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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053535 ID=TCONS_00053535|Name=TCONS_00053535|organism=Clytia hemisphaerica|type=transcript|length=3930bpRun BLAST on NCBI protein sequence of TCONS_00053535-protein >TCONS_00053535-protein ID=TCONS_00053535-protein|Name=TCONS_00053535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp SIEQLPSPEFFRGKILIKGKKLPEHDHVDGVRGLGTNDGEDDYVSEDDDERun BLAST on NCBI transcript from alignment at scaffold_233:65800..83064+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053535 ID=TCONS_00053535|Name=TCONS_00053535|organism=Clytia hemisphaerica|type=transcript|length=17265bp|location=Sequence derived from alignment at scaffold_233:65800..83064+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_233:65800..83064+ >TCONS_00053535 ID=TCONS_00053535|Name=TCONS_00053535|organism=Clytia hemisphaerica|type=CDS|length=16164bp|location=Sequence derived from alignment at scaffold_233:65800..83064+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053535 vs. Swiss-Prot (Human)
Match: PLCL1 (Inactive phospholipase C-like protein 1 OS=Homo sapiens GN=PLCL1 PE=1 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 4.332e-54 Identity = 106/291 (36.43%), Postives = 160/291 (54.98%), Query Frame = 1
Query: 550 HELSDLVNYIQAVHFHGFESASQGQQEPFKMSSIGERKFQAFAKSHGKEFSTYNKKFLTRTYPSGIRVDSSNYNPATAWAVGCQIVALNYQTPGEFMDLNDGFFKVNGASGYILKPEYLRDENINFDPEDENLDKIIQPMQVTFEIISGHFLPN---KVSGKDILDPYVVLNVYGIEQDVTTQFTTRTVSNNGFNPVFNATLQFILKAPELACFRLTVYDKDFGKDDLVAQCVYPFKSIRQGFRRIKLDTRVGESVNEACILANIKLVXXXXXXXXXQMSVICRFILSVHE 1413
ELSDLV+ ++V + FE S Q ++M S E + A + ++F YNKKFL+R YPS +R+DSSN NP W GCQIVA+N+QTPG MDL+ G+F NG GY+L+P +RDE F + + + P+ + +IISG P + D++DPYV + ++GI D + Q T+TV N NP+F+ T +F + PELA R V D D+ D+ + Q PF+ ++ G+R + L + VG+ + + +I + + S+ R V E
Sbjct: 583 RELSDLVSICKSVQYRDFE-LSMKSQNYWEMCSFSETEASRIANEYPEDFVNYNKKFLSRIYPSAMRIDSSNLNPQDFWNCGCQIVAMNFQTPGPMMDLHTGWFLQNGGCGYVLRPSIMRDEVSYFSANTKGILPGVSPLALHIKIISGQNFPKPKGACAKGDVIDPYVCIEIHGIPADCSEQ-RTKTVQQNSDNPIFDETFEFQVNLPELAMIRFVVLDDDYIGDEFIGQYTIPFECLQPGYRHVPLRSFVGDIMEHVTLFVHIAITNRSGGGKAQKRSLSVRMGKKVRE 871 The following BLAST results are available for this feature:
BLAST of TCONS_00053535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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