|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053533 ID=TCONS_00053533|Name=TCONS_00053533|organism=Clytia hemisphaerica|type=transcript|length=558bp
AGCAAATCCAATCTTAGCAGCCTAGTAAATAAGGAACTGAtggataagga
actttgaggctgaaattctcttgAAAAATAAAGGAACTCCATGGctcgga
gccaagttaaggttccttatacaacaaaaaataaagcagtcgcttcattt
ttcCTGTTTTACATAATTTGCTGCTTCaacattttacttttttaacaaaa
ataaacgTTTAGTACACTTTGTTTCAAGTTTCAACAAGGCGACTAACTGG
TGCTATTACAGATTTTTGTATTATGAAAAGGGAGCATGGCTGACATTGGG
GAAGTTCATGGCCATGTTCCATCTTGGTAACAATACTCCAGAATTTCAAC
GAGGATGGCAAAGTATCTTCAATCacgaaaaacaaatctttttaaTCTAA
AGACAttgcttttaaaatctttaacaaaGGTTGAGGAACTGGATATCAAG
GAGAACAATTCAACTAGCCTCTTGAAGAAATATGTATATAAGGAATGGAA
TGTTCCAGAACACTTGCAAATGTTAATGCACAATGGACAAGAAATTGGAC
GACTTGGT Run BLAST on NCBI transcript from alignment at scaffold_233:53795..55106+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053533 ID=TCONS_00053533|Name=TCONS_00053533|organism=Clytia hemisphaerica|type=transcript|length=1312bp|location=Sequence derived from alignment at scaffold_233:53795..55106+ (Clytia hemisphaerica)
AGCAAATCCAATCTTAGCAGCCTAGTAAATAAGGAACTGAtggataagga
actttgaggctgaaattctcttgAAAAATAAAGGAACTCCATGGctcgga
gccaagttaaggttccttatacaacaaaaaataaagcagtcgcttcattt
ttcCTGTTTTACATAATTTGCTGCTTCaacattttacttttttaacaaaa
ataaacgTTTAGTACACTTTGTTTCAAGTTTCAACAAGGCGACTAACTGG
TGCTATTACAGATTTTTGTATTATGAAAAGGGAGCATGGCTGACATTGGG
GAAGTTCATGGCCATGTTCCATCTTGGTAACAATACTCCAGAATTTCAAC
GAGGATGGCAAAGTATCTTCAATCacgaaaaacaaatctttttaaTCTAA
AGACAttgcttttaaaatctttaacaaaGGTAAGTTCATTCGTCATATTT
GTGCACGATGTGATAAAAAATTCATCTAGTTATTCAACTTTatccggggg
agggggtactagggttgtaAGCTGACGGGagtgtgccgcccgactttcga
ccatCTTGCTGCCCTTAGTGGGactaaaattttgtgaattattgggacta
atttgaccaaagtTTTTAGGGACAAAAACTTccttttttccgacccttaa
tgTGACTTTGGAAGTCATAAAAAATGTACCCTTAaattaagggcggcaca
tacccgtaccctccatttgcctaagccccccccccccccccccggggggg
ggggggcttatcGCTTGTTTTACCCTTGTCATTATTTTGGTACCAGGTGG
TGAGATTCTTTCATACAGTTGACTTGTTCAATCTTCAAGGGGACCCATAA
GTATTTGAATTAGGGAAAGTATTTTATAAATTCTCCAACTGAGATTAGAA
GACCAATGCTCTTCTTCAAATTATAGacaaaaatattcgaattatgGTGA
TCCGAATGAGAGGGGTTTGgctgttcgaattatagaaagattatATTGTG
TTTTTATATAGAAatactttggaccaatagttaTTTGAATTAAGGAGAGT
ATTTAATAAATTCTCCTACTGAGATTAGAAGACCGATGCTCTTCTTCGAT
ATGGTGGTCTGAATGAGAGGGGTTCGACtgctcgaattatagagagattt
attttgttttcgtGTAAAAATACTTTATACCAGGTTGAGGAACTGGATAT
CAAGGAGAACAATTCAACTAGCCTCTTGAAGAAATATGTATATAAGGAAT
GGAATGTTCCAGAACACTTGCAAATGTTAATGCACAATGGACAAGAAATT
GGACGACTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053533-exon-scaffold_233-1491911889:53795..54223 | TCONS_00053533-exon-scaffold_233-1491911889:53795..54223 | Clytia hemisphaerica | exon |
| TCONS_00053533-exon-scaffold_233-1510915933:53795..54223 | TCONS_00053533-exon-scaffold_233-1510915933:53795..54223 | Clytia hemisphaerica | exon |
| TCONS_00053533-exon-scaffold_233-1575043694:53795..54223 | TCONS_00053533-exon-scaffold_233-1575043694:53795..54223 | Clytia hemisphaerica | exon |
| TCONS_00053533-exon-scaffold_233-1491911889:54978..55106 | TCONS_00053533-exon-scaffold_233-1491911889:54978..55106 | Clytia hemisphaerica | exon |
| TCONS_00053533-exon-scaffold_233-1510915933:54978..55106 | TCONS_00053533-exon-scaffold_233-1510915933:54978..55106 | Clytia hemisphaerica | exon |
| TCONS_00053533-exon-scaffold_233-1575043694:54978..55106 | TCONS_00053533-exon-scaffold_233-1575043694:54978..55106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:53795..55106 + |
Blast
The following BLAST results are available for this feature:
|
