TCONS_00053683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053683
Unique NameTCONS_00053683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053683 ID=TCONS_00053683|Name=TCONS_00053683|organism=Clytia hemisphaerica|type=transcript|length=457bp
tgatttttcttttttgtacaAAGGTTTTTCTAATTGGTTTAGACAAGTTA
CttcttttttcaatatattaTGTTGTAATATTTTCagtgtatttttttta
aagttgatccttttaatattttcatttcaaatttgttaAAATCATTTCGA
TACAAATAACGAACACAAGAATGGATAGATGTGCATGGTGAAGCCAGTGT
ATCAGACAATGTGTCACTTACTAACGAATATACGCTAATACCTTAACATC
AACTTGGACAACGCTGGACGTAGCAGAAATCAGTGATTTCAATTCCTTCG
AACTATAATTGCATTGGCAGGAAGAAAGGGTTGACAAATCGTCCATGAAA
GATGTCAAGATTGAACCACGTTTAGCAAATCCTGATTTGATGGAATGGCA
CCGTATAAAAACAAGTtctgataatttttaaaaagagcaCTTTTTTATCT
TAAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_233:918514..920679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053683 ID=TCONS_00053683|Name=TCONS_00053683|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at scaffold_233:918514..920679- (Clytia hemisphaerica)
TGATTTTTCTTTTTTGTACAAAGGTTTTTCTAATTGGTTTAGACAAGTTA
CTTCTTTTTTCAATATATTATGTTGTAATATTTTCAGTGTATTTTTTTTA
AAGTTGATCCTTTTAATATTTTCATTTCAAATTTGTTAAAATCATTTCGA
TACAAATAACGAACACAAGAATGGATAGATGTGCATGGTGAAGCCAGTGT
ATCAGACAATGTGTCACTTACTAACGAATATACGCTAATACCTTAACATC
AACTTGGACAACGCTGGACGTAGCAGAAATCAGTGATTTCAATTCCTTCG
AACTATAATTGCATTGGCAGGAAGAAAGGTATAACTAAGTTTTTAAACAC
TGAATTTGATTTTATGACTTGATGTTTTAAACGGGAACACGTCCATTTCT
GCCGCTACTTTTTTCATTTGAACATACAAATATAAAAACGAATTTTACCT
TTTTTTCATCACAATAAATAAAAGATAAAATTGATATAGAAGAAAATGAA
GACTTTTGCGATGAAAAGACGCAAAGAACTCCAACTTTAACGTCTTTATT
TCTCGGCTTTCTGTTTCAAATCAAAATCTCCGAAAGCAGTCATGACTTTT
TTGTGTCATTAATGAAATAATTTCTCCAAAGAAATCTACTTGTTGTATGC
ATTGTAATCACCAACTGAGTATCCCTTTTCCAATTTGCTTTTAGGGTTGA
CAAATCGTCCATGAAAGATGTCAAGATTGAACCACGTTTAGCANTTTTTA
TAGCTAGTTTATTGTTTGAACGTAGTCTTTCTTTTTTGACTTACCATTCG
ACAGATTCAGGTCATTTTTACGCACACTGCTTTAATTTTTACTACAGCTC
AGCGTCCACTGCGTCATTTACAACCTTTGTAGGTAGAAAAAAAATAGAAA
GATATTTCCAGAAATATTTTTATTTACAACTTTCTGAGTTTCAGAGACAA
GACTATTTGGTTGTTGAACTAGGTGTGATTTAGGATTTTCGATTACTGTA
GTTAATTTATGTGATTTTGTTAGCATTTTACATTTCTCAATTTTATATCA
TCATCGTCTTTTTAACTACAATCTCCACCGTAATATTTGGCACTAAAGGG
GTATTCCCTCAAATTTGAAAACTTCCAGTGATTATTAAGTGCTTTAAAGT
ACGGTAGGTGAGTTTTAACACGAGACTTAACACTCAGAATCTAAAGGCTC
AAAAATGTTCCAATAAGGCTTAAAACATAGCCTGGAAGCCACAAATGGAA
AAAAATACAATTCTCTCCCGATCTTTAAATTCTGAAAAACGTTAAAATAC
CCAAAAGTGCCAATATTTCGGCACCGATTGTAGATGATATTATTGATTTT
TCTTTTTTGTACAAAGGTTTTTCTAATTGGCTTAGACAAGTTACTTCTTT
TTTCAATATATTATGTTGTAATATTTTCAGTGTATTTTTTTAAAAGTGTA
TCCTTTTAATATTTTCATTTCAAATTTGTTAAAATCATTTCGATACAAAT
AACGAACACAAGAATGGATAGATGTGCATGGTGAAGCCAGTGTATCAGAC
AATGTGTCACTTACTAACGAATATACGCTAATACCTTAACGTCAACTTGG
ACAACGCTGGATGTAGCAGAAATCAGTGATTTCAATTCCTTCGAACTATA
ATTGCATTGGCAGGAAGAAAGGTATAACTAAGTTTTTAAACACTGAATTT
GATTTTATGACTTGATGTTTTAAACGGGAACACGTCCATTTCTGCCGCTA
CTTTTTTCATTTGAACATACAAATATAAAAACGAATTTTACCTTTTTTTC
ATCACAATAAATAAAAGATAAAATTGATATAGAAGAAAATGAAGACTTTT
GCGATGAAAAGACGCAAAGAACTCCAACTTTAACGTCTTTATTTCTCGGC
TTTCTGTTTCAAATCAAAATCTCCGAAAGCAGTCATGACTTTTTTGTGTC
ATTAATGAAATAATTTCTCCAAAGAAATCTACTTGTTGTATGCATTGTAA
TCACCAACTGAGTATCCCTTTTCCAATTTGCTTTTAGGGTTGACAAATCG
TCCATGAAAGATGTCAAGATTGAACCACGTTTAGCAAATCCTGATTTGAT
GGAATGGCACCGTATAAAAACAAGTTCTGATAATTTTTAAAAAGAGCACT
TTTTTATCTTAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033858XLOC_033858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053683-exon-scaffold_233-1575043694:920352..920679TCONS_00053683-exon-scaffold_233-1575043694:920352..920679Clytia hemisphaericaexon
TCONS_00053683-exon-scaffold_233-1575043694:918514..918642TCONS_00053683-exon-scaffold_233-1575043694:918514..918642Clytia hemisphaericaexon
TCONS_00053683-exon-scaffold_233-1510915933:920352..920679TCONS_00053683-exon-scaffold_233-1510915933:920352..920679Clytia hemisphaericaexon
TCONS_00053683-exon-scaffold_233-1510915933:918514..918642TCONS_00053683-exon-scaffold_233-1510915933:918514..918642Clytia hemisphaericaexon
TCONS_00053683-exon-scaffold_233-1491911889:920352..920679TCONS_00053683-exon-scaffold_233-1491911889:920352..920679Clytia hemisphaericaexon
TCONS_00053683-exon-scaffold_233-1491911889:918514..918642TCONS_00053683-exon-scaffold_233-1491911889:918514..918642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:918514..920679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.909935	0	0	0	0.192918	0.304893	0.18392	0	0.0278194	0.532583	1.71908	0.381096	0.671617	0.366812	9.73698	9.26753	2.73513	3.19686	6.17308	5.93042	1.36808	0	4.22824	3.45253	10.3858	10.5955	22.4323	21.346	8.21224	7.62445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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