TCONS_00053649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053649
Unique NameTCONS_00053649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=transcript|length=1156bp
tctctccgatggtatattggcccgctcctttagagctttagcgtgggcgg
ccgccaatacgccatcggaatatcagataattcCTGTACAAGAAAGCTGT
CCGCGCGACCAAGAACCGCGGTGAAAGTATTACGGCGTATAGAATTGGCT
TTTGTATTGCTTGGGGAGTTCCTTTAGCAGTGGCTGggattactttttat
ttcaccATTCCACAATTTCATCATGGTGATTATCCACTCAATTTTTGTGT
AATTGGTGGAACAGTCTTCAACTATGTTGTTCTCATACCAGTATCATTCT
GCATTTTATTCAATTTCTCCATTTTTATTCCTGTCACGCGTAAAATACAT
AACCACATGACAAGACACGCAAATCtacaaaaagattttgaaattacTCT
CTGGAAGAGAGCTAAAGTGACTTTATCTTGTACAACATTACTCGGATTAA
CATGGGTTTTTGGTTATCTTTCAATCGGTGATTTGAGGGAAATCTTCCAA
TGGTTATTTTGCATAACGAACTCTTTACAGGGATTCTTTATATTCCTGTT
CTACGTTCTGTTAAATGAGTCACTCGTTAAAGCATGGAAAAAGATTATTT
TACCGAACAGCCGAACAAACAGTAATAGTGAACAATCGCGTTCCTTAATG
TTTCCTTGGAGTTTTAAAAGGAATGGGACAATGACTTATAGcatgaaaga
aaaacataacTCGGTTAATGGAGGAGGTCGTAGCTCAGCTACGCTGGTGG
CGTGTAAAAACACACCCGAAAAATTGGACAGTCTATTCGAGTGAACGTTG
AAAAATAGATCtcatcggagtttttgatttttctaaaaaaggcgatgcat
tgtgggattgtttctggagtattacaatagaattccctcgaggaattcct
aagagatttctattgtaatactcccgaaacaatcccacaatgcatcactt
ttttagaaaaatcaaaaactccaataAGATCTATTTGCTGAAATTACAGC
AATATTTCACGATTTGGATGAGGTTTTTTAGCAGCTAAGAAAAGAGAGAG
AGTTAAGAAAAACAAACTAATGATATAGGACAGTCTTTTCGTGTATATGT
TTAAATATTGTCTGATAATTTTCTAATAATTCTTCATTTGATGCACCTTT
GTAGTT
Run BLAST on NCBI

protein sequence of TCONS_00053649-protein

>TCONS_00053649-protein ID=TCONS_00053649-protein|Name=TCONS_00053649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MTRHANLQKDFEITLWKRAKVTLSCTTLLGLTWVFGYLSIGDLREIFQWL
FCITNSLQGFFIFLFYVLLNESLVKAWKKIILPNSRTNSNSEQSRSLMFP
WSFKRNGTMTYSMKEKHNSVNGGGRSSATLVACKNTPEKLDSLFE
Run BLAST on NCBI

transcript from alignment at scaffold_233:267096..269523-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at scaffold_233:267096..269523- (Clytia hemisphaerica)
TCTCTCCGATGGTATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGGGCGG
CCGCCAATACGCCATCGGAATATCAGATAATTCCTGTACAAGAAAGCTGT
CCGCGCGACCAAGAACCGCGGTGAAAGTATTACGGCGTATAGAATTGGCT
TTTGTATTGCTTGGGGTAAGTTTTATAGTTATTTTATGATTCTGTATTTG
CTGGGGTTAATGATATTTTTGGGGGGCTGATGGATACTTTCTCTCCGAGG
CATGGTTCTCATTGGAAAGACTGAGAAAGGCAGAAAAGTTTAAAGCCATT
GACCTTTTACATAGTTATAATGTATGTTGATTCAGCAGATTGAAATAAAT
AGAATCTTTTGTAATGAATAAAGAAACATGTGGAGCAAGATTTTTTTCTT
CCTTTTATTTACAAATTTGAAAGGACTCTTTTATTAAAATTTTGCTGACA
TCAGTTTCAGACGAGTCGGGTGTATATAACACCGTATAATTCCTTTAAAT
TACCATAGTTGCTGCCATATTCCTGTTGCAGCTCTTATATATTTAAGAGA
ACTTCTTTTTAAAATCATAAGTGGACATGATGTGCGCACGAAAGTAGTAA
TAGTTCTATTTATACTGAGACGGTTAATTTGTCTGAGACGAGCAATTTAG
AAAATGAGCATTATGGAGGAGTGTACTTTTCATTCATGTTTCAATAAATA
GGATCTCCTCCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTT
TTCTGTCTCAGTATAAATAGAACTTATTTTACTCAATATTCAATATTTGT
TAACCTGCATCATACATGTACTTAAATACTTTATTATCGCAACTTTTAGG
AGTTCCTTTAGCAGTGGCTGGGATTACTTTTTATTTCACCATTCCACAAT
TTCATCATGGTGATTATCCACTCAATTTGTAAGTAAATGTACCACTTTGA
ATCTAACTTGAAACCACTTTTCTACCGGGTATTCGAGTCAACTTCGATAT
ATCTTATTAATCCTCTTACAAAACCAGTAGCGTAGACAAGAAGGGCGCAA
AATTTGTGTATGAGAGCAGATTTTTATGACACTGTAATCATCCTTTATTA
TAAATAGATAATTCCTGTGTCATAAGAATCTGCTCTTCTACACAAATTTT
GCGCCCCTCTTGTCTACGCTACTGAAAACGTCGATTTGCCAACGGTGGTT
ACAGAAAGTAAATTTGGAAATCAATGACGGAGAGAGTTCCGCCTTTTTTC
TGTTATGGGAATATTTTCCCTCTATAAAAAACCTTGAGAACCTTCTGAAA
CCACCTTTAAATCTTCCATCCGAAAGCTTCGACGATTGGGGTAAAAATAT
CAAATTTATGAAAAAATTGACGAATAAATTTTTTTTTCAGACAAATATTT
TTAAACCGATGAATTTTCAATCGACGTGTATTTTAAATTGACGTGTTTTT
CTACTTCACTGTACTGATCACGCTATTAATATTATTGTTTCTACCAATTT
TTCTTTTCTACTTTAGTTGTGTAATTGGTGGAACAGTCTTCAACTATGTT
GTTCTCATACCAGTATCATTCTGCATTTTATTCAATTTCTCCATTTTTAT
TCCTGTCACGCGTAAAATACATAACCACATGACAAGACACGCAAATCTAC
AAAAAGATTTTGAAATTACTCTCTGGAAGAGAGCTAAAGTGACTTTATCT
TGTACAACATTACTCGGATTAACATGGGTTTTTGGTTATCTTTCAATCGG
TGATTTGAGGGAAATCTTCCAATGGTTATTTTGCATAACGAACTCTTTAC
AGGGATTCTTTATATTCCTGTTCTACGTTCTGTTAAATGAGTCACTCGTT
AAAGCATGGAAAAAGATTATTTTACCGAACAGCCGAACAAACAGTAATAG
TGAACAATCGCGTTCCTTAATGTTTCCTTGGAGTTTTAAAAGGAATGGGA
CAATGACTTATAGCATGAAAGAAAAACATAACTCGGTTAATGGAGGAGGT
CGTAGCTCAGCTACGCTGGTGGCGTGTAAAAACACACCCGAAAAATTGGA
CAGTCTATTCGAGTGAACGTTGAAAAATAGATCTCATCGGAGTTTTTGAT
TTTTCTAAAAAAGGCGATGCATTGTGGGATTGTTTCTGGAGTATTACAAT
AGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATACTCCCGAA
ACAATCCCACAATGCATCACTTTTTTAGAAAAATCAAAAACTCCAATAAG
ATCTATTTGCTGAAATTACAGCAATATTTCACGATTTGGATGAGGTTTTT
TAGCAGCTAAGAAAAGAGAGAGAGTTAAGAAAAACAAACTAATGATATAG
GACAGTCTTTTCGTGTATATGTTTAAATATTGTCTGATAATTTTCTAATA
ATTCTTCATTTGATGCACCTTTGTAGTT

Coding sequence (CDS) from alignment at scaffold_233:267096..269523-

>TCONS_00053649 ID=TCONS_00053649|Name=TCONS_00053649|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_233:267096..269523- (Clytia hemisphaerica)
ATGACAAGACACGCAAATCTACAAAAAGATTTTGAAATTACTCTCTGGAA
GAGAGCTAAAGTGACTTTATCTTGTACAACATTACTCGGATTAACATGGG
TTTTTGGTTATCTTTCAATCGGTGATTTGAGGGAAATCTTCCAATGGTTA
TTTTGCATAACGAACTCTTTACAGGGATTCTTTATATTCCTGTTCTACGT
TCTGTTAAATGAGTCACTCGTTAAAGCATGGAAAAAGATTATTTTACCGA
ACAGCCGAACAAACAGTAATAGTGAACAATCGCGTTCCTTAATGTTTCCT
TGGAGTTTTAAAAGGAATGGGACAATGACTTATAGCATGAAAGAAAAACA
TAACTCGGTTAATGGAGGAGGTCGTAGCTCAGCTACGCTGGTGGCGTGTA
AAAACACACCCGAAAAATTGGACAGTCTATTCGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033839XLOC_033839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053649-exon-scaffold_233-1575043694:269359..269523TCONS_00053649-exon-scaffold_233-1575043694:269359..269523Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1575043694:268596..268674TCONS_00053649-exon-scaffold_233-1575043694:268596..268674Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1575043694:267096..268007TCONS_00053649-exon-scaffold_233-1575043694:267096..268007Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1510915933:269359..269523TCONS_00053649-exon-scaffold_233-1510915933:269359..269523Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1510915933:268596..268674TCONS_00053649-exon-scaffold_233-1510915933:268596..268674Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1510915933:267096..268007TCONS_00053649-exon-scaffold_233-1510915933:267096..268007Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1491911889:269359..269523TCONS_00053649-exon-scaffold_233-1491911889:269359..269523Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1491911889:268596..268674TCONS_00053649-exon-scaffold_233-1491911889:268596..268674Clytia hemisphaericaexon
TCONS_00053649-exon-scaffold_233-1491911889:267096..268007TCONS_00053649-exon-scaffold_233-1491911889:267096..268007Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053649-proteinTCONS_00053649-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:267096..269523 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07833	1.21444	0.459707	1.11564	0.833044	0.646552	1.3713	1.74774	0.920777	1.03554	1.92781	1.21112	7.51159	8.55449	5.42922	7.2302	5.7851	7.0612	7.29016	6.54898	9.55344	9.08761	5.45251	5.59304	4.49354	8.28887	13.1143	11.8599	37.8654	32.2049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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