|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=transcript|length=1156bp
tctctccgatggtatattggcccgctcctttagagctttagcgtgggcgg
ccgccaatacgccatcggaatatcagataattcCTGTACAAGAAAGCTGT
CCGCGCGACCAAGAACCGCGGTGAAAGTATTACGGCGTATAGAATTGGCT
TTTGTATTGCTTGGGGAGTTCCTTTAGCAGTGGCTGggattactttttat
ttcaccATTCCACAATTTCATCATGGTGATTATCCACTCAATTTTTGTGT
AATTGGTGGAACAGTCTTCAACTATGTTGTTCTCATACCAGTATCATTCT
GCATTTTATTCAATTTCTCCATTTTTATTCCTGTCACGCGTAAAATACAT
AACCACATGACAAGACACGCAAATCtacaaaaagattttgaaattacTCT
CTGGAAGAGAGCTAAAGTGACTTTATCTTGTACAACATTACTCGGATTAA
CATGGGTTTTTGGTTATCTTTCAATCGGTGATTTGAGGGAAATCTTCCAA
TGGTTATTTTGCATAACGAACTCTTTACAGGGATTCTTTATATTCCTGTT
CTACGTTCTGTTAAATGAGTCACTCGTTAAAGCATGGAAAAAGATTATTT
TACCGAACAGCCGAACAAACAGTAATAGTGAACAATCGCGTTCCTTAATG
TTTCCTTGGAGTTTTAAAAGGAATGGGACAATGACTTATAGcatgaaaga
aaaacataacTCGGTTAATGGAGGAGGTCGTAGCTCAGCTACGCTGGTGG
CGTGTAAAAACACACCCGAAAAATTGGACAGTCTATTCGAGTGAACGTTG
AAAAATAGATCtcatcggagtttttgatttttctaaaaaaggcgatgcat
tgtgggattgtttctggagtattacaatagaattccctcgaggaattcct
aagagatttctattgtaatactcccgaaacaatcccacaatgcatcactt
ttttagaaaaatcaaaaactccaataAGATCTATTTGCTGAAATTACAGC
AATATTTCACGATTTGGATGAGGTTTTTTAGCAGCTAAGAAAAGAGAGAG
AGTTAAGAAAAACAAACTAATGATATAGGACAGTCTTTTCGTGTATATGT
TTAAATATTGTCTGATAATTTTCTAATAATTCTTCATTTGATGCACCTTT
GTAGTT Run BLAST on NCBI protein sequence of TCONS_00053649-protein >TCONS_00053649-protein ID=TCONS_00053649-protein|Name=TCONS_00053649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MTRHANLQKDFEITLWKRAKVTLSCTTLLGLTWVFGYLSIGDLREIFQWL
FCITNSLQGFFIFLFYVLLNESLVKAWKKIILPNSRTNSNSEQSRSLMFP
WSFKRNGTMTYSMKEKHNSVNGGGRSSATLVACKNTPEKLDSLFE Run BLAST on NCBI transcript from alignment at scaffold_233:267096..269523- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at scaffold_233:267096..269523- (Clytia hemisphaerica)
TCTCTCCGATGGTATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGGGCGG
CCGCCAATACGCCATCGGAATATCAGATAATTCCTGTACAAGAAAGCTGT
CCGCGCGACCAAGAACCGCGGTGAAAGTATTACGGCGTATAGAATTGGCT
TTTGTATTGCTTGGGGTAAGTTTTATAGTTATTTTATGATTCTGTATTTG
CTGGGGTTAATGATATTTTTGGGGGGCTGATGGATACTTTCTCTCCGAGG
CATGGTTCTCATTGGAAAGACTGAGAAAGGCAGAAAAGTTTAAAGCCATT
GACCTTTTACATAGTTATAATGTATGTTGATTCAGCAGATTGAAATAAAT
AGAATCTTTTGTAATGAATAAAGAAACATGTGGAGCAAGATTTTTTTCTT
CCTTTTATTTACAAATTTGAAAGGACTCTTTTATTAAAATTTTGCTGACA
TCAGTTTCAGACGAGTCGGGTGTATATAACACCGTATAATTCCTTTAAAT
TACCATAGTTGCTGCCATATTCCTGTTGCAGCTCTTATATATTTAAGAGA
ACTTCTTTTTAAAATCATAAGTGGACATGATGTGCGCACGAAAGTAGTAA
TAGTTCTATTTATACTGAGACGGTTAATTTGTCTGAGACGAGCAATTTAG
AAAATGAGCATTATGGAGGAGTGTACTTTTCATTCATGTTTCAATAAATA
GGATCTCCTCCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTT
TTCTGTCTCAGTATAAATAGAACTTATTTTACTCAATATTCAATATTTGT
TAACCTGCATCATACATGTACTTAAATACTTTATTATCGCAACTTTTAGG
AGTTCCTTTAGCAGTGGCTGGGATTACTTTTTATTTCACCATTCCACAAT
TTCATCATGGTGATTATCCACTCAATTTGTAAGTAAATGTACCACTTTGA
ATCTAACTTGAAACCACTTTTCTACCGGGTATTCGAGTCAACTTCGATAT
ATCTTATTAATCCTCTTACAAAACCAGTAGCGTAGACAAGAAGGGCGCAA
AATTTGTGTATGAGAGCAGATTTTTATGACACTGTAATCATCCTTTATTA
TAAATAGATAATTCCTGTGTCATAAGAATCTGCTCTTCTACACAAATTTT
GCGCCCCTCTTGTCTACGCTACTGAAAACGTCGATTTGCCAACGGTGGTT
ACAGAAAGTAAATTTGGAAATCAATGACGGAGAGAGTTCCGCCTTTTTTC
TGTTATGGGAATATTTTCCCTCTATAAAAAACCTTGAGAACCTTCTGAAA
CCACCTTTAAATCTTCCATCCGAAAGCTTCGACGATTGGGGTAAAAATAT
CAAATTTATGAAAAAATTGACGAATAAATTTTTTTTTCAGACAAATATTT
TTAAACCGATGAATTTTCAATCGACGTGTATTTTAAATTGACGTGTTTTT
CTACTTCACTGTACTGATCACGCTATTAATATTATTGTTTCTACCAATTT
TTCTTTTCTACTTTAGTTGTGTAATTGGTGGAACAGTCTTCAACTATGTT
GTTCTCATACCAGTATCATTCTGCATTTTATTCAATTTCTCCATTTTTAT
TCCTGTCACGCGTAAAATACATAACCACATGACAAGACACGCAAATCTAC
AAAAAGATTTTGAAATTACTCTCTGGAAGAGAGCTAAAGTGACTTTATCT
TGTACAACATTACTCGGATTAACATGGGTTTTTGGTTATCTTTCAATCGG
TGATTTGAGGGAAATCTTCCAATGGTTATTTTGCATAACGAACTCTTTAC
AGGGATTCTTTATATTCCTGTTCTACGTTCTGTTAAATGAGTCACTCGTT
AAAGCATGGAAAAAGATTATTTTACCGAACAGCCGAACAAACAGTAATAG
TGAACAATCGCGTTCCTTAATGTTTCCTTGGAGTTTTAAAAGGAATGGGA
CAATGACTTATAGCATGAAAGAAAAACATAACTCGGTTAATGGAGGAGGT
CGTAGCTCAGCTACGCTGGTGGCGTGTAAAAACACACCCGAAAAATTGGA
CAGTCTATTCGAGTGAACGTTGAAAAATAGATCTCATCGGAGTTTTTGAT
TTTTCTAAAAAAGGCGATGCATTGTGGGATTGTTTCTGGAGTATTACAAT
AGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATACTCCCGAA
ACAATCCCACAATGCATCACTTTTTTAGAAAAATCAAAAACTCCAATAAG
ATCTATTTGCTGAAATTACAGCAATATTTCACGATTTGGATGAGGTTTTT
TAGCAGCTAAGAAAAGAGAGAGAGTTAAGAAAAACAAACTAATGATATAG
GACAGTCTTTTCGTGTATATGTTTAAATATTGTCTGATAATTTTCTAATA
ATTCTTCATTTGATGCACCTTTGTAGTT Coding sequence (CDS) from alignment at scaffold_233:267096..269523- >TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_233:267096..269523- (Clytia hemisphaerica)
ATGACAAGACACGCAAATCTACAAAAAGATTTTGAAATTACTCTCTGGAA
GAGAGCTAAAGTGACTTTATCTTGTACAACATTACTCGGATTAACATGGG
TTTTTGGTTATCTTTCAATCGGTGATTTGAGGGAAATCTTCCAATGGTTA
TTTTGCATAACGAACTCTTTACAGGGATTCTTTATATTCCTGTTCTACGT
TCTGTTAAATGAGTCACTCGTTAAAGCATGGAAAAAGATTATTTTACCGA
ACAGCCGAACAAACAGTAATAGTGAACAATCGCGTTCCTTAATGTTTCCT
TGGAGTTTTAAAAGGAATGGGACAATGACTTATAGCATGAAAGAAAAACA
TAACTCGGTTAATGGAGGAGGTCGTAGCTCAGCTACGCTGGTGGCGTGTA
AAAACACACCCGAAAAATTGGACAGTCTATTCGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053649-exon-scaffold_233-1575043694:269359..269523 | TCONS_00053649-exon-scaffold_233-1575043694:269359..269523 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1575043694:268596..268674 | TCONS_00053649-exon-scaffold_233-1575043694:268596..268674 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1575043694:267096..268007 | TCONS_00053649-exon-scaffold_233-1575043694:267096..268007 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1510915933:269359..269523 | TCONS_00053649-exon-scaffold_233-1510915933:269359..269523 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1510915933:268596..268674 | TCONS_00053649-exon-scaffold_233-1510915933:268596..268674 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1510915933:267096..268007 | TCONS_00053649-exon-scaffold_233-1510915933:267096..268007 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1491911889:269359..269523 | TCONS_00053649-exon-scaffold_233-1491911889:269359..269523 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1491911889:268596..268674 | TCONS_00053649-exon-scaffold_233-1491911889:268596..268674 | Clytia hemisphaerica | exon |
| TCONS_00053649-exon-scaffold_233-1491911889:267096..268007 | TCONS_00053649-exon-scaffold_233-1491911889:267096..268007 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:267096..269523 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000832 | GPCR_2_secretin-like |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
