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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053700 ID=TCONS_00053700|Name=TCONS_00053700|organism=Clytia hemisphaerica|type=transcript|length=2862bpRun BLAST on NCBI protein sequence of TCONS_00053700-protein >TCONS_00053700-protein ID=TCONS_00053700-protein|Name=TCONS_00053700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=811bp MDSDSKLTVDALSSTNKTNDMDDDSTLLTTNITTTIGQSTNGLSNITELERun BLAST on NCBI transcript from alignment at scaffold_233:1172986..1206962- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053700 ID=TCONS_00053700|Name=TCONS_00053700|organism=Clytia hemisphaerica|type=transcript|length=33977bp|location=Sequence derived from alignment at scaffold_233:1172986..1206962- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:1172986..1206962- >TCONS_00053700 ID=TCONS_00053700|Name=TCONS_00053700|organism=Clytia hemisphaerica|type=CDS|length=34104bp|location=Sequence derived from alignment at scaffold_233:1172986..1206962- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053700 vs. Swiss-Prot (Human)
Match: PIBF1 (Progesterone-induced-blocking factor 1 OS=Homo sapiens GN=PIBF1 PE=1 SV=2) HSP 1 Score: 432.18 bits (1110), Expect = 7.009e-137 Identity = 288/752 (38.30%), Postives = 466/752 (61.97%), Query Frame = 3
Query: 279 TNISGTLTDTATGLLSSL---NLSESDMERSR-NVTKDLLFRKQLLHDIQKLKIELSQKNLMIDTLKAEHLNQLDDLEEKLADAIHGRQLMQAKYETQSRSTKSELDKHVQSLKKDLQEAMKSQKYYQRKYEDEMNNQQELNTFREGYIPRVLDEDAYLELKSECENTLSIKNLFDVKLYEATRPLRVEVDSLQQRLDLFTSDFHDKXXXXXXXXXXXXXXXXXXXXXXXXCQRYQVQLEQLRGQVDQKSYKHQNYDLVQSERDALERQIVDLERACTVYKAELEGRMEQNEIIRNQVLEQNQTVALLKQDKEYLSKQLNELEPRHKMVEEKLHHTMQQLDETKQARESLYEKYLNSRERYKQEYEERMKREIDELSNKTNTELDRIKENMKAMYERENRGLVEARNTALLEQERLLNNEKNNQIKYNELLGEFRQLQISSDSKVSDVHNDFKMKAFEHDRVQLLYEESLNNNKALMQQNDALSQKIEAVNKGYYDLKTSSQKSVTELTSKNEDLKNKLTIYEKLEQELDDVVMQAAEMTDEGDSERVLFAYGYGANVPSTAKRRMQQSVQLARRVLHLERTNTSLRHEVERESKKSKQVSXXXXXXXXXXXXXQQPYNYLIESIRTRDEQNKTLKNTIETLEGDMRTCKKENQALKTSNDQISADLERLLNQREEXXXXXXXXXXXXSSGRESLTDHSLSNIAKTSSTVYGPHVSKRTTSQNENNREGTAPKPIVFEKSVPPSWYTRLKSK 2522
NIS +L L +++ ++S S+ + +T+ L+ RK+LLH+IQ LKIELSQK +MID LK ++L ++++LEEKL DA+H +QL+ + + Q + + K+ + +K++++ + QK + E + +++ R L E+ Y++LK+ E+ LSI V+ YE PLR E+ LQ + ++ + + +L+ EE+R +E+ +RCQR ++L + + Q Y+ +NYD V+SERDALE+++++L R + +A + ++ + +V+ QTV LL++DKEYL++Q EL R E++L QL+E+K+ARE +YEKY+ SR+ YK EYE ++ E++++ KTN E+D+++ + MYERENR L EAR+ A+ E+ER + EK+ K+++LL +R+LQ+S++SKV++ + K+K+FE +RVQLL EE+ N + + +K+E + K +Y L+ SS+K +TEL ++N + + +L IYEKLE+ELD+++MQ AE+ +E ++ERVLF+YGYGANVP+TAKRR++QSV LARRVL LE+ N+ + ++E + Q+S+EL AN+LLN+ QQPY YLIES+R RD + +L +I LE D+ KE AL + +Q++ DLE+LLN REEL +KQ+++ + S +++SL V SK E+ PKP +F K P W + K K
Sbjct: 12 VNISSSLESEDISLETTVPTDDISSSEEREGKVRITRQLIERKELLHNIQLLKIELSQKTMMIDNLKVDYLTKIEELEEKLNDALHQKQLLTLRLDNQLAFQQKDASKYQELMKQEMETILLRQKQLE---ETNLQLREKAGDVRRNLRDFELTEEQYIKLKAFPEDQLSIPEYVSVRFYELVNPLRKEICELQVKKNILAEELSTNKNQLKQLTETYEEDRKNYSEVQIRCQRLALELADTKQLIQQGDYRQENYDKVKSERDALEQEVIELRRKHEILEASHMIQTKERSELSKEVVTLEQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQAQLEESKKAREEMYEKYVASRDHYKTEYENKLHDELEQIRLKTNQEIDQLRNASREMYERENRNLREARDNAVAEKERAVMAEKDALEKHDQLLDRYRELQLSTESKVTEFLHQSKLKSFESERVQLLQEETARNLTQCQLECEKYQKKLEVLTKEFYSLQASSEKRITELQAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERVLFSYGYGANVPTTAKRRLKQSVHLARRVLQLEKQNSLILKDLEHRKDQVTQLSQELDRANSLLNQTQQPYRYLIESVRQRDSKIDSLTESIAQLEKDVSNLNKEKSALLQTKNQMALDLEQLLNHREELAAMKQILVKMHSKH----SENSLLLTKTEPKHVTENQKSKTLNVPKEHEDNIFTPKPTLFTKKEAPEWSKKQKMK 756 The following BLAST results are available for this feature:
BLAST of TCONS_00053700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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