTACGGGAGAACTGGATGGTCAGGTGCCGTTCGATTTCCTAGTCC
ATAAAGACGCCTTCCCAAAAAGTGAGGAAATTATGGACTGCATATTCAGC
AAGTACAAATACGAAATTATTACATCAACGATGGATATGTATAAACGAAG
ACTGATCATTGAAACGCTTTATTATGGAAACGCGGACCAGATTTTCGAAG
ATAATCTTCCTGTACAAATAGGGATTGGGCTTGCTGTTGCAGCTTTGTTT
GTGAGCTTGCTTATAACTCTATACAACCGAAGTCACCAAAAGACTTCTAT
TTCAGTtagagaaaagaaagaaaagattgaagCTGTGTTTGACGAGATGC
TGGTATTAATGCGAGATTATCGGGAATTTGTGAAAGTCAAAGATAATGGT
GTGCTCGATCTTAAAGACGAAATTAAAATCAATATCGAAAAAACAGGCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053753-exon-scaffold_233-1491911889:891796..894533 | TCONS_00053753-exon-scaffold_233-1491911889:891796..894533 | Clytia hemisphaerica | exon |
| TCONS_00053753-exon-scaffold_233-1510915933:891796..894533 | TCONS_00053753-exon-scaffold_233-1510915933:891796..894533 | Clytia hemisphaerica | exon |
| TCONS_00053753-exon-scaffold_233-1575043694:891796..894533 | TCONS_00053753-exon-scaffold_233-1575043694:891796..894533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:891796..894533 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013099 | K_chnl_dom |
Blast
The following BLAST results are available for this feature:
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