TCONS_00053599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053599
Unique NameTCONS_00053599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053599 ID=TCONS_00053599|Name=TCONS_00053599|organism=Clytia hemisphaerica|type=transcript|length=1102bp
ATTGAGGGAGCCTGAACaaaccttttgaaaaatgtttcatcaAATTGTAT
AATTActgttttcttcaattttccgTTTATTTCACTACAGAACGAAGATG
GGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTC
ATATGGAGCTGACaaatgtgaaaatgaaagttgggATTTGACATGCTGGA
GAAAGAAGAAGTTTACTCAGAAGGATATGTGCTACAAAGCGGAGGGTAAA
CAGAAATGCGCTGAAACATGTAATCTTTGTAACGAGAAGTGCGGTATCTC
CAAAGTTTCACAAAGTCGAATTGTCAACGGTGTCGAAGCGAAAGAAGGAG
CTTGGCCATGGATCGCCTCTCTCCAACTTCAAGGAAAACATTTCTGTGGA
GCTACCATTTTGACACCAAAATGGGTTCTAGCAGCCAGTCATTGTGTTCA
ACCACTGAAGAACATGCCAAATGCTATGGACGCGTTTACCGTGACACTGG
GAGCTCACGATATCACCAAATCGGAACCTAAACAACAAACAATCAAAGTG
AAACGTTTCATCATACACAAGGATTATGATACACGTGTGATGATGGCAGA
TATCGCTCTTCTGGAGCTGGAGACACCAGCAATGTTCAATGATCGTGTTG
TGACACCCTGTCTCCCCAATGAAGGAAGTTATCCACCAAAAGATTTGAAA
TGTGTGGTTGCAGGATGGGGCATTACCAAATTCCCAAGCACCGATACCGC
ATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGTACACCACATCAAG
GTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAACGGATTCACCAAA
ACATCTGAGGgTAAGCAACAACCAAATGCATGTCAAGGTGACTCTGGTGG
TCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTGGAGGGTGTGG
CTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTACGCTCCAGTC
AATAAGTACATGCCTTGGATCAAACAATATGTACCAGGATTGTGAAAAAA
GATTAATTTTCACCTGAAAATATACCATTAAtaaatattaaatttatttc
gt
Run BLAST on NCBI

transcript from alignment at scaffold_233:1007580..1011154+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053599 ID=TCONS_00053599|Name=TCONS_00053599|organism=Clytia hemisphaerica|type=transcript|length=3575bp|location=Sequence derived from alignment at scaffold_233:1007580..1011154+ (Clytia hemisphaerica)
ATTGAGGGAGCCTGAACaaaccttttgaaaaatgtttcatcaAATTGTAT
AATTActgttttcttcaattttccgTTTATTTCACTACAGAACGAAGATG
GGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTC
ATGTGAGTCTTTAATACTACGTTGGTAAGGCTTGAGCCCtgaaatttgtc
aatttttttcactatctcgtaaagtaaaagcttttatATAATCTAAGCAT
GGCAAAGGATAGCCCTcgacccaataagcataaatatggtttAATACCAG
GGATGgtcaaagtaaatttttcagaaatttaaagcccTGACCCGGAAATT
TGAGTTACTTATTGGATTACTAAGGCTTTGCTTTTTACTCTACCTCATTA
GAATACATAATGGACCCCCCCCCAATAATACTGTGAGGACAAAATGTGCA
AAAGCTAGAATTAAAATGTTTTATCCTAGTATTCACTTTGGTTGAACTTT
TTCTTCCTTGAATGTATCAGATGGAGCTGACaaatgtgaaaatgaaagtt
gggATTTGACATGCTGGAGAAAGAAGAAGTTTACTCAGAAGGATATGTGC
TACAAAGCGGAGGGTAAACAGAAATGCGCTGAAACATGTAATCTTTGTAA
CGAGAAGTGCGGTATCTCCAAAGTTTCACAAAGTCGAATTGTCAACGGTG
TCGAAGCGAAAGAAGGAGCTTGGCCATGGATCGCCTCTCTCCAACTTCAA
GGAAAACATTTCTGTGGAGCTACCATTTTGACACCAAAATGGGTGAGTCG
TCTGAATCCCTTGGAAATGCCGAAGTTGACAATAAGTGTGATCTTTCATT
GAAATCTTCGTTCAATACAAGCTGCCCCATTAACAATCCATGTATAAGGC
TTAGCTACACAGCGAACTCTTTAATTTCTATTATTTAAGGAGTGATTGGT
CCAGCAATAGAATAGCCCCTTAAGATTTTAGAAAACTTTATATTTCAGGT
TCTAGCAGCCAGTCATTGTGTTCAACCACTGAAGAACATGCCAAATGCTA
TGGACGCGTTTACCGTGACACTGGGAGCTCACGATATCACCAAATCGGAA
CCTAAACAACAAACAATCAAAGTGAAACGTTTCATCATACACAAGGATTA
TGATACACGTGTGATGATGGCAGATATCGCTCTTCTGGAGCTGGAGACAC
CAGCAATGTTCAATGATCGTGTTGTGACACCCTGTCTCCCCAATGAAGGA
AGTTATCCACCAAAAGATTTGAAATGTGTGGTTGCAGGTAATGGTGCACC
TAAAGCTTCGAGGCCGAGAATCTGAGAATATCCTTAGAACATTAAGGCTA
TGCGAGCTCAAAaagatattgaaaagaaaaaactatttaaaaaactaatt
ttaggcttaattaaaacccaaaaatgttttgaacttttaaatggttttat
ataaaaattagaCATCTAGGTACGTCAATCAGTTAGCTGGTGGTCTTATA
CAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAGAATTTCCctctaa
aatgataaaatagtCCCGGGCCCCGTTCATTTCCTCGTTACATACAACAG
GTGTACGCTCAGAAGTCACTGATACAGGaaccattttgagaaaaaaaagc
tttagattatttttcttttactaTAGGATGGGGCATTACCAAATTCCCAA
GCACCGATACCGCATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGT
ACACCACATCAAGGTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAA
CGGATTCACCAAAACATCTGAGGGTAGGAGATATATTTAGTCTTAACTTT
TGTCAAACATTGAAGACCGACTCaaacttttaaaagtgtttttcaGATAT
CTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCCGGGGAGATTTTAA
CCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACTTTGAGTATCCTGA
CTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGTAATCTCACCAATT
TCAAACAGACCATTCTCCATTTGGATTACACAAACAGGGTGTTTCTTAGA
GtgttatttttccttttcaggTAAGCAACAACCAAATGCATGTCAAGGTG
ACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTG
GAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTA
CGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAATATGTACCAGGAT
TGTGAAAAAAGATTAATTTTCACCTGAAAATATACCATTAAtaaatatta
aatttatttcgtcaaaattttttccaCGTGTTTTTACTCACATTTCGATA
TATTATCCtatttactcttaggtgccaaataaacggccccccccgcttgt
tagtttttggtttttttccaacccccccggacgttattaggacccccccg
tttataaatttttgaaaaaattcccagctcccaaaaggaaagtttcttgt
tttactctaTAAAGCCTAAATTTggtctattttgaccctttttagggttt
NAAAAAACTAATTTTAGGCTTAATTAAAACCCAAAAatgttttgaacttt
taaatggttttatataaaaattagaCATCTAGGTACGTCAATCTGTTAGC
TGGTGGTCTTATACAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAG
AATTTCCCTCTAAAATGATAAACTAGTCCCGGGCCCCGTTCATTTCCTCG
TTACAGACAACAGGTGTACACTCAGAAGTCACTGATACAGCAaacaattt
tgagaaaaaaaagcttccaatatttttcttttactaTAGGATGGGGCATT
ACCAAATTCCCAAGCTCCAATACCGCATCAAAACTTCAACAGACCATCCT
CCCAGTGGTTGGTACACCACATCAAGGTTGCCATAACAACAAAGAAGTTG
TCTGTGTTGGTAACGGATTCACCAAAACATCTGAGGGTAGGAGATATATT
TAGTCTTAACTTTTGTCAAACATTGAAGACCGACTCaaacttttaaaagt
gtttttcaGATATCTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCC
GGGGAGATTTTAACCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACT
TTGAGTATCCTGACTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGT
AATCTCACCAATTTCAAACAGACCATTCTCCATTTGGATTACACAAACAG
GGTGTTTCTTAGAGtgttatttttccttttcaggTAAGCAACAACCAAAT
GCATGTCAAGGTGACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGG
TCAATGGAGATTGGAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAAT
ACTATACAGCTTACGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAA
TATGTACCAGGATTGTGAAAAAAGATTAATTTTCACCTGAAAATATACCA
TTAAtaaatattaaatttatttcgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033820XLOC_033820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053599-exon-scaffold_233-1491911889:1007580..1007731TCONS_00053599-exon-scaffold_233-1491911889:1007580..1007731Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1007580..1007731TCONS_00053599-exon-scaffold_233-1510915933:1007580..1007731Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1007580..1007731TCONS_00053599-exon-scaffold_233-1575043694:1007580..1007731Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1491911889:1008100..1008371TCONS_00053599-exon-scaffold_233-1491911889:1008100..1008371Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1008100..1008371TCONS_00053599-exon-scaffold_233-1510915933:1008100..1008371Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1008100..1008371TCONS_00053599-exon-scaffold_233-1575043694:1008100..1008371Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1491911889:1008578..1008866TCONS_00053599-exon-scaffold_233-1491911889:1008578..1008866Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1008578..1008866TCONS_00053599-exon-scaffold_233-1510915933:1008578..1008866Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1008578..1008866TCONS_00053599-exon-scaffold_233-1575043694:1008578..1008866Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1491911889:1009256..1009402TCONS_00053599-exon-scaffold_233-1491911889:1009256..1009402Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1009256..1009402TCONS_00053599-exon-scaffold_233-1510915933:1009256..1009402Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1009256..1009402TCONS_00053599-exon-scaffold_233-1575043694:1009256..1009402Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1491911889:1009700..1009726TCONS_00053599-exon-scaffold_233-1491911889:1009700..1009726Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1009700..1009726TCONS_00053599-exon-scaffold_233-1510915933:1009700..1009726Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1009700..1009726TCONS_00053599-exon-scaffold_233-1575043694:1009700..1009726Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1491911889:1010940..1011154TCONS_00053599-exon-scaffold_233-1491911889:1010940..1011154Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1510915933:1010940..1011154TCONS_00053599-exon-scaffold_233-1510915933:1010940..1011154Clytia hemisphaericaexon
TCONS_00053599-exon-scaffold_233-1575043694:1010940..1011154TCONS_00053599-exon-scaffold_233-1575043694:1010940..1011154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1007580..1011154 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132429	0.219537	0.101211	0.146696	0.44647	0.235204	0.493749	0.517306	0	0.433117	1.14043	0.30428	86.7104	77.8225	22.2086	48.1071	5.86543	7.67278	316.853	273.338	38.2839	41.4628	8.59417	10.5604	15.4081	17.5375	0.762663	0.600761	0.73493	0.763753
Blast
[Close]
BLAST of TCONS_00053599 vs. Swiss-Prot (Human)
Match: PRS33 (Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.617e-39
Identity = 92/263 (34.98%), Postives = 132/263 (50.19%), Query Frame = 2 
Query:  281 NEKCGISKVSQSRIVNGVEAKEGAWPWIASLQLQGKHFCGATILTPKWVLAASHCVQPLKNMPNAMDAFTVTLGAHDITKSEPKQQTIKVKRFIIHKDYDTRVMMADIALLELETPAMFNDRVVTPCLPNEGSYPPKDLKCVVAGWGITKFPSTDTAS--KLQQTILPVV------GTPHQGCH--NNKEVVCVGNGFTKTSEGKQQPNACQGDSGGPLVCQLPSGQWRLEGVASYVH--TYCKYYTAYAPVNKYMPWIKQYV 1033
            +  CG  ++S SRIV G + ++G WPW AS+Q +G H CG +++ P+WVL A+HC  P + +P     + V LGA  +  + P+  ++ V+R ++  DY       D+ALL+L  P   + RV   CLP  G+ PP    C V GWG  + P         LQ   +P++      G  H G      + +V  G+      +G +  +ACQGDSGGPL C L SG W L GV S+            Y  V  Y PWI+  V
Sbjct:   25 SAACGQPRMS-SRIVGGRDGRDGEWPWQASIQHRGAHVCGGSLIAPQWVLTAAHCF-PRRALPA---EYRVRLGALRLGSTSPRTLSVPVRRVLLPPDYSEDGARGDLALLQLRRPVPLSARVQPVCLPVPGARPPPGTPCRVTGWGSLR-PGVPLPEWRPLQGVRVPLLDSRTCDGLYHVGADVPQAERIVLPGSLCAGYPQGHK--DACQGDSGGPLTC-LQSGSWVLVGVVSWGKGCALPNRPGVYTSVATYSPWIQARV 278
The following BLAST results are available for this feature:
BLAST of TCONS_00053599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS331.617e-3934.98Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 ... [more]
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