TCONS_00053747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053747
Unique NameTCONS_00053747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053747 ID=TCONS_00053747|Name=TCONS_00053747|organism=Clytia hemisphaerica|type=transcript|length=1264bp
agaaaaataatttaattgatGTAAATGGTTGTTGCTTACAAATTGAAATA
TGCAATATGTTtctaaaaaatgtgtataaaaattataataaaatgtCCAG
AATGTCTAAAAAGAATTTGAGCTTTATCTAGCACTTCCATCTTTGTTCAA
CAATATTTGCAAGCAGATCACCATAACTCCATCCAATTTTCCTAGCTGCA
ATGGCTGTCAAGCTATCTTGGTTCTGTCGATGGGGTCTACAAGCTCCTGT
GATGTTTGGTTTCATATTTAAATCAAAAAGCCAATACTTGCCATCTTTAT
CCGCTCTGCAGTCGATTCGTATCGGTGCCCTGGCTTCTACCATACTGAAA
GCTTTTTCGCATTCAACATAAGCATTTCGAATTGCTTCTGAGGCAAGCTT
GTCATCTTCCATTACAAAACTATTCTCAGTGACAGGAACATCCCCATTCC
AAGGGATCACACCATTTTTATGGTTGATCCTTTTTACTGCTGGCATAGAC
CATGGTGTGGTTTTGTCTTCCACTTTGTTTCCAAAATAGTATCTTCCAGG
AGGCATAACTGTGACAGTGATTTCCTGCCCTGTTAAATAGTTCTCAATAT
AAAGAGAATTAccatattttttgcttaaaaataaTCGTTCCAGGTTTCCA
CTTAATTCCCCACGGTTTTGAGCCACTACAACTCCTTGACTACCCCGCCC
ACGAACTGGTTTAATAACACATGGAAAATCGAGTCCCTCTAACATGTCTG
ATTTCTGATCATTAGAAATCAAAGTTTGTGGTAAGACAGTCAATCCATTT
TTCCTTAACAGATTGTTAGTTAATAGTTTATcatcatatttttcaattaG
AGCAGGTAACTGACCAACAAACTCAATATCTCTTCCAAAGTAAGCTTCAA
CCGAATGCCCTTTGTAAAGGATTGTATTGagccaaaaacattttgctcCT
TTCTTCAAAGCCATGTCAATCCCTGCAGGGCTGTCAGGAAACACCCAATC
AAAGTCTTGATTTACGACTGGAGATTCAACAGGAGTGATGATAGATACGT
TAAACTTCTGTAGCTGGTAAGCAATATCGGCACCACTATCTGAATAACCA
CCAGGTTTCATTGGTTTTTGAATCCCATTCACCAGTGGTGGAGGCTTGCA
TTGATAGAGAACTGCAACACTCTTCAAATAGATGTTAGAAAGCTTCATTT
TGTTATTGATTGATTTGAATATAATTTAAATCATGTGGTTTCTTTGTGAA
CGAATAGTTTATTC
Run BLAST on NCBI

protein sequence of TCONS_00053747-protein

>TCONS_00053747-protein ID=TCONS_00053747-protein|Name=TCONS_00053747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MKLSNIYLKSVAVLYQCKPPPLVNGIQKPMKPGGYSDSGADIAYQLQKFN
VSIITPVESPVVNQDFDWVFPDSPAGIDMALKKGAKCFWLNTILYKGHSV
EAYFGRDIEFVGQLPALIEKYDDKLLTNNLLRKNGLTVLPQTLISNDQKS
DMLEGLDFPCVIKPVRGRGSQGVVVAQNRGELSGNLERLFLSKKYGNSLY
IENYLTGQEITVTVMPPGRYYFGNKVEDKTTPWSMPAVKRINHKNGVIPW
NGDVPVTENSFVMEDDKLASEAIRNAYVECEKAFSMVEARAPIRIDCRAD
KDGKYWLFDLNMKPNITGACRPHRQNQDSLTAIAARKIGWSYGDLLANIV
EQRWKC
Run BLAST on NCBI

transcript from alignment at scaffold_233:837508..838771

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053747 ID=TCONS_00053747|Name=TCONS_00053747|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_233:837508..838771 (Clytia hemisphaerica)
GAATAAACTATTCGTTCACAAAGAAACCACATGATTTAAATTATATTCAA
ATCAATCAATAACAAAATGAAGCTTTCTAACATCTATTTGAAGAGTGTTG
CAGTTCTCTATCAATGCAAGCCTCCACCACTGGTGAATGGGATTCAAAAA
CCAATGAAACCTGGTGGTTATTCAGATAGTGGTGCCGATATTGCTTACCA
GCTACAGAAGTTTAACGTATCTATCATCACTCCTGTTGAATCTCCAGTCG
TAAATCAAGACTTTGATTGGGTGTTTCCTGACAGCCCTGCAGGGATTGAC
ATGGCTTTGAAGAAAGgagcaaaatgtttttggctCAATACAATCCTTTA
CAAAGGGCATTCGGTTGAAGCTTACTTTGGAAGAGATATTGAGTTTGTTG
GTCAGTTACCTGCTCtaattgaaaaatatgatgATAAACTATTAACTAAC
AATCTGTTAAGGAAAAATGGATTGACTGTCTTACCACAAACTTTGATTTC
TAATGATCAGAAATCAGACATGTTAGAGGGACTCGATTTTCCATGTGTTA
TTAAACCAGTTCGTGGGCGGGGTAGTCAAGGAGTTGTAGTGGCTCAAAAC
CGTGGGGAATTAAGTGGAAACCTGGAACGAttatttttaagcaaaaaata
tggTAATTCTCTTTATATTGAGAACTATTTAACAGGGCAGGAAATCACTG
TCACAGTTATGCCTCCTGGAAGATACTATTTTGGAAACAAAGTGGAAGAC
AAAACCACACCATGGTCTATGCCAGCAGTAAAAAGGATCAACCATAAAAA
TGGTGTGATCCCTTGGAATGGGGATGTTCCTGTCACTGAGAATAGTTTTG
TAATGGAAGATGACAAGCTTGCCTCAGAAGCAATTCGAAATGCTTATGTT
GAATGCGAAAAAGCTTTCAGTATGGTAGAAGCCAGGGCACCGATACGAAT
CGACTGCAGAGCGGATAAAGATGGCAAGTATTGGCTTTTTGATTTAAATA
TGAAACCAAACATCACAGGAGCTTGTAGACCCCATCGACAGAACCAAGAT
AGCTTGACAGCCATTGCAGCTAGGAAAATTGGATGGAGTTATGGTGATCT
GCTTGCAAATATTGTTGAACAAAGATGGAAGTGCTAGATAAAGCTCAAAT
TCTTTTTAGACATTCTGGacattttattataatttttatacacatttttt
agaAACATATTGCATATTTCAATTTGTAAGCAACAACCATTTACatcaat
taaattatttttct

Coding sequence (CDS) from alignment at scaffold_233:837508..838771

>TCONS_00053747 ID=TCONS_00053747|Name=TCONS_00053747|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_233:837508..838771 (Clytia hemisphaerica)
ATGAAGCTTTCTAACATCTATTTGAAGAGTGTTGCAGTTCTCTATCAATG
CAAGCCTCCACCACTGGTGAATGGGATTCAAAAACCAATGAAACCTGGTG
GTTATTCAGATAGTGGTGCCGATATTGCTTACCAGCTACAGAAGTTTAAC
GTATCTATCATCACTCCTGTTGAATCTCCAGTCGTAAATCAAGACTTTGA
TTGGGTGTTTCCTGACAGCCCTGCAGGGATTGACATGGCTTTGAAGAAAG
gagcaaaatgtttttggctCAATACAATCCTTTACAAAGGGCATTCGGTT
GAAGCTTACTTTGGAAGAGATATTGAGTTTGTTGGTCAGTTACCTGCTCt
aattgaaaaatatgatgATAAACTATTAACTAACAATCTGTTAAGGAAAA
ATGGATTGACTGTCTTACCACAAACTTTGATTTCTAATGATCAGAAATCA
GACATGTTAGAGGGACTCGATTTTCCATGTGTTATTAAACCAGTTCGTGG
GCGGGGTAGTCAAGGAGTTGTAGTGGCTCAAAACCGTGGGGAATTAAGTG
GAAACCTGGAACGAttatttttaagcaaaaaatatggTAATTCTCTTTAT
ATTGAGAACTATTTAACAGGGCAGGAAATCACTGTCACAGTTATGCCTCC
TGGAAGATACTATTTTGGAAACAAAGTGGAAGACAAAACCACACCATGGT
CTATGCCAGCAGTAAAAAGGATCAACCATAAAAATGGTGTGATCCCTTGG
AATGGGGATGTTCCTGTCACTGAGAATAGTTTTGTAATGGAAGATGACAA
GCTTGCCTCAGAAGCAATTCGAAATGCTTATGTTGAATGCGAAAAAGCTT
TCAGTATGGTAGAAGCCAGGGCACCGATACGAATCGACTGCAGAGCGGAT
AAAGATGGCAAGTATTGGCTTTTTGATTTAAATATGAAACCAAACATCAC
AGGAGCTTGTAGACCCCATCGACAGAACCAAGATAGCTTGACAGCCATTG
CAGCTAGGAAAATTGGATGGAGTTATGGTGATCTGCTTGCAAATATTGTT
GAACAAAGATGGAAGTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033910XLOC_033910Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053747-proteinTCONS_00053747-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053747-exon-scaffold_233-1491911889:837508..838771TCONS_00053747-exon-scaffold_233-1491911889:837508..838771Clytia hemisphaericaexon
TCONS_00053747-exon-scaffold_233-1510915933:837508..838771TCONS_00053747-exon-scaffold_233-1510915933:837508..838771Clytia hemisphaericaexon
TCONS_00053747-exon-scaffold_233-1575043694:837508..838771TCONS_00053747-exon-scaffold_233-1575043694:837508..838771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:837508..838771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95928	3.77117	1.7134	1.71355	3.40121	2.61601	4.23697	5.90942	3.91062	4.98434	2.93001	2.73234	2.48252	2.60135	3.01704	4.67219	4.08962	4.45048	1.07243	1.60851	1.6582	1.71277	2.89181	3.40027	3.21335	3.54452	2.44388	1.52554	1.71693	1.68693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013815ATP_grasp_subdomain_1
IPR011095Dala_Dala_lig_C
IPR011761ATP-grasp
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0008716D-alanine-D-alanine ligase activity
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008716 D-alanine-D-alanine ligase activity
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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