TCONS_00053722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053722
Unique NameTCONS_00053722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053722 ID=TCONS_00053722|Name=TCONS_00053722|organism=Clytia hemisphaerica|type=transcript|length=535bp
CTTTGGACTTCAAATCTTTCTCCAGAAGTTTGAGTTGCTTTGATAAATAT
TCTTCATCATTGATATCTCCAGATATATCGATGTATAAATTAGGTGCCAA
AGAAAGGGCAATATTTCCTTTCCACTGGCGAGGATTTTTCATTGAGGGGT
CAAGGACTATGGCTACCATTGGAATCCGTGTGCTGGCAAAGGCAAATTCT
GTGCGACAATTATCTGTATCATGACCGGAAACCACTTTATTGTGATATCG
CTTTGTAATAAAAGCAATAAAACATTTGGTGTTTTCGATCCCGTTAGCCA
TTTGTTCTCTTATGTTACCGACCATTCGTTCATTGTCGAACCAAGTCACA
TAACCCATCTTCTTGATCGCCTCGTTAATTTTCGTGACTTTTTCATGGTT
TGTTCCATCTTCACCCCAATCGTGTGATAAGAACAAATCAGTTTTTCGGT
CAGATGCAACAGCCATATCCCTCAGTTCAGTTCCTGAATTTGATGAGACA
ACTATAAACTATAAAGTATTCTCTCATCTAATGAT
Run BLAST on NCBI

protein sequence of TCONS_00053722-protein

>TCONS_00053722-protein ID=TCONS_00053722-protein|Name=TCONS_00053722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MAVASDRKTDLFLSHDWGEDGTNHEKVTKINEAIKKMGYVTWFDNERMVG
NIREQMANGIENTKCFIAFITKRYHNKVVSGHDTDNCRTEFAFASTRIPM
VAIVLDPSMKNPRQWKGNIALSLAPNLYIDISGDINDEEYLSKQLKLLEK
DLKSK
Run BLAST on NCBI

transcript from alignment at scaffold_233:290125..290659

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053722 ID=TCONS_00053722|Name=TCONS_00053722|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_233:290125..290659 (Clytia hemisphaerica)
ATCATTAGATGAGAGAATACTTTATAGTTTATAGTTGTCTCATCAAATTC
AGGAACTGAACTGAGGGATATGGCTGTTGCATCTGACCGAAAAACTGATT
TGTTCTTATCACACGATTGGGGTGAAGATGGAACAAACCATGAAAAAGTC
ACGAAAATTAACGAGGCGATCAAGAAGATGGGTTATGTGACTTGGTTCGA
CAATGAACGAATGGTCGGTAACATAAGAGAACAAATGGCTAACGGGATCG
AAAACACCAAATGTTTTATTGCTTTTATTACAAAGCGATATCACAATAAA
GTGGTTTCCGGTCATGATACAGATAATTGTCGCACAGAATTTGCCTTTGC
CAGCACACGGATTCCAATGGTAGCCATAGTCCTTGACCCCTCAATGAAAA
ATCCTCGCCAGTGGAAAGGAAATATTGCCCTTTCTTTGGCACCTAATTTA
TACATCGATATATCTGGAGATATCAATGATGAAGAATATTTATCAAAGCA
ACTCAAACTTCTGGAGAAAGATTTGAAGTCCAAAG

Coding sequence (CDS) from alignment at scaffold_233:290125..290659

>TCONS_00053722 ID=TCONS_00053722|Name=TCONS_00053722|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_233:290125..290659 (Clytia hemisphaerica)
ATGGCTGTTGCATCTGACCGAAAAACTGATTTGTTCTTATCACACGATTG
GGGTGAAGATGGAACAAACCATGAAAAAGTCACGAAAATTAACGAGGCGA
TCAAGAAGATGGGTTATGTGACTTGGTTCGACAATGAACGAATGGTCGGT
AACATAAGAGAACAAATGGCTAACGGGATCGAAAACACCAAATGTTTTAT
TGCTTTTATTACAAAGCGATATCACAATAAAGTGGTTTCCGGTCATGATA
CAGATAATTGTCGCACAGAATTTGCCTTTGCCAGCACACGGATTCCAATG
GTAGCCATAGTCCTTGACCCCTCAATGAAAAATCCTCGCCAGTGGAAAGG
AAATATTGCCCTTTCTTTGGCACCTAATTTATACATCGATATATCTGGAG
ATATCAATGATGAAGAATATTTATCAAAGCAACTCAAACTTCTGGAGAAA
GATTTGAAGTCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033885XLOC_033885Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053722-proteinTCONS_00053722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053722-exon-scaffold_233-1491911889:290125..290659TCONS_00053722-exon-scaffold_233-1491911889:290125..290659Clytia hemisphaericaexon
TCONS_00053722-exon-scaffold_233-1510915933:290125..290659TCONS_00053722-exon-scaffold_233-1510915933:290125..290659Clytia hemisphaericaexon
TCONS_00053722-exon-scaffold_233-1575043694:290125..290659TCONS_00053722-exon-scaffold_233-1575043694:290125..290659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:290125..290659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.12322	0	0.14676	0.463886	0	0.39296	0.183414	0.227187	0	0.144957	3.03986	3.45759	0.123592	0	0	0	10.5274	9.80562	0	0.153969	0.249559	0.226885	0.116843	0.10428	0	0	0.12079	0.123066
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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