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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053750 ID=TCONS_00053750|Name=TCONS_00053750|organism=Clytia hemisphaerica|type=transcript|length=1367bp
ttttgcgaccctacctgggactcgtgggggttaaaaaaggtaccctgacc
agcggagcatccccgtagcccatcttgccctagtagcCCCCCCGGGTGCA
TGAGTGTTTCGCCATTGTGATGGATTTTTGCCAGAGGATCCACACCGGCG
CCAATAAAGGCTTCCATTAATTCAATATTACCGTATATCGCAGCCAAATG
AAAAGCGTTTGAATTAAACCAAGAACGACGAAAAGAATCAATTACATGTC
GATATAAACCAGGTTCCATATAGTCCCTTGTCTGTTCCCTATCAAAAGGG
AAACCTAATTCAGAAAAGACTTGTATAGCATGACAACTTCTCTCCATTAC
GACTGGTGAAGCTTCCTCCATATCAACAAGAGACAATTTTATGGAAAGGA
CAAAACTTGACATCATCCCACTTTCTTTGATCTCTTGTGAAAGTCTCATC
AAATTAGTATGAAATGTTTTCGACTCCATGTTAGAAAGGAGAAGATCAAA
TCGATTTGTCATtaaatcgaggtttttatcgaGGAACATTCTCTCTTGGC
ATTCTTCTGCTAACTCTTCCTGGTTGAATTCCTTGATTTCTTTGATAAAA
TTTCGGTTTTTACTTGGATTGTGCGTAGATTTAGTACATGAGATAATTTC
CTTGAAAAgtaattctttcattttttgattCAAGTTTgttagttgaatgt
tttcagTCAAGACAATACCATCGACAATTTCTTTAAGATTCAGCTCATCA
GCAAAAAATTCCCACTCCCAGCCTTGGCTAGAAATATGCCCTCCGATCTT
TTGTTCCAAATCTTTGACCAGGTCTTCAAGGCAAATCAAATGACAATATT
CTATCAGTTCATACCAAAACTGTATATTGTCTTGTCCTTCCCAATTCATT
TTACAAAGGTAAAGATACTCTCTGACAGCTGCGAATACGGGCGCGCTGAC
ATCTTTTAAAACGAGCACATTGCCTTGCACCTCCTTCATCTGCGAAGACA
TTAAACAACGAAAATATTCTACTTTTCCCAAAATGCACTTGTGACAATCA
AATCTTATGCCATCGATCAATACACAAATATCGGAAAAAGTGTTATCATT
CATCAAAGATGTCATTTGCTCAGTCAATCTTGTTAAATGATCGGGTTTTT
CTACTGAAGGAGCAATGGGGTTGGTCTTGGGTTCCAGACTCAAAAAGAGT
ggatttgttaattttttgaatgtcaCTTCCATCACATCAGTTACTCCAGC
TTGTTCCAAATTCCAAAACAAATCTTTTCGCGTGTCTGCCTCCACAATGG
ATAAGCTGAGATCAGACCCTCGTACGACGTATATTGgcatttttgttatt
ttacgactagtactaaa Run BLAST on NCBI protein sequence of TCONS_00053750-protein >TCONS_00053750-protein ID=TCONS_00053750-protein|Name=TCONS_00053750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
FSTSRKITKMPIYVVRGSDLSLSIVEADTRKDLFWNLEQAGVTDVMEVTF
KKLTNPLFLSLEPKTNPIAPSVEKPDHLTRLTEQMTSLMNDNTFSDICVL
IDGIRFDCHKCILGKVEYFRCLMSSQMKEVQGNVLVLKDVSAPVFAAVRE
YLYLCKMNWEGQDNIQFWYELIEYCHLICLEDLVKDLEQKIGGHISSQGW
EWEFFADELNLKEIVDGIVLTENIQLTNLNQKMKELLFKEIISCTKSTHN
PSKNRNFIKEIKEFNQEELAEECQERMFLDKNLDLMTNRFDLLLSNMESK
TFHTNLMRLSQEIKESGMMSSFVLSIKLSLVDMEEASPVVMERSCHAIQV
FSELGFPFDREQTRDYMEPGLYRHVIDSFRRSWFNSNAFHLAAIYGNIEL
MEAFIGAGVDPLAKIHHNGETLMHPGGLLGQDGLRGCSAGQGTFFNPHES
QVGSQ Run BLAST on NCBI transcript from alignment at scaffold_233:877621..878987 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053750 ID=TCONS_00053750|Name=TCONS_00053750|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_233:877621..878987 (Clytia hemisphaerica)
tttagtactagtcgtaaaataacaaaaatgcCAATATACGTCGTACGAGG
GTCTGATCTCAGCTTATCCATTGTGGAGGCAGACACGCGAAAAGATTTGT
TTTGGAATTTGGAACAAGCTGGAGTAACTGATGTGATGGAAGtgacattc
aaaaaattaacaaatccACTCTTTTTGAGTCTGGAACCCAAGACCAACCC
CATTGCTCCTTCAGTAGAAAAACCCGATCATTTAACAAGATTGACTGAGC
AAATGACATCTTTGATGAATGATAACACTTTTTCCGATATTTGTGTATTG
ATCGATGGCATAAGATTTGATTGTCACAAGTGCATTTTGGGAAAAGTAGA
ATATTTTCGTTGTTTAATGTCTTCGCAGATGAAGGAGGTGCAAGGCAATG
TGCTCGTTTTAAAAGATGTCAGCGCGCCCGTATTCGCAGCTGTCAGAGAG
TATCTTTACCTTTGTAAAATGAATTGGGAAGGACAAGACAATATACAGTT
TTGGTATGAACTGATAGAATATTGTCATTTGATTTGCCTTGAAGACCTGG
TCAAAGATTTGGAACAAAAGATCGGAGGGCATATTTCTAGCCAAGGCTGG
GAGTGGGAATTTTTTGCTGATGAGCTGAATCTTAAAGAAATTGTCGATGG
TATTGTCTTGActgaaaacattcaactaacAAACTTGaatcaaaaaatga
aagaattacTTTTCAAGGAAATTATCTCATGTACTAAATCTACGCACAAT
CCAAGTAAAAACCGAAATTTTATCAAAGAAATCAAGGAATTCAACCAGGA
AGAGTTAGCAGAAGAATGCCAAGAGAGAATGTTCCtcgataaaaacctcg
atttaATGACAAATCGATTTGATCTTCTCCTTTCTAACATGGAGTCGAAA
ACATTTCATACTAATTTGATGAGACTTTCACAAGAGATCAAAGAAAGTGG
GATGATGTCAAGTTTTGTCCTTTCCATAAAATTGTCTCTTGTTGATATGG
AGGAAGCTTCACCAGTCGTAATGGAGAGAAGTTGTCATGCTATACAAGTC
TTTTCTGAATTAGGTTTCCCTTTTGATAGGGAACAGACAAGGGACTATAT
GGAACCTGGTTTATATCGACATGTAATTGATTCTTTTCGTCGTTCTTGGT
TTAATTCAAACGCTTTTCATTTGGCTGCGATATACGGTAATATTGAATTA
ATGGAAGCCTTTATTGGCGCCGGTGTGGATCCTCTGGCAAAAATCCATCA
CAATGGCGAAACACTCATGCACCCGGGGGGgctactagggcaagatgggc
tacggggatgctccgctggtcagggtaccttttttaacccccacgagtcc
caggtagggtcgcaaaa Coding sequence (CDS) from alignment at scaffold_233:877621..878987 >TCONS_00053750 ID=TCONS_00053750|Name=TCONS_00053750|organism=Clytia hemisphaerica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_233:877621..878987 (Clytia hemisphaerica)
tttagtactagtcgtaaaataacaaaaatgcCAATATACGTCGTACGAGG
GTCTGATCTCAGCTTATCCATTGTGGAGGCAGACACGCGAAAAGATTTGT
TTTGGAATTTGGAACAAGCTGGAGTAACTGATGTGATGGAAGtgacattc
aaaaaattaacaaatccACTCTTTTTGAGTCTGGAACCCAAGACCAACCC
CATTGCTCCTTCAGTAGAAAAACCCGATCATTTAACAAGATTGACTGAGC
AAATGACATCTTTGATGAATGATAACACTTTTTCCGATATTTGTGTATTG
ATCGATGGCATAAGATTTGATTGTCACAAGTGCATTTTGGGAAAAGTAGA
ATATTTTCGTTGTTTAATGTCTTCGCAGATGAAGGAGGTGCAAGGCAATG
TGCTCGTTTTAAAAGATGTCAGCGCGCCCGTATTCGCAGCTGTCAGAGAG
TATCTTTACCTTTGTAAAATGAATTGGGAAGGACAAGACAATATACAGTT
TTGGTATGAACTGATAGAATATTGTCATTTGATTTGCCTTGAAGACCTGG
TCAAAGATTTGGAACAAAAGATCGGAGGGCATATTTCTAGCCAAGGCTGG
GAGTGGGAATTTTTTGCTGATGAGCTGAATCTTAAAGAAATTGTCGATGG
TATTGTCTTGActgaaaacattcaactaacAAACTTGaatcaaaaaatga
aagaattacTTTTCAAGGAAATTATCTCATGTACTAAATCTACGCACAAT
CCAAGTAAAAACCGAAATTTTATCAAAGAAATCAAGGAATTCAACCAGGA
AGAGTTAGCAGAAGAATGCCAAGAGAGAATGTTCCtcgataaaaacctcg
atttaATGACAAATCGATTTGATCTTCTCCTTTCTAACATGGAGTCGAAA
ACATTTCATACTAATTTGATGAGACTTTCACAAGAGATCAAAGAAAGTGG
GATGATGTCAAGTTTTGTCCTTTCCATAAAATTGTCTCTTGTTGATATGG
AGGAAGCTTCACCAGTCGTAATGGAGAGAAGTTGTCATGCTATACAAGTC
TTTTCTGAATTAGGTTTCCCTTTTGATAGGGAACAGACAAGGGACTATAT
GGAACCTGGTTTATATCGACATGTAATTGATTCTTTTCGTCGTTCTTGGT
TTAATTCAAACGCTTTTCATTTGGCTGCGATATACGGTAATATTGAATTA
ATGGAAGCCTTTATTGGCGCCGGTGTGGATCCTCTGGCAAAAATCCATCA
CAATGGCGAAACACTCATGCACCCGGGGGGgctactagggcaagatgggc
tacggggatgctccgctggtcagggtaccttttttaacccccacgagtcc
caggtagggtcgcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053750-exon-scaffold_233-1491911889:877621..878987 | TCONS_00053750-exon-scaffold_233-1491911889:877621..878987 | Clytia hemisphaerica | exon |
| TCONS_00053750-exon-scaffold_233-1510915933:877621..878987 | TCONS_00053750-exon-scaffold_233-1510915933:877621..878987 | Clytia hemisphaerica | exon |
| TCONS_00053750-exon-scaffold_233-1575043694:877621..878987 | TCONS_00053750-exon-scaffold_233-1575043694:877621..878987 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:877621..878987 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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