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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053726 ID=TCONS_00053726|Name=TCONS_00053726|organism=Clytia hemisphaerica|type=transcript|length=1448bp
CGCCCTGAGGCCGGAGAGGAAAATACAGAGACGATGCATCTCttaaatcc
aattttcagaagtAGCACATTCAAAATATTGGTCATCATTTTTTGTGTGT
TTACAGTCTACAATCTGTTAAATAGAGGTGGTCTTTTAGTTGAAGAAAGC
GACGTCAataatgaagaccagatggaaaACGTTATTGAACTTTATCTTAA
GAAAAGACTGTCTGCTAGGTTAAGCGATGTTGATGCTTCCAAATCAAAAG
ATTTGATGCAGGCTTTGAAAAACGTTATCAAGGGTCATTTAAATGACGAT
TCTGATGGTAACCAAGGACGCCATTTTGATAACCACGACGGTAACCATGG
CAACAAAAATCACTTGGAGATGGACgatcttttgaaaaatgtcttTGATT
CTTCAGATTCAAAGAGAAAGGAGAGCGaacagaaaaaaatcgaatttcga
aCATCAGATTCTAAGAATGGAAACCATATTTCCACCAAAGACGCTGGTAG
TACAGAAAAATCGAGAAGTAGTCTCCCTAATAACAATAAGTCGGCTAAAG
ATCCTGTTTCTACTGAGACCGAATCCAATCTAAACACACCTTCAAATAAA
CCCAAAAAAACTACCACGGAACCGCCCTCAACTGCCTCATTAAGCACCGC
CCAGATGTCAACTCAAAAGGGCGTTAAAAATGGCGGTGTATCTTTTCAAC
TGAGAAgtgatttcaaaaataaagaagaccTCTTGAAATATATGAAAGAA
ACGCAACAAAAGGCGAAAGATTTTGTGAAACCCGTCTACGCTAAATTGAA
TAATCTTTGGAACTATGATGGCGGCCAGAAAGATTATTATGGGCGTATTA
TCCTCCCTGAACCTCATGCTGGTTTGAATGAGTGTTACGACTGGTCGTAT
AATTGGGCCGACTACACGTTGATTTATAAGCCGAcgaaaaaattccagaa
aaacCCGTGCTCATATCCAAAGAATGAAATCGTTAAGAAAGTCATTATGC
CGAATAAAACTGTCGTTTGGCAAGGGTGTACTAAAGATAAACTTTGTTCA
CTGTTGCCTTATTATAATACGGAACGGAAGGAACGACGTAATATTCCGCC
GTGTTGCCGTCAAAAATTACTTGAAATGTTACGACATATTGACGTCGAGC
TTGTGAAACGTAACATTACGTATACGTTATCGGATGGTTCCGTTATTGGA
TGGTACCGTAATCAAAAGTTAGTTCCGTATGACAGTGATATTGATATGTA
CGTAGACGGACGTATTTACCGTAACCAGGTTTGGGACGAGATTTTTGGGA
ATCTTACGTTGAAATACGGTTACGTGTATAACCAAACGGAAGACTTTAAA
GCTAGATTGAGATATTCAAAGAGCAACCCATTACAACTTGATATTTGGCC
CTATTTCAATATAAAGCTGCGTCAACATTACGGAGAGGTTGTTCCCGG Run BLAST on NCBI protein sequence of TCONS_00053726-protein >TCONS_00053726-protein ID=TCONS_00053726-protein|Name=TCONS_00053726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
RPEAGEENTETMHLLNPIFRSSTFKILVIIFCVFTVYNLLNRGGLLVEES
DVNNEDQMENVIELYLKKRLSARLSDVDASKSKDLMQALKNVIKGHLNDD
SDGNQGRHFDNHDGNHGNKNHLEMDDLLKNVFDSSDSKRKESEQKKIEFR
TSDSKNGNHISTKDAGSTEKSRSSLPNNNKSAKDPVSTETESNLNTPSNK
PKKTTTEPPSTASLSTAQMSTQKGVKNGGVSFQLRSDFKNKEDLLKYMKE
TQQKAKDFVKPVYAKLNNLWNYDGGQKDYYGRIILPEPHAGLNECYDWSY
NWADYTLIYKPTKKFQKNPCSYPKNEIVKKVIMPNKTVVWQGCTKDKLCS
LLPYYNTERKERRNIPPCCRQKLLEMLRHIDVELVKRNITYTLSDGSVIG
WYRNQKLVPYDSDIDMYVDGRIYRNQVWDEIFGNLTLKYGYVYNQTEDFK
ARLRYSKSNPLQLDIWPYFNIKLRQHYGEVVP Run BLAST on NCBI transcript from alignment at scaffold_233:369681..371128 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053726 ID=TCONS_00053726|Name=TCONS_00053726|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at scaffold_233:369681..371128 (Clytia hemisphaerica)
CCGGGAACAACCTCTCCGTAATGTTGACGCAGCTTTATATTGAAATAGGG
CCAAATATCAAGTTGTAATGGGTTGCTCTTTGAATATCTCAATCTAGCTT
TAAAGTCTTCCGTTTGGTTATACACGTAACCGTATTTCAACGTAAGATTC
CCAAAAATCTCGTCCCAAACCTGGTTACGGTAAATACGTCCGTCTACGTA
CATATCAATATCACTGTCATACGGAACTAACTTTTGATTACGGTACCATC
CAATAACGGAACCATCCGATAACGTATACGTAATGTTACGTTTCACAAGC
TCGACGTCAATATGTCGTAACATTTCAAGTAATTTTTGACGGCAACACGG
CGGAATATTACGTCGTTCCTTCCGTTCCGTATTATAATAAGGCAACAGTG
AACAAAGTTTATCTTTAGTACACCCTTGCCAAACGACAGTTTTATTCGGC
ATAATGACTTTCTTAACGATTTCATTCTTTGGATATGAGCACGGgttttt
ctggaattttttcgTCGGCTTATAAATCAACGTGTAGTCGGCCCAATTAT
ACGACCAGTCGTAACACTCATTCAAACCAGCATGAGGTTCAGGGAGGATA
ATACGCCCATAATAATCTTTCTGGCCGCCATCATAGTTCCAAAGATTATT
CAATTTAGCGTAGACGGGTTTCACAAAATCTTTCGCCTTTTGTTGCGTTT
CTTTCATATATTTCAAGAggtcttctttatttttgaaatcacTTCTCAGT
TGAAAAGATACACCGCCATTTTTAACGCCCTTTTGAGTTGACATCTGGGC
GGTGCTTAATGAGGCAGTTGAGGGCGGTTCCGTGGTAGTTTTTTTGGGTT
TATTTGAAGGTGTGTTTAGATTGGATTCGGTCTCAGTAGAAACAGGATCT
TTAGCCGACTTATTGTTATTAGGGAGACTACTTCTCGATTTTTCTGTACT
ACCAGCGTCTTTGGTGGAAATATGGTTTCCATTCTTAGAATCTGATGttc
gaaattcgatttttttctgttCGCTCTCCTTTCTCTTTGAATCTGAAGAA
TCAaagacatttttcaaaagatcGTCCATCTCCAAGTGATTTTTGTTGCC
ATGGTTACCGTCGTGGTTATCAAAATGGCGTCCTTGGTTACCATCAGAAT
CGTCATTTAAATGACCCTTGATAACGTTTTTCAAAGCCTGCATCAAATCT
TTTGATTTGGAAGCATCAACATCGCTTAACCTAGCAGACAGTCTTTTCTT
AAGATAAAGTTCAATAACGTtttccatctggtcttcattatTGACGTCGC
TTTCTTCAACTAAAAGACCACCTCTATTTAACAGATTGTAGACTGTAAAC
ACACAAAAAATGATGACCAATATTTTGAATGTGCTacttctgaaaattgg
atttaaGAGATGCATCGTCTCTGTATTTTCCTCTCCGGCCTCAGGGCG Coding sequence (CDS) from alignment at scaffold_233:369681..371128 >TCONS_00053726 ID=TCONS_00053726|Name=TCONS_00053726|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_233:369681..371128 (Clytia hemisphaerica)
GGGAACAACCTCTCCGTAATGTTGACGCAGCTTTATATTGAAATAGGGCC
AAATATCAAGTTGTAATGGGTTGCTCTTTGAATATCTCAATCTAGCTTTA
AAGTCTTCCGTTTGGTTATACACGTAACCGTATTTCAACGTAAGATTCCC
AAAAATCTCGTCCCAAACCTGGTTACGGTAAATACGTCCGTCTACGTACA
TATCAATATCACTGTCATACGGAACTAACTTTTGATTACGGTACCATCCA
ATAACGGAACCATCCGATAACGTATACGTAATGTTACGTTTCACAAGCTC
GACGTCAATATGTCGTAACATTTCAAGTAATTTTTGACGGCAACACGGCG
GAATATTACGTCGTTCCTTCCGTTCCGTATTATAATAAGGCAACAGTGAA
CAAAGTTTATCTTTAGTACACCCTTGCCAAACGACAGTTTTATTCGGCAT
AATGACTTTCTTAACGATTTCATTCTTTGGATATGAGCACGGgtttttct
ggaattttttcgTCGGCTTATAAATCAACGTGTAGTCGGCCCAATTATAC
GACCAGTCGTAACACTCATTCAAACCAGCATGAGGTTCAGGGAGGATAAT
ACGCCCATAATAATCTTTCTGGCCGCCATCATAGTTCCAAAGATTATTCA
ATTTAGCGTAGACGGGTTTCACAAAATCTTTCGCCTTTTGTTGCGTTTCT
TTCATATATTTCAAGAggtcttctttatttttgaaatcacTTCTCAGTTG
AAAAGATACACCGCCATTTTTAACGCCCTTTTGAGTTGACATCTGGGCGG
TGCTTAATGAGGCAGTTGAGGGCGGTTCCGTGGTAGTTTTTTTGGGTTTA
TTTGAAGGTGTGTTTAGATTGGATTCGGTCTCAGTAGAAACAGGATCTTT
AGCCGACTTATTGTTATTAGGGAGACTACTTCTCGATTTTTCTGTACTAC
CAGCGTCTTTGGTGGAAATATGGTTTCCATTCTTAGAATCTGATGttcga
aattcgatttttttctgttCGCTCTCCTTTCTCTTTGAATCTGAAGAATC
AaagacatttttcaaaagatcGTCCATCTCCAAGTGATTTTTGTTGCCAT
GGTTACCGTCGTGGTTATCAAAATGGCGTCCTTGGTTACCATCAGAATCG
TCATTTAAATGACCCTTGATAACGTTTTTCAAAGCCTGCATCAAATCTTT
TGATTTGGAAGCATCAACATCGCTTAACCTAGCAGACAGTCTTTTCTTAA
GATAAAGTTCAATAACGTtttccatctggtcttcattatTGACGTCGCTT
TCTTCAACTAAAAGACCACCTCTATTTAACAGATTGTAGACTGTAAACAC
ACAAAAAATGATGACCAATATTTTGAATGTGCTacttctgaaaattggat
ttaaGAGATGCATCGTCTCTGTATTTTCCTCTCCGGCCTCAGGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053726-exon-scaffold_233-1491911889:369681..371128 | TCONS_00053726-exon-scaffold_233-1491911889:369681..371128 | Clytia hemisphaerica | exon |
| TCONS_00053726-exon-scaffold_233-1510915933:369681..371128 | TCONS_00053726-exon-scaffold_233-1510915933:369681..371128 | Clytia hemisphaerica | exon |
| TCONS_00053726-exon-scaffold_233-1575043694:369681..371128 | TCONS_00053726-exon-scaffold_233-1575043694:369681..371128 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:369681..371128 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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