TCONS_00053607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053607
Unique NameTCONS_00053607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053607 ID=TCONS_00053607|Name=TCONS_00053607|organism=Clytia hemisphaerica|type=transcript|length=953bp
GCAGTTTTACCGGTTGGAGCCtttacagaaaatttttttgaaagaatctC
AAAGATGGAAGGACCAAGAACTATCAATACACATTTTTGTTATGATATGT
TACCCAAATCTCTTCACGAAGACCAAAAAGGAAAAATCGTTTCAGTTATT
CGGAATCCTCGTGACATTTGTGCTTCATTCTGTCATCACTTCAAACTGAC
CGACAAATACACAGGAGGTGTTGAACTTCTGGCTGATGTTTATATGCGTG
ATGTTGGACTTTTCTATGGACCTCATTTCACCAACGTCTTAAGCTATTGG
AGCCGTCGAGAACAGGATAACATTCTGATCGTTTCCTatgaagaaatgaa
gaaagattTGGCGTCAGTGATCAGAAAGATTGCCGACTTTCTTGGTAAAG
AAATAACAGATGAGGATGTAGCAAAGATTGTCGATTTCACCAACAttgaa
aatatgaagaaaaatcCCATGAGTAACCTGGAAGAACGAATCAATATGAT
CAAACGTTCACAAAACAACACAGAAGAAAAAGGGACATTCATCAACAAAG
GCAAAACAGGTGGTTGGAAGACTGCTTTCACTCAAGAAACTATTCAAAGA
TTTGAAGAATGGGAAAAGAAACATTTAGAAGGAACTGGACTAGCCTTCAT
TTACGAATTATAAAAAAGTGGGTATAGCAAATGAAGAAGGTAACGCCCTC
AAGCATCATCATCAATTCTTGTTCGTTTGAACAAACTGTATAatttaata
gacgatatcgactttccgtgaatttttttgcgcatgcatcatgggtaatc
attcggggagaattcggaaagccgatatcgtctattaaatAAGATACTGT
Tgtgcgcagttttgtaatttttgtgcagtttaatattttccgcgcagttt
tgtattttattgcgcagttttggaatttttctatgcagttttgtaatttc
gaG
Run BLAST on NCBI

transcript from alignment at scaffold_233:1234509..1237483+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053607 ID=TCONS_00053607|Name=TCONS_00053607|organism=Clytia hemisphaerica|type=transcript|length=2975bp|location=Sequence derived from alignment at scaffold_233:1234509..1237483+ (Clytia hemisphaerica)
GCAGTTTTACCGGTTGGAGCCtttacagaaaatttttttgaaagaatctC
AAAGATGGAAGGACCAAGAACTATCAATACACATTTTTGTTATGATATGT
TACCCAAATCTCTTCACGAAGACCAAAAAGGAAAAGTAAGACAAAATAAC
CCTTTTATCATATCTTTGATTTCTAGGCTTTTCTTAGACTGAAGATGAAA
ATTACAAGGACATATCAACATCATATGAGGATTGGAATTAGATTTAAACT
CATGATTTTTCGCAATTTTAGTACCCTGGTCTATCGAATAGACCTTTCCC
GGAGACTCATTCGGGAATTTACAATTTAACGAGTCCATAATTCCACTTTT
TTTTCCTCAGATCGTTTCAGTTATTCGGAATCCTCGTGACATTTGTGCTT
CATTCTGTCATCACTTCAAACTGACCGACAAATACACAGGAGGTGTTGAA
CTTCTGGCTGATGTTTATATGCGTGATGTTGGACTTTTCTATGGACCTCA
TTTCACCAACGTCTTAAGCTATTGGAGCCGTCGAGAACAGGTATATATTT
GAGTCGAACCTCATCAAAAATTAGGTGAACCTAATAGGAATATTCAAAAG
GTTTCtatacatcgttggaaagataattttatcagcttttcgAATGAAGG
TTAAAGTCAGTTTGTAGGTGCTagagaaaatcaaaaaggaaaaaatacaa
GTTCTCATTTTCGGAGTATTTTTTCCAAGGATCTCATTTCACGAACttta
tttgatttatttgaACCGGAGATAACAGGTAGTGAATAACCAGTAGGGAT
CATCACCCAATCCAACTGGATGTGAATAGTGCAACAAACTTGATTATGAA
TAACTGGAAAAACTACTAGAGTTTGACGTTTCAATCAGAATTTAACCAAA
TTAGTCCCTTCATTCTTTTCTTTAGGATAACATTCTGATCGTTTCCTatg
aagaaatgaagaaagattTGGCGTCAGTGATCAGAAAGATTGCCGACTTT
CTTGGTAAAGAAATAACAGATGAGGATGTAGCAAAGATTGTCGATTTCAC
CAACAttgaaaatatgaagaaaaatcCCATGAGTAACCTGGAAGAACGAA
TCAATGTAAGAGTgttaatatttctttattataTACTTTTGATTCCGAAC
TGTCCATGTTGGAAAGGATTATATAATGATTACTTTAAAAGAGTGATTCA
GATTTATTTGCTTGGATCTTTGAAATtctgtttttcatttaaaagGATTT
TTATCTGATATTACAATCCGTGAGACAAAAAAACAAGATAATTTACTCTT
AGAAGGAGGCGCCAAAGTCAGAATTTTCGCATATTGCCTCCGCAGTGTGA
CACATATCTGGTCTGCCTACCACGCTAATGAACCCAATATACCGTGCAGT
TTCAATATATGGAGGAAGAAAGCTCAAGAGCTTTTCAAACTGTGTCTTGT
CTTCAACCAGATCTATTTAATTGATTCAGGGATCTGCTTATACGATAGAG
GGATAGTAATcgcaggaagaaaaaaaatatatagtttatagaagtataaa
accttcaactactcaaagtGGAAACACTAAAGACAAAACCCACAAAAAAA
AGACAATACGAATtgcaacaaaaatctagaatgaacattcacagaaaatc
gaTCAGGTTGGAGTTGAAAAGAAACATGTAatgacatagaaatccgtcaa
tgtaaaactagtgatctaaaatgactATAAGGAAGAAAGCagctcaatat
gagttaagatggaaagaagtaactcaatatgagtcaaaaaatatttcaag
aaaccTAATAAtatgttcctcagttttcgacctacacaggatttcggcct
ttaacgaaaatatcctcctatatgatggaaatagggttgtgtaggtaggc
caagcagtgttaattagacatcaccacagataaaagatagtaaaaagatg
tgtttagtgaAAGTATAAAACGCGCGCAACAATATAGAATAaactaaaac
gtaaaaaccacggaaccagccgaagaaactaaaataacattGAGAAAAGA
AGTACTACTAGACAAAGCtgccacacctttgacacgtttctgccacaGCG
TTGAAGAAAGCATACTAGAAGAGAAAGAACTGGGATTGGATTGCCACTTt
ccaaccctgtggctctcacacacattttacagttcaaagaataagatgga
aagagtggtgaaagaatgagaatttaaaaatatatatatatgcGCAGTAG
AGTCAGGGCATCAGGGCGTCAGAGGGGTTAACAGAAAATATAGTGGCAGT
AGAGTTTGGAGCACTGTTaacacctccgccactgttTACTCCGCCCCGGG
CTAACAACTCATTCGTAAATTTTCCCGCCtactaaactattcccttttta
gtgatcttgtgtaaaTGATAGGATTGTCTAGAATCTGCCCTAATAATATC
TACTTTTGAATCTTTCAGATGATCAAACGTTCACAAAACAACACAGAAGA
AAAAGGGACATTCATCAACAAAGGCAAAACAGGTGGTTGGAAGACTGCTT
TCACTCAAGAAACTATTCAAAGATTTGAAGAATGGGAAAAGAAACATTTA
GAAGGAACTGGACTAGCCTTCATTTACGAATTATAAAAAAGTGGGTATAG
CAAATGAAGAAGGTAACGGNCTCCTTCATTTACGAATTATAAAAAATGGG
TATGAAAGAAGGTAACGCCCTCAAGCATCATCATCAATTCTTGTTCGTTT
GAACAAACTGTATAatttaatagacgatatcgactttccgtgaatttttt
tgcgcatgcatcatgggtaatcattcggggagaattcggaaagccgatat
cgtctattaaatAAGATACTGTTgtgcgcagttttgtaatttttgtgcag
tttaatattttccgcgcagttttgtattttattgcgcagttttggaattt
ttctatgcagttttgtaatttcgaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033823XLOC_033823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053607-exon-scaffold_233-1491911889:1234509..1234643TCONS_00053607-exon-scaffold_233-1491911889:1234509..1234643Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1510915933:1234509..1234643TCONS_00053607-exon-scaffold_233-1510915933:1234509..1234643Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1575043694:1234509..1234643TCONS_00053607-exon-scaffold_233-1575043694:1234509..1234643Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1491911889:1234869..1235048TCONS_00053607-exon-scaffold_233-1491911889:1234869..1235048Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1510915933:1234869..1235048TCONS_00053607-exon-scaffold_233-1510915933:1234869..1235048Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1575043694:1234869..1235048TCONS_00053607-exon-scaffold_233-1575043694:1234869..1235048Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1491911889:1235434..1235613TCONS_00053607-exon-scaffold_233-1491911889:1235434..1235613Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1510915933:1235434..1235613TCONS_00053607-exon-scaffold_233-1510915933:1235434..1235613Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1575043694:1235434..1235613TCONS_00053607-exon-scaffold_233-1575043694:1235434..1235613Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1491911889:1236977..1237170TCONS_00053607-exon-scaffold_233-1491911889:1236977..1237170Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1510915933:1236977..1237170TCONS_00053607-exon-scaffold_233-1510915933:1236977..1237170Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1575043694:1236977..1237170TCONS_00053607-exon-scaffold_233-1575043694:1236977..1237170Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1491911889:1237220..1237483TCONS_00053607-exon-scaffold_233-1491911889:1237220..1237483Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1510915933:1237220..1237483TCONS_00053607-exon-scaffold_233-1510915933:1237220..1237483Clytia hemisphaericaexon
TCONS_00053607-exon-scaffold_233-1575043694:1237220..1237483TCONS_00053607-exon-scaffold_233-1575043694:1237220..1237483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1234509..1237483 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133147	0	0.131718	0	0	0.0509352	0	0.0574361	0	0	0.0484004	0	0	0	0	0	1.38168	0.900124	0	0	3.59399	3.97512	6.1728	9.7141	0.149392	0	153.243	196.412	1.21518	1.07511
Blast
[Close]
BLAST of TCONS_00053607 vs. Swiss-Prot (Human)
Match: ST1A2 (Sulfotransferase 1A2 OS=Homo sapiens GN=SULT1A2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.306e-26
Identity = 66/209 (31.58%), Postives = 105/209 (50.24%), Query Frame = 1 
Query:   40 ERISKMEGPRTINTHFCYDMLPKSLHEDQKGKIVSVIRNPRDICASFCHHFKLTDKYT--GGVELLADVYMRDVGLFYGPHFTNVLSYWSRREQDNILIVSYEEMKKDLASVIRKIADFLGKEITDEDVAKIVDFTNIENMKKNPMSNLEERINMIKRSQNNTEEKGTFINKGKTGGWKTAFTQETIQRFEEWEKKHLEGTGLAFIYEL 660
            E +     PR + TH    +LP++L  DQK K+V V RN +D+  S+ H + +   Y   G  E   + +M    + YG  + +V  +W       +L + YE+MK++    I+KI +F+G+ + +E V  +V+ T+ + MKKNPM+N         R +        F+ KG  G WKT FT    +RF+    K + G  L+F  EL
Sbjct:   94 ETLKNTPAPRLLKTHLPLALLPQTLL-DQKVKVVYVARNAKDVAVSYYHFYHMAKVYPHPGTWESFLEKFMAG-EVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETVDLMVEHTSFKEMKKNPMTNYT-----TVRREFMDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAKKMAGCSLSFRSEL 295
The following BLAST results are available for this feature:
BLAST of TCONS_00053607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1A22.306e-2631.58Sulfotransferase 1A2 OS=Homo sapiens GN=SULT1A2 PE... [more]
back to top