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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053658 ID=TCONS_00053658|Name=TCONS_00053658|organism=Clytia hemisphaerica|type=transcript|length=463bp
GTAATATTTCATTTGATGACACGCTGTCAATTTGGTCATTGATTGACagg
attattttcaaatccagaATCAATTTAGTTTTTAAATCAACCAGGAAGGA
AATAGaattttcataaaaaggataaaattatagaaaaatttctGCAAAAT
GGTTAAAGATGAGGAACTACTACTTGTTAACACGGAACAAGGATCAAATT
CTGATTCCGATGAAGTTGTTGAAGAATTCAAATTACCTCCAAAACAACCA
AAACGCTCTCGCAAGAAAAGGAAACACCTTCCAGACACACGTGTACAGAG
TGGTTCATCCATAATTTCTTGGAGATGTTGTTTCACATTTATCATACTTT
CAATCCTCATATCTGGTGGATTGGTGCTCGCATTCTTCATATACAACATG
CATGATCAAATTGGACATCTGAAAACACAAATAGaatatttgaaaGGCAA
CTCAAATACGTTA Run BLAST on NCBI transcript from alignment at scaffold_233:393305..402121- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053658 ID=TCONS_00053658|Name=TCONS_00053658|organism=Clytia hemisphaerica|type=transcript|length=8817bp|location=Sequence derived from alignment at scaffold_233:393305..402121- (Clytia hemisphaerica)
GTAATATTTCATTTGATGACACGCTGTCAATTTGGTCATTGATTGACAGG
ATTATTTTCAAATCCAGAATCAATTTAGTTTTTAAATCAACCAGGAAGGA
AATAGGTATATTTTTCTGTATTTTTTCAAATTTTAATGGATGCAGAAGAG
CTCATCTCTTACTTTTTCCCCTTTTTTTAATTTTCAAAACTTGTAATATA
TAAATTGGGCCATCCCTAGCCCTGTGCCTGTGTCGTCCGCCCCCCTGTTA
CAGCAGACAAATTCTGATCGAATGGCTGACTCTTGGTCTGGGTATAATAT
TTGGCTATTCCATTTTTAAACCATACATACAGGGGTGAGAATGTATGTTA
GTGTGCTAATTTGAACAATACACATTTACAGGTAGTATCCAATTTCAATT
AAATATCCAATCTTGGGGATTTCCCAAATTCAAGATTAAGTTGGCAGGTT
TCATGATTCCTGCTTTGGTATATATATGAAGACTCCCCGGACAGCCAGAT
TGGTGAACATGAAGAAATAGAAGAAAAACAAAAAATTTACCCCCTGGAAA
ATATTTAATAGATTGTTTTATTTTGTTCAATCACAAACGCCTGTGAAAGA
TAATCCACAGAAAGGATTATTTGAAAAAATAGCGCTCGCATCAAATTCCC
GTTTTTGCTAGAGAACTAAAGATAAGAGAAAATTCATCCTTTAGAATCAA
CGATTGAAGCAAATAAAATGACTACAAGGCCCGAAAAGTCATTAGCGTCA
AAAAGTCATTAGTGCCAAAAAGTAGGGCCAGTCATTAACATTCATCAATC
ATACACCGCAATCTCATTGGTTGAAATTGAAAAAGGACTTTTTGATGGAG
GGAATTACAGAAGCAACTGAGAATTGTCAGCTGTCGGGGGCGTAAAAGAA
TGTGAGAGCAAGATAACCATTCCTGAGGAACAAATATCTATCTAGTATAA
TTAATAAGATTCCTCGTCCATTCCTCAAATATTCCTGAGGAATGGACATT
CATCATAACATTGTTTCCTTGTTGTTTCATGAGCATCTCTTAGGAATGGA
CATTCTTGACTTTGTTATGTGGCATTCCTGGTCCGTTCCTCTGATGTTCA
TCAAGAATAAAAAAATCTGACAGTAACTTTGATGTTGCTAAAACAGTTGA
CTAGGGTACTAAATAAATCTTTCTATGTAGACTTACAATGTATAGCAATG
TGCCCTCCCGGTTGTTACCATAATGGCTTTATGACAACTCCTGAACTTGG
GCACAGGATGTACGGTTACACATTTTGTGGATTGCATTGTGGAGTCACAA
GTCTATGTAGACTTATCGTTATCGATTGCTATTCATTTTAGGTGTGGCAC
TTTGAGCTTTTTTGTACTGGCCCATAGGGTACTAACTTGATTTTTGGATT
TTCTTCCAAAAAATTAGACCACCTCCCTTTTTAGTACACTGTACTAACTT
TTCTCCACAACTGGAATTTTATTACCATCCTTTCAGTATACTGTACTGAC
TTTTCTTTATGACCAGATTTTTGAAACCTACCCTTTAAGCATATTATACT
AGTTGTTTTTTTTGATCAGATAAGTTTAGAAACCACCCCTTATAAGTGCA
CTGTTCTAATTTCTTCTTGGCCAGATAAGTTTAATTGCCACCATGTTAGT
ATGTATACCGCTATATGTTATGCACTAACCTTATTCTTTATTTACAGCTG
TTTATAGTTTCACATCTATTTTTTAAAAGTGTTTATAAAATAGTCTGAGT
CTTTTGTAACACACATACCTTAATTAATTAGCCCTGTAAGAATTTTCAGC
TTTTTTCAGCTACAAAATGAATTTAAAAAGCTTTCACTGACTTTGTTGAA
ACATGATATAGAATATATTTTCCAGACTGGCAAAACACTACTGAAATACC
TGAAAATACATACAATTATAAACTGAAATAAAAGCTACAAAAGTTGCAAT
CCAATTAGATCTAAATTGTAGACCTAGATAAATTTTGTTATCACAGCAAC
AGCTCAAAGCTCAATTTTTTAGTAACTGTTATGAGCCCATTTACGATTGG
TCATTGTATATGCTTACCTAGAGTCTTTGTAACATAGCCTGCAAGATGAA
CGTTATCTGTAAAAGTAAATTCTTTTTATTAATTCTCTTTCAGATAGTTT
TGGAAAAAGGTTTCTACTTTCTTGAAAGTCAGAAGTAATAAGAATTTGAA
AGCTTTGATTTGAACGTTTACACATTCGAATTCCTTTTTGCCATAATGTA
GATAGTACCTTACAGTAAAGAAAATGTCAGAATGAGTGGACTTTAGGCCG
GTCTCAACTTTGCGCATGCTACAGCTTTAAAACAAATCCAATCAAGTAAA
CAGAAAACATTGGGAGAAAATCAGTGTACCAATTTGTAAAGCTTAACCAG
CCTTGACTTGAAGGTCTCGGACCAGCTTGGACCTGGCAAATAATGGCAAA
TATACATGGGAATTTGCTGGGTTTGTGTGTTTCTACCATTGAAATCAGTA
CAATGTACAAACTTCTCAGTGTGTATCAATTCAGAACACCAACGGCTAGT
TCGAAACACGGGTCACGGGACACGGGTGACGGGGCAGCTCTGATCAAAGT
AATTCAAACAGAAAATGTTTTAAAAACGCTAAAAATTATCAAAAAAATCA
ATTTGAAGGGCTTTTATCCACGTATGACTATTTAAAACGTCAAAATCTAA
CCACGTGCTTTCCACGTGCTTTCGAAATTTGCATCCTCAGGTAAGTTATG
GCATGTCTCAAAATTACCATAATTTTTAGATAGCATTAATCGACAGAAAA
TGGCCAAACAAATGACTGAACATGAAGGGTACTATGATGTAGTTTCTAGC
CTGATGTGTAACCTAATTGTTTTTTCGCTTATTTTCGCGAAAAACCGCTT
AAACTGATTATGACGTCATAATCGATGACGTCATAAAAACTAAAAGTTTG
ATTTCTCAATGATGGTTTATTCAATACCCTTCAAACTTACACCAAAAGAT
GTATCTCATTAAAGTCTATCTTTTGACAGAATTTTTTTTCAAAATTCTGA
TGACGTCAGCATAAATAAGAAAAAAACAAAAAATCTAATTTTTTGTTGAC
GTCATCAAAATTTCGAAAAAATCTTTTTTTCAAAAGATAGATTTTGGTGA
GATACATCTTTGGTGTAAGTTTGAAGGGAATTAAAGAAACCATTATTGAG
AAATAAAACTTTTAGTTTTTATGACGTCATCGATTATGACGTAATAATCA
GTTTTAGCGGTTTTTCGCGAAAATAAGCGAAAAAACAATTAGGTTACACA
TCAGGTTAGAAACTACATCATAGTACCCTTCATGTTTAATCATTTGTTTG
GTCAATTTCTGTCGACTAATGCGATCTAAAAATTATGGTAATTTTCAGTT
TGTGAGACATGCCATAAACTTACCCGAGTCGTGTACAACGCAGACCAGAA
AACACCGCAACATATTACATACACATAATAAGCTTATATTATCAATAATA
CACTTTTAGTGCTATATGCATGTTATACGTTATACGTAAGTAATATACAT
AGTACAATTCCCATCACCTGAAAACAGAGCTTTCTCAAGAAAATGATAGT
ACGACTATTGTTAAATCATATCTCATTATATCCCCTCCATCACCTTGAGT
ATGAATATAATTTTAATGGATAATAACGTAGAAATGATGGTACTTTATAA
ATGTGTCAATATTTTCCACCTACCATTATGAATTTTTAATAAAAATGACG
TAATTATACTCATATCTCTAAAACCACTATCTTGCAGCATTTANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGAAATGATG
GTATTTTATAAATGTGTCAATATTTTCCACCTACCATTATGAATTTTTAA
TAAAAATGACGTAATTCTACTCATATCTCTAAAACCACCATCTTGCACAG
CATTTAATCGTTTTAAAACATGTCAATCTATATCCAGTCACATGATTAGC
ATCCTATTGAGCAGGGCTGCAAATAAGCGTCGGTCATCGGTCAATGTCCG
ACTGAAAAAGCTATTTGACCGACTGAAAATCTTTTGTGTCGGTCATGATG
TCCGAATGAAAAAAGGAATAAACCATTAACTTGAGAGTTGAAAATAAATC
TCTTACACCCCTGTCTCTTACTTTCTCTTTCTAAGATCACTTTTATCAAC
CCGCTTTCTTTGTAACTCTTTCGAGGGTGTTTCTAAATTACTTTTGTCAA
CTTGCTTTCTTCTTAACTTTTAAGACTGTTTCTAAGTTAACTTTTATCAA
CTTGCTTTCTTTGTAACTTCCAAGGGTGTTTCAAAGTTAACTTTTATCGA
CTCGCTTTCTTCGTAACTTTCAAGGGTGTTTCAAAGTTAAACTTTTATCG
ACTCGCTTTCTTCGTAACTTTCAAGAGTTTTTTTAAGACCATTTTCATCA
ACTTGCTTACTTCATAACTTTCAAGAGTGTTTCTAAGTTAACTTTTATTA
ACTCGCTTTCTTCTTAACTTTTAAGACTGTTTCTAAGTTAACTTTTATCA
ACTTGCTTTCTTTGTAACTTCCAAGGGTGTTTCTAAGATTACTTTTATCG
AATCAATTTCTCTGTTATATACAGTAACAAACTGTTCAAAGGTAACTTTT
ATTTTTCCTACTTGCTTTCTCCGTAACTTAAAAAAAATATATACACTGAA
TGACCGACAGGATTTTGAGTTTGACCGACAGGATTTCATTTCTGTCGGAC
ATGATGTCCAATTGACTAAAAATATTTATTTGCAGCCCTGATTGAGTATG
AAAAAACATTTTGCTGTAAATTGGTTCAGAGGCCTTATATTTCATGATTT
TGACAATATTTTTGCCATTCAATAACATTTTGTCAAAATTTGTGGGTGAC
ATATTATTTAAAAATTTTCCTGATAATACTTATTTGTATATAATTGTTTC
AGACATACTATACTAGTAGTACTAGTACTATTATGTGTTATTTAGTACGT
GTTATGAATTATACGTCATGATATCGTTATATTTTTTCTTGTCTGTAATT
TGTATGTGCCCCGTGACCCGTGTTTAGAACTAGCCGGAACACCACCCAAG
GATTTATTATACACTGGATATACAAGTACCTGATTTTTGCTGATTTCTCA
CGTTCTAGCTATGTCTGCAGTAATGATATTATTGTTCACTCTCCTTCCCT
CATTAAATGATTTTTCGACACATTTTAATTGCGTTTTATATCAAAAATCA
TTCATCCAATTCCCAAAAGGGACTTAAAACTTTCCCGTGAGAGTCAGATT
CTTCTATTTAATTGCCAATTATAAGTCGTTATGACGTTTCAAGTTGTGAG
AAAGGTCAAAAAGATGTGTTGTGTATAAAAAATTTGATGTTGACACCGGA
AATTTTCAAACTTTAACCACAAAAAAACCACCTTGCCACCACGTGCCTCC
AAAAGATTTTCATACCACAGTGACACCAAGAAGCTCAGGTCTAATGTTTG
TTAATTTTAGCTCTTGTGGTAACAGTTTTGGAAAGATATTCCCAATTGAA
TATCCCATGTTACTATAAGCAACTTGTTTGATTTTCTTTGTCTAATGATG
TTTTTCTCACATTAGATTTCACAAATGTATCCGACTTCGTATTCTAACCT
TACTTTCAAAGTTTTTTCCCTGCAAGGTACAAAGAGAAAACGCTAGAGAA
ATTTTTTAAAATGAGATTAATAAACATTTTTCAAAATCAGATACATTTGA
GCCGCCATGACAGTTGTCCTTTGCGGACATAGCTAGAACATCAATTGTTT
TCTGAAACAAAGAAAATACAATCGTCGCTCTCCATCGTTTTATGAGTCAT
TTATCCAGTGTCTCTTATAATCCCTACACCACCCTTTTAAGTACAATGTA
ATAACTTTTTTATTATATTTTTCTCAGAGAACTACCCTTTTAGTACACTG
TACTAACTCCATTTAACCTAAACAATATACACCACCCCACCAGCTATGGG
CCAGTACACTGACTCAGTACCCCCCTGGTTAAAAAATTAATTCTTGAGGG
AATGAGCTGAGCTGAATTAACATCCAAATGTGTTAAAAAAATCCTAGATA
CTTAAAAAAGGAAAAATGCAAAGTTTTTATAAAGTGTTTTGGAACTTCTT
TCAAAGATTATCTGTTGATTTTCAGTCATTTTGAATTTTCCATAAAGTTA
TCACCTTTTTCATTAATTAATTAAAAGATTTACTTCTATTCTTTTTTTTG
TAGAATTTTCATAAAAAGGATAAAATTATAGAAAAATTTCTGCAAAATGG
TTAAAGATGAGGAACTACTACTTGTTAACACGGAACAAGGATCAAATTCT
GATTCCGATGAAGTTGTTGAAGAATTCAAATTACCTCCAAAACAACCAAA
ACGCTCTCGCAAGAAAAGGTTAGTATCGTTTCTGAATGTTAAGAATGAAT
TTTATATAATTTTTATAGTCACCCAAACCTTTTTTCTGTTAAGTGTTAAA
ACAATTAGTGGTGTAAAATAGAAATAAACAGGATTTGAATTGTAAAAGTT
CATTGGGCTCTTCCAGAAAAAAATTGTACATGCGGGAGTTTGGGGATATT
TTGTATGGGGGGTAGCAAAAAATCATCAAAATTTGCCTTGTCCGGGGGGT
AAATTTGCTCTGTCCGGGGGTAATTTGGGGTGTCCGGGGGTCATCAGATG
CTTGTTCGGGGGTAAAACCTATTGTCCGGGGGGCCAAAAGTCACCCTGTT
CAGGGTAAATCACTAAAAATTGTTATATCCTCCACCCCCATGTACAATTT
TTTTCTGGAAGAGCCCATTTGAGAAAAAGGTAAATTTCAATAGTGATATT
ATAGCAGATCGTCAAAACAATATGTTATGTCCCAACATACCTTTTATACT
ATAGTTACTTTTACACAAACCCAGAAAAAAGAAAAATGAAGGCTCGGAGA
TAATATAGTAACACCAACCTTTACAACAATTCTTTGTAGGAAACACCTTT
CTTACACATTTATGTATAGCAGCTTGTCCAACCGATGAGTTTTCCCACCA
TACCTTTCATATTATAGTTACTTTTACACAAGCCCAGAAAAATAAAACCC
TTGAGATAGCATATTATAATACCAACTGTTACAACAATTCTATGCAGGAA
ATATGTATAGCAGATCCTCCAAACAATAATATGCTATGTTCCAACATACC
ATTTATATTATAGATATGTTTACACAATACCAGAAAATTAAAACCCCTGA
AAAAGCATTTTATAATACCAACTTTTACAACAATTCTATGCAGGAAACAC
CTTCCAGACACACGTGTACAGAGTGGTTCATCCATAATTTCTTGGAGATG
TTGTTTCACATTTATCATACTTTCAATCCTCATATCTGGTGGATTGGTGC
TCGCATTCTTCATATACAACATGCATGATCAAATTGGACATCTGAAAACA
CAAATAGGTGGGTATCCTTCTTTCAAGATAAATATTTTTGTCAAGATAAT
TTTGTTTCAAATTACCTGTCAATATGATGCACCTATCAACCAAGTTGCAA
GTAAGGAATTGTGACTTGGCTGGTGATTTTTCAAAAGATTTGGAGTGACA
AAATAGCTCTAGATTTAGGTTAATGATTATGAGAAGATAAAACAATTAAC
AAATAAAACAGAGCAGGGACAAAAAGTGCTTTGTTACATTTTTTCAACAA
ACAATCTCAAGTTTTCAGCGGAAACCAAAAAGTGTCTTGTGATTACCGAT
CAGCGGCCGTTATTTGCAGCTTTGTAACATAGTCTACTTTTAAAGGGGAC
TGGTGAGTTTACAAGGGAAATGTATTCTCAGCGCATGGTTGTTTTAATTA
GATTGTGCTTATGTGCTCGTCAAAGAGATCATTGTTAGTGGGGTATTAAC
ATACAAAAATGTTTTTGAAAAATTCGAAGATGAAGATTTTTAATTTTAGT
GAGAACTAATTTGTAAAGGACTTTAATAAACCGAATACGATTGAATTGAA
ATAACCCCTTCTACATTGATGATGCCTTTAAGTTTTTGACCTCGTTTCGG
ACAAGAGATGCAAAATCTTGTTTATAACTCTAGCTCTTAGTAGATAAACG
GTGCCCTACAATACCAGTACCAGATTGGCAAATTTGCATCGACCAGGGAT
TTACAATAAAACTATCATTATTATCCATATAGTGGTCATTAAGTAAACTA
TTAAAGATACAATCGGCGTGCGGTATTGAAAGGTTTTGTGACTCAAATTG
TTATACCGGCGCTGAGGAAACTAAAGCGCCAGGCTTCAGAGGGCTGAAAT
ATCATTTACCTCCCGGGTATAGGGCAATAACGTCATTTGCGGCCCGCTCG
AAATTGGATTGAAGTCGTTGCATTGAAGCGAGAGACTAAAATAACGTCAG
AAAAAAACACTTTTTGGTCATTTTCGGCCCGCTCACAAGGTGTTAAAAAT
TTGTTGAAGAGATTGCATTGAAGCGAAAAGACTTAGTTGACTCTAGAAAA
AAACGTTGTTTGAATGTCCGATATGAATAATAATAGTAATAGCGTTAAGT
TTTCGTTCGTTGTTGTCATTAATTCTGCCCGCTTAGTTTGATTATTCGCC
CGATAGTGTCATTTGGGCCCGACGCGAAGCGGGTAGAAAAAAAAACAACA
ACGACCTCAAACTGAACGCTATTGTTATATTATTATTGTATTATCTTTTG
CTATTCTAAATTACCTTAGTTAAATAGGAGACTAGTTTTACTGTGTCAAT
TTTTGGTATAAAGTAATAATTGTTTTGTCTATTTTTAGAATATTTGAAAG
GCAACTCAAATACGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053658-exon-scaffold_233-1575043694:402017..402121 | TCONS_00053658-exon-scaffold_233-1575043694:402017..402121 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1575043694:395704..395868 | TCONS_00053658-exon-scaffold_233-1575043694:395704..395868 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1575043694:394665..394828 | TCONS_00053658-exon-scaffold_233-1575043694:394665..394828 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1575043694:393305..393333 | TCONS_00053658-exon-scaffold_233-1575043694:393305..393333 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1510915933:402017..402121 | TCONS_00053658-exon-scaffold_233-1510915933:402017..402121 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1510915933:395704..395868 | TCONS_00053658-exon-scaffold_233-1510915933:395704..395868 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1510915933:394665..394828 | TCONS_00053658-exon-scaffold_233-1510915933:394665..394828 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1510915933:393305..393333 | TCONS_00053658-exon-scaffold_233-1510915933:393305..393333 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1491911889:402017..402121 | TCONS_00053658-exon-scaffold_233-1491911889:402017..402121 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1491911889:395704..395868 | TCONS_00053658-exon-scaffold_233-1491911889:395704..395868 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1491911889:394665..394828 | TCONS_00053658-exon-scaffold_233-1491911889:394665..394828 | Clytia hemisphaerica | exon |
| TCONS_00053658-exon-scaffold_233-1491911889:393305..393333 | TCONS_00053658-exon-scaffold_233-1491911889:393305..393333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:393305..402121 - |
Blast
The following BLAST results are available for this feature:
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