TCONS_00053695 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053695
Unique Name	TCONS_00053695
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2430

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_233:1083055..1085484-

transcript sequence

>TCONS_00053695 ID=TCONS_00053695|Name=TCONS_00053695|organism=Clytia hemisphaerica|type=transcript|length=2430bp
TGTAATGAATCTTTACCCTAAAAAAAGACCATCAGTAAACCAGTGAAAAC
GTTTTGTTTGATAAACATCTAGATCATTATTTTAAGTTTGTCCAGTAAGT
GTGGTTTAGACATAAAAGAATAGACGGATTTATCTTTATTAATTGTCAAG
ATAAAAGGATTTTGTTGACTTAAAGTATTTATGAAATCTACACGTATACA
GTTTAATATTAAGAAATCTTTTTATGGGAGAATTTCATGTCATTTCTGAT
TTATGGTTTATTGAAATTCGTTTACTTTAGAATTTGAATTTTAGATGAGC
TCATTTTGTCTtgcttttggaaaatatttcaaaaaaacggATCAGTTCTT
TATCATGAAATCTTATTTAAAAGGAGATGAACCCAGATTTAATAAAGGTT
GATTTACCTTGTAATGGCTACTGCTGGTTCTAATGATGCTGACTTTACTC
AATGTTCTTTCCTTCAAAACAATATTGCCAATGTACCAGTGAAAAAGTCT
TATGAGAATTGGAAGGATGAGCGTGTTCAGTATGGAATGTGCAGCCTTAA
CTCTACTGGAAGAATCAAAGTACACTATGTTACTGGAAAAAAGATTTACC
TTCGTGAATTTAGGCTCCTTTACCTTCATCATTTGGCTATAAGGAAATTG
CTGTATGATCCCTTTACAATGCGATGATTTGTTATTGCAAGTTGCCCAAT
GTATTTGACGAACCCACAACTATATTTGTACAAGAAAGTGATAAATTGCA
TTTGATGTTGCCAGACATTAATAACATGAATGTTTACATTAAGCACACTG
AAAATCATGGTAAATTTCTTGTCATATCATCTCTTGTGAGGGTTGATTCA
GACATTGACAGTGATTGGAGCAGCTCTGATAGTGATTCAGAACTCGAAAG
TTTGATATTGGATTTAATCCAATACAacataaagaaatttcaaactaCAG
TCAAATTGCTGTGAGCAAGGATCTCCACGATTTTACtagaaaatttttct
tgatttctatATAAGGTGTGTTTACTTGCTTAAAAACCATCCTGAAAATA
TGGGTGTATTTAAGTTTTTGGGCGAGCCTTTTTTTACATGCCCTATCAAT
AATACAGATTCAAGTGTTCACTATGTATTACAATTACACCATTCAATTTT
TGTTGCAATTTATATGAACAAAACCGTCAAAGTCTTCAATGCCACATCAG
ATGGaaacattgttttaaaaagattcaGACCTCCGGAATCCTTTGATTGG
ATTGTCACAGTACCATTCAGCTTATCGAAACATTTAAAAAAGTATCATCT
TGTTGCCAAAGAAAACCTGACCAATAAATTCACGTTGATTGATCTAAAAA
CAGGCGATATAGTGCTCAGTTATCAGTCAACTACAGAAAACCATGGTACA
CTTTATCTTAACTGGAATATGCATGAAGCAGCATTAGTATGCTGAGTTTT
TAGAGGTCAAAACCATTGGATTTCATGATATCAGTTTGAAACACTTTGCA
AGGTTAACTTGTCTCCAGTCATTCAGTAAAGATCATTTGAATACTCAACT
TTCAATGTCAATACAAGACTATCTAAGGAATTAAGGAATTAAaggaattt
tatattttatttttaaggaaTTAAAAGAATTACCTCCAGTGGAATCTCCA
GGTGAAGTGAGGCATTTCCACCACAGGCTTTTGAATATCAAGGAGATGCT
GCAACAGACCTTGAAAATGAGAGTGAACTACACCACCAGATTTGTTTGAA
TATAAAGATGAAACTACACCAGAATTAGTTGAACCAGAGGAAGCTGAACC
AGAACCACCAGAAGCTATTGATATCTAGAACAAACAGTGTAGTCACAAAC
AACATCGAATCTGCAGAAAAAGTAATTCCTTTGCAATCAAGTTGAGGACA
CGAAATGCAATCAGTTGCAACTTTTTTGTCCGTAGACAGTAatgaagaat
ttgaaaaaacttgTCAATGAAGTGCTCAAGTGCTCTGTAGACTTGACAAA
ATTCTGACCAATTGAGTTATAAGATTATGTATAAAGGATGATATTATCAA
ATTTGCTAAATTTTATTCtcagaaaatcttatttttttccaatcCACCAT
TATTGTTTTGCTTGATATATTtcaacagatatctgtttcccaatttatta
tgtcatctcctagaaatattgatctgtttctctctgatgacgtcatcagc
tggagtgGGGAAACAGATAGCTTTAAGGAAAAGGTCTTTCCTAGAAAGTC
GGATCTGTTTCCCCATTTTTCAAAAAACGCTCTCTCCTGAAAAAGGCAAA
CAGATATATTTCGGGGAAATGGGCTCGTTGGCTGCTTCTGAACCCTTCTG
AGATCTTTTTCTCGCTTCGCTCGcattaaatacgccgtccagttttcgac
tatttgagaaaatgtcatgctaaagaggag

Run BLAST on NCBI

transcript from alignment at scaffold_233:1083055..1085484-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053695 ID=TCONS_00053695|Name=TCONS_00053695|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at scaffold_233:1083055..1085484- (Clytia hemisphaerica)
TGTAATGAATCTTTACCCTAAAAAAAGACCATCAGTAAACCAGTGAAAAC
GTTTTGTTTGATAAACATCTAGATCATTATTTTAAGTTTGTCCAGTAAGT
GTGGTTTAGACATAAAAGAATAGACGGATTTATCTTTATTAATTGTCAAG
ATAAAAGGATTTTGTTGACTTAAAGTATTTATGAAATCTACACGTATACA
GTTTAATATTAAGAAATCTTTTTATGGGAGAATTTCATGTCATTTCTGAT
TTATGGTTTATTGAAATTCGTTTACTTTAGAATTTGAATTTTAGATGAGC
TCATTTTGTCTTGCTTTTGGAAAATATTTCAAAAAAACGGATCAGTTCTT
TATCATGAAATCTTATTTAAAAGGAGATGAACCCAGATTTAATAAAGGTT
GATTTACCTTGTAATGGCTACTGCTGGTTCTAATGATGCTGACTTTACTC
AATGTTCTTTCCTTCAAAACAATATTGCCAATGTACCAGTGAAAAAGTCT
TATGAGAATTGGAAGGATGAGCGTGTTCAGTATGGAATGTGCAGCCTTAA
CTCTACTGGAAGAATCAAAGTACACTATGTTACTGGAAAAAAGATTTACC
TTCGTGAATTTAGGCTCCTTTACCTTCATCATTTGGCTATAAGGAAATTG
CTGTATGATCCCTTTACAATGCGATGATTTGTTATTGCAAGTTGCCCAAT
GTATTTGACGAACCCACAACTATATTTGTACAAGAAAGTGATAAATTGCA
TTTGATGTTGCCAGACATTAATAACATGAATGTTTACATTAAGCACACTG
AAAATCATGGTAAATTTCTTGTCATATCATCTCTTGTGAGGGTTGATTCA
GACATTGACAGTGATTGGAGCAGCTCTGATAGTGATTCAGAACTCGAAAG
TTTGATATTGGATTTAATCCAATACAACATAAAGAAATTTCAAACTACAG
TCAAATTGCTGTGAGCAAGGATCTCCACGATTTTACTAGAAAATTTTTCT
TGATTTCTATATAAGGTGTGTTTACTTGCTTAAAAACCATCCTGAAAATA
TGGGTGTATTTAAGTTTTTGGGCGAGCCTTTTTTTACATGCCCTATCAAT
AATACAGATTCAAGTGTTCACTATGTATTACAATTACACCATTCAATTTT
TGTTGCAATTTATATGAACAAAACCGTCAAAGTCTTCAATGCCACATCAG
ATGGAAACATTGTTTTAAAAAGATTCAGACCTCCGGAATCCTTTGATTGG
ATTGTCACAGTACCATTCAGCTTATCGAAACATTTAAAAAAGTATCATCT
TGTTGCCAAAGAAAACCTGACCAATAAATTCACGTTGATTGATCTAAAAA
CAGGCGATATAGTGCTCAGTTATCAGTCAACTACAGAAAACCATGGTACA
CTTTATCTTAACTGGAATATGCATGAAGCAGCATTAGTATGCTGAGTTTT
TAGAGGTCAAAACCATTGGATTTCATGATATCAGTTTGAAACACTTTGCA
AGGTTAACTTGTCTCCAGTCATTCAGTAAAGATCATTTGAATACTCAACT
TTCAATGTCAATACAAGACTATCTAAGGAATTAAGGAATTAAAGGAATTT
TATATTTTATTTTTAAGGAATTAAAAGAATTACCTCCAGTGGAATCTCCA
GGTGAAGTGAGGCATTTCCACCACAGGCTTTTGAATATCAAGGAGATGCT
GCAACAGACCTTGAAAATGAGAGTGAACTACACCACCAGATTTGTTTGAA
TATAAAGATGAAACTACACCAGAATTAGTTGAACCAGAGGAAGCTGAACC
AGAACCACCAGAAGCTATTGATATCTAGAACAAACAGTGTAGTCACAAAC
AACATCGAATCTGCAGAAAAAGTAATTCCTTTGCAATCAAGTTGAGGACA
CGAAATGCAATCAGTTGCAACTTTTTTGTCCGTAGACAGTAATGAAGAAT
TTGAAAAAACTTGTCAATGAAGTGCTCAAGTGCTCTGTAGACTTGACAAA
ATTCTGACCAATTGAGTTATAAGATTATGTATAAAGGATGATATTATCAA
ATTTGCTAAATTTTATTCTCAGAAAATCTTATTTTTTTCCAATCCACCAT
TATTGTTTTGCTTGATATATTTCAACAGATATCTGTTTCCCAATTTATTA
TGTCATCTCCTAGAAATATTGATCTGTTTCTCTCTGATGACGTCATCAGC
TGGAGTGGGGAAACAGATAGCTTTAAGGAAAAGGTCTTTCCTAGAAAGTC
GGATCTGTTTCCCCATTTTTCAAAAAACGCTCTCTCCTGAAAAAGGCAAA
CAGATATATTTCGGGGAAATGGGCTCGTTGGCTGCTTCTGAACCCTTCTG
AGATCTTTTTCTCGCTTCGCTCGCATTAAATACGCCGTCCAGTTTTCGAC
TATTTGAGAAAATGTCATGCTAAAGAGGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033864	XLOC_033864	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053695-exon-scaffold_233-1575043694:1083055..1085484	TCONS_00053695-exon-scaffold_233-1575043694:1083055..1085484	Clytia hemisphaerica	exon
TCONS_00053695-exon-scaffold_233-1510915933:1083055..1085484	TCONS_00053695-exon-scaffold_233-1510915933:1083055..1085484	Clytia hemisphaerica	exon
TCONS_00053695-exon-scaffold_233-1491911889:1083055..1085484	TCONS_00053695-exon-scaffold_233-1491911889:1083055..1085484	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_233	supercontig	scaffold_233:1083055..1085484 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.880503	0.907291	1.00391	1.24347	2.40014	1.95239	2.28248	2.65152	2.00437	1.42241	2.14554	1.95372	1.86518	1.60297	2.28208	3.51522	2.45582	3.57946	2.75535	2.72981	2.37793	2.36155	2.22227	2.61483	1.56296	2.64062	1.66799	1.27776	1.91087	1.73728

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053695 vs. Swiss-Prot (Human)

BLAST of TCONS_00053695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053695 (transcript) - C. hemisphaerica