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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053736 ID=TCONS_00053736|Name=TCONS_00053736|organism=Clytia hemisphaerica|type=transcript|length=1962bp
gcaaaataaataataaaaatttttagattgaatttaaatgaaGCATCCGT
TTTTCTTGGTTCTAAATACAATCATTCTACATTATACTTTTGGATCTTAT
ACTTTCCTATAAACCCCCGTCTTGTAAGTTATTGTATAAGACAAAAGTGC
ACGAAAGAATTTTTATGGCGGGAGACCCGAAACTGGCAAGTTAAAAAGAT
GGCTGACGATAGAGATCCTTCAGTTATCACACCACTCACAACACCATCAA
CTCAACGAGTTTATCGTACTGACAAGGAAAACTTAACACCTCATCAAGAG
ACAGGTATGAAAACCTTTTCACCCTTCGCCAAGCATACACCCAAgagctt
caaaattttatcagatGATGAAATAAGACAGGGAGGAAAGGGATCATCCA
TATCCAAACCTGCCCACCAAATTACCACAAATAAAAGCAAAACTCAAATC
AAGAGAAAAAGTCTTGCTACTCTACAGCAGTCTTCAGAAGGAAAGGGCAA
GTTAACTGGAAATGGGCGTGACACTCTTTCAATAAAGGAAGCATTCAAGA
GAAAACCAGAATCGAAGCATAATTCTTCTAAAGTAGTTGATGTAAAAATC
TCGGAAATCTCAACAATAATCTCAACAAAGATTTCTTCTGTTCCTGAAGA
ACAGATCTTATCGAAAGAAGGTTCCTGTAGCGAGAAGGGAGATGAACTTC
TTGTTAATGAGGCTTTAGATTTGATGAAGCAGACAGAGAACATTGACGAC
AGTTACTGGAAACGAATTGCAGAGGAACGAAGAGAAGCGCTCCAAGAAAC
TCTGACTGAAAATGAGAAACTATATAATCGTATTGATGAACTTgttgaag
aaaacaaaaaacttgAGAGTAAATTAAATGAAGCTGAGTGTTTCAAAATG
CTATACGAAAACTTGTTAGCAAGCAAGGAatgaaaaaattgcaatttatT
AGTGAAATCTAGCTCGctagcaattttttttttacgtaACATTATTTCCT
CCCTTgatttgtatatattttatgaGTATTATTTTTTAGGATTAAAATAA
ATTGTCTAATGgacaataatgaaaaaaatggcCCAATAACATAATTTTGG
TTCTGTGGTGTGTGGCTAAACTTTCTCATTttcagcaaaactttcctatt
GCCACTTTACAATGGAAAAATTCAACAATCTGGATAGGTGTATATATACA
CAAAAGTAGCTTCAATTTGTTTGGCAATCAGTCTCAGGGCTGTTGTGTAT
TACAGTATTATTTAGGCACATGTACTCATCATAAACATAATTTTGCTATG
TTTGAAAAAGTCAGCAGAAAAATCCCTGAAATATGCAAATAATGTTTCCC
TGAGAATCAGTAGTAGCAGCGAACTAAGCCAGGATTTTTCTAGAgtcttt
ttattataagaacaaatggaaaataacttttattcatgatatgcaccatt
gcaatgtcttctgacattgcATCACGGACcaaatagctgattggttgtat
gtgacgtaaaatcagtcaatatgtCACTTTTAACCAATCTGCTGTTGGGT
CTGGTTGGATCCGTGGAAGAAATTgcaatgatgcatatcatgtttagaaa
aagtaacaaaattgttttattactggtccTGACTCGTCAATGACCAACTA
AACtgaataagagcttgtaaaaactccatctcgtccctcTTTAAGATACA
AGCAAGTGTCCATACAATTATGCTATACACATGAAAACCTATTCATTACA
TTTCAACAAAGCATATCAAATGTGAGTGGGTAAACCTTGCCCATTTAAGG
GGACGTGCAATCcctcttttgttttgataatccatcttttttgaaatctt
tacagtatattatttttatcatattttacttttatttgtgAGATTTTATT
CCTAGCAATTTAACTAACTAAATTCAAGATAAAAGGGAATTTTAcacaaa
attcaacaaaat Run BLAST on NCBI protein sequence of TCONS_00053736-protein >TCONS_00053736-protein ID=TCONS_00053736-protein|Name=TCONS_00053736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MADDRDPSVITPLTTPSTQRVYRTDKENLTPHQETGMKTFSPFAKHTPKS
FKILSDDEIRQGGKGSSISKPAHQITTNKSKTQIKRKSLATLQQSSEGKG
KLTGNGRDTLSIKEAFKRKPESKHNSSKVVDVKISEISTIISTKISSVPE
EQILSKEGSCSEKGDELLVNEALDLMKQTENIDDSYWKRIAEERREALQE
TLTENEKLYNRIDELVEENKKLESKLNEAECFKMLYENLLASKE Run BLAST on NCBI transcript from alignment at scaffold_233:644472..646433 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053736 ID=TCONS_00053736|Name=TCONS_00053736|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at scaffold_233:644472..646433 (Clytia hemisphaerica)
attttgttgaattttgtgTAAAATTCCCTTTTATCTTGAATTTAGTTAGT
TAAATTGCTAGGAATAAAATCTcacaaataaaagtaaaatatgataaaaa
taatatactgtaaagatttcaaaaaagatggattatcaaaacaaaagagg
GATTGCACGTCCCCTTAAATGGGCAAGGTTTACCCACTCACATTTGATAT
GCTTTGTTGAAATGTAATGAATAGGTTTTCATGTGTATAGCATAATTGTA
TGGACACTTGCTTGTATCTTAAAgagggacgagatggagtttttacaagc
tcttattcaGTTTAGTTGGTCATTGACGAGTCAggaccagtaataaaaca
attttgttactttttctaaacatgatatgcatcattgcAATTTCTTCCAC
GGATCCAACCAGACCCAACAGCAGATTGGTTAAAAGTGacatattgactg
attttacgtcacatacaaccaatcagctatttgGTCCGTGATgcaatgtc
agaagacattgcaatggtgcatatcatgaataaaagttattttccatttg
ttcttataataaaaagacTCTAGAAAAATCCTGGCTTAGTTCGCTGCTAC
TACTGATTCTCAGGGAAACATTATTTGCATATTTCAGGGATTTTTCTGCT
GACTTTTTCAAACATAGCAAAATTATGTTTATGATGAGTACATGTGCCTA
AATAATACTGTAATACACAACAGCCCTGAGACTGATTGCCAAACAAATTG
AAGCTACTTTTGTGTATATATACACCTATCCAGATTGTTGAATTTTTCCA
TTGTAAAGTGGCaataggaaagttttgctgaaAATGAGAAAGTTTAGCCA
CACACCACAGAACCAAAATTATGTTATTGGgccatttttttcattattgt
cCATTAGACAATTTATTTTAATCCTAAAAAATAATACtcataaaatatat
acaaatcAAGGGAGGAAATAATGTtacgtaaaaaaaaaattgctagCGAG
CTAGATTTCACTAataaattgcaattttttcatTCCTTGCTTGCTAACAA
GTTTTCGTATAGCATTTTGAAACACTCAGCTTCATTTAATTTACTCTcaa
gttttttgttttcttcaacAAGTTCATCAATACGATTATATAGTTTCTCA
TTTTCAGTCAGAGTTTCTTGGAGCGCTTCTCTTCGTTCCTCTGCAATTCG
TTTCCAGTAACTGTCGTCAATGTTCTCTGTCTGCTTCATCAAATCTAAAG
CCTCATTAACAAGAAGTTCATCTCCCTTCTCGCTACAGGAACCTTCTTTC
GATAAGATCTGTTCTTCAGGAACAGAAGAAATCTTTGTTGAGATTATTGT
TGAGATTTCCGAGATTTTTACATCAACTACTTTAGAAGAATTATGCTTCG
ATTCTGGTTTTCTCTTGAATGCTTCCTTTATTGAAAGAGTGTCACGCCCA
TTTCCAGTTAACTTGCCCTTTCCTTCTGAAGACTGCTGTAGAGTAGCAAG
ACTTTTTCTCTTGATTTGAGTTTTGCTTTTATTTGTGGTAATTTGGTGGG
CAGGTTTGGATATGGATGATCCCTTTCCTCCCTGTCTTATTTCATCatct
gataaaattttgaagctcTTGGGTGTATGCTTGGCGAAGGGTGAAAAGGT
TTTCATACCTGTCTCTTGATGAGGTGTTAAGTTTTCCTTGTCAGTACGAT
AAACTCGTTGAGTTGATGGTGTTGTGAGTGGTGTGATAACTGAAGGATCT
CTATCGTCAGCCATCTTTTTAACTTGCCAGTTTCGGGTCTCCCGCCATAA
AAATTCTTTCGTGCACTTTTGTCTTATACAATAACTTACAAGACGGGGGT
TTATAGGAAAGTATAAGATCCAAAAGTATAATGTAGAATGATTGTATTTA
GAACCAAGAAAAACGGATGCttcatttaaattcaatctaaaaatttttat
tatttattttgc Coding sequence (CDS) from alignment at scaffold_233:644472..646433 >TCONS_00053736 ID=TCONS_00053736|Name=TCONS_00053736|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_233:644472..646433 (Clytia hemisphaerica)
tcatTCCTTGCTTGCTAACAAGTTTTCGTATAGCATTTTGAAACACTCAG
CTTCATTTAATTTACTCTcaagttttttgttttcttcaacAAGTTCATCA
ATACGATTATATAGTTTCTCATTTTCAGTCAGAGTTTCTTGGAGCGCTTC
TCTTCGTTCCTCTGCAATTCGTTTCCAGTAACTGTCGTCAATGTTCTCTG
TCTGCTTCATCAAATCTAAAGCCTCATTAACAAGAAGTTCATCTCCCTTC
TCGCTACAGGAACCTTCTTTCGATAAGATCTGTTCTTCAGGAACAGAAGA
AATCTTTGTTGAGATTATTGTTGAGATTTCCGAGATTTTTACATCAACTA
CTTTAGAAGAATTATGCTTCGATTCTGGTTTTCTCTTGAATGCTTCCTTT
ATTGAAAGAGTGTCACGCCCATTTCCAGTTAACTTGCCCTTTCCTTCTGA
AGACTGCTGTAGAGTAGCAAGACTTTTTCTCTTGATTTGAGTTTTGCTTT
TATTTGTGGTAATTTGGTGGGCAGGTTTGGATATGGATGATCCCTTTCCT
CCCTGTCTTATTTCATCatctgataaaattttgaagctcTTGGGTGTATG
CTTGGCGAAGGGTGAAAAGGTTTTCATACCTGTCTCTTGATGAGGTGTTA
AGTTTTCCTTGTCAGTACGATAAACTCGTTGAGTTGATGGTGTTGTGAGT
GGTGTGATAACTGAAGGATCTCTATCGTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053736-exon-scaffold_233-1491911889:644472..646433 | TCONS_00053736-exon-scaffold_233-1491911889:644472..646433 | Clytia hemisphaerica | exon |
| TCONS_00053736-exon-scaffold_233-1510915933:644472..646433 | TCONS_00053736-exon-scaffold_233-1510915933:644472..646433 | Clytia hemisphaerica | exon |
| TCONS_00053736-exon-scaffold_233-1575043694:644472..646433 | TCONS_00053736-exon-scaffold_233-1575043694:644472..646433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:644472..646433 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022786 | Geminin/Multicilin |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006275 | regulation of DNA replication |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006275 |
regulation of DNA replication |
Blast
The following BLAST results are available for this feature:
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