TCONS_00053529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053529
Unique NameTCONS_00053529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053529 ID=TCONS_00053529|Name=TCONS_00053529|organism=Clytia hemisphaerica|type=transcript|length=761bp
TAAAGGAGCCACTTTCAAAATCCCATTCTCCAAGGTAACCAGCATCACAC
ACGGGACCAGTTTACCAAAAGAAGACATCAGGTCGAACGCTCTTCCTACA
CGTCAATTCGTTGTGGAGTATCAGTTGGAAAATAGTAAAGGTGAAAACGT
CAAATCGAGGCTACATTTCACTATGGAAACAAAGAAAGCAGCAAAGGACT
GGGCTGAGGGTTTACAATACCTACAAATGTACATGGGGTCTGTTCAAATC
GAGAATTCGTTACGCCCAGCATGGCTACGTAACGCTTTTGATAAATTTGA
CCACGATAACAATGGTGCACTCACACTCACCGAGATAAAAAATCTACTCA
CTTATTGTAATGTCAAAATTGACGAGAGCAAAGCTGAGGAAACTTTTAAG
AAACACAGTAACGAAAGTTTCGGCAGACTTCCACCAATGAAGTTCTCAGA
ATTCTTTTATGAACTTGTATCACTCAGAAGACAAAGCTTTATATTTGAAA
GATATTTGACGGACAATAAAAAGACATGGAACACGCAAAACATATACGAT
TTTCTTAAGAACGAACAAAAGATCGAGAATCCAGACCCTTTAGACTGTGG
ATACATTATGAATAAATATGGAATCAAAAATTCAGAACAAGAAGACTCGA
AAGCTGAACTTGATCTTATAGGGTAATACGCGAAATGTGATTCACAGGAC
CAATTTGTAAAATCATTAGCGAAAGACGTTGTAAAAAAACAAGATTATTA
CTATCACGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_233:26319..38538+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053529 ID=TCONS_00053529|Name=TCONS_00053529|organism=Clytia hemisphaerica|type=transcript|length=12220bp|location=Sequence derived from alignment at scaffold_233:26319..38538+ (Clytia hemisphaerica)
TAAAGGAGCCACTTTCAAAAGTAAGTCTAGGTCACCACCAGTACTTCATC
CCCATATCCCTATATTACTTTCTGAGTGAACTTTGTTAACATAGTAACTC
TGATGTTGCTAAATGAAGCTTAGTTGGTTGTTTGAGCAGATCCTACTGTG
TTATGACTGATGTTCAATTTCGGCCACAAATCACTGTCACAAAATCTACC
AACGGTGATCATATATTTgtgtaaaattgacttaaatgaCAGAAGCTTTT
CCATGCTNAATCTATCAACGGTGATCACATATTTgtgtaaaattgactta
aatgaCAGAAGCTTTTCCGCATGGAAATCTTCACTAACGGTAAACTTTGG
AATTCTTCTCTTTAGTCCCATTCTCCAAGGTAACCAGCATCACACACGGG
ACCAGTTTACCAAAAGAAGACATCAGGTCGAACGCTCTTCCTACACGTCA
ATTCGTTGTGGAGTATCAGTTGGAAAATAGTAAAGGTGAAAACGTCAAAT
CGAGGCTACATTTCACTATGGAAACAAAGAAAGCAGCAAAGGACTGGGCT
GAGGGTTTACAATACCTACAAATGTACATGGGGTGTAAGTATatctttca
atttcttctttttaacaTCTTATTGTAGGCgcacacgcttttttttataa
gaatatactttttataagaatatttatgatgaaattggccaaaaaattaa
aaatatggtATTCAACTAAACctaagaatttcatttttagaccATTAAAT
TGGCAAATATTACCAAGCAATGCTAAAAGGTTCAACAAAAATGCTAATTT
GTTGCCCGAGGTATGCTAGATTTTGGCTTGAATTGAAtccaaacctaaga
ataccttaagaatatttcaggataattttcctcaaaaattcaagaatata
catcatgaaatgaaaaaacaccgttcttataaaaataaaaacgtaTATAG
ACCtttacgtcacgagcaacgcttacctcgttttcaaaatattgctattg
tAGTTAATGCCCAGAGGAGTTCATAAAAAGTCACTCTATTTAAAATTTAA
CACTTGAAGACTCAAGGAATTTAATCACCttgtaatggtttcaaaacgag
gcagtcgttgctCTCCAAATTATTTTATGAAAAGACGTATTAGTGTAGTG
TTTATCGTTCTATACTACCTCCGAGAAGGTCAGGGTTTGATTGCTGCTCG
GTGCTACTTTTCGATTtacaagtgaatgtaccttcgcccgggtcaataTA
TATCATTTGAGGGGAATTAGGTATCACATTCTGATATTAGAGTATGCGGA
GGTATGCAAGACATACACGAGGTCGTGACGCTGTTCACATGAATGGTCCA
CGCGTGGTACATGCTAGCGCCTTACCAGAAAtcgatttcttttctttttt
atgctttttaCCTGCCCTCGGAGAAAGTTAGAAAGGCCACCCTTACCATT
GTGCATTGACACTTTCTtttcatagtgtgcagaggggtctaccccccccc
atttttatttcaCCCCCCCcctatttgaaaacattttcgaaCCTGCGCTA
TTGACAAGAGCAGTCCACCAGtcattcaaaaccaaaaacattgaaaaatc
taaatcaatataaatatGACTGATATTTTGATCAAAAGTTGttatccccc
ctatttttacttgacccccccccctaaaatcttaaacccccatttttttt
cggaaaacctCCTACCCCCGTATAAAGCATATTTGGAAAAGTTGGATCCC
CTTTAAAAGGGGTTCACACTACATGCTTATACTTTGATTTCCCCTTTCAT
TCAACAGAGGTTCAATGTCACTTTAATGAATTCAAGATTCGGGAAATTTT
TGTATTGCGCGAGATCGACTTTgtgaatacactcttctcgagatgcataa
atttattgttgtcctcgttttcaaacagatttcattgctatacaATTata
tattcacaatgataattgtgttggttacacctcatgagacattttgaatt
tcaagtacttttgttttagagttaatgtttgccttttgggaattcaaatt
ggtttaaatgtataatttcatagcaatgaaatctgtttgaaaacgaggac
agcaataaatttatgcatctcgagaagagtgtattgtgCTTAATTCAAAA
Tgttagtttgagtaaagaaaacaattcaagttaatttcatactcaaagtt
tcatgccatccaggatggcaatcttcagtgaaataattcaaaatattcag
atgagatggagtttttataagatactttaatacttggtcatttgaagtaa
taaaaatgacgcgttctttagaaaaagtaataagattgttttattacagg
ttaatgaccaaccaaatcaattAAAAGCTTCTAAAAACTCCACCTCGTcc
tcaaaattttttatggaaaGAAAGAGTTTGTCAGAACGTTCCGACGGAtt
gatttttttcgaattagtTCTATTGCTTATTCGCGTTTGTTTCTgtaaaa
gtgaaattttattgttgtgGATAAAATATCCCACCATACCATAAAAATAT
CACTTGTTTCTCTTTACAGCTGTTCAAATCGAGAATTCGTTACGCCCAGC
ATGGCTACGTAACGCTTTTGATAAATTTGACCACGATAACAATGGTGCAC
TCACACTCACCGAGATAAAAAATCTACTCACTTATTGTAATGTCAAAATT
GACGAGAGCAAAGCTGAGGAAACTTTTAAGGTATGTTTGTTAAGTACATT
CTTTACCAGTAGCGTTCTGACAagctgacctttatataccctggaccaag
cttctcaattcccagccaagcaaaatctttgatcggagttttttaaaaag
tggtaccctaatggcgggcgacactactcgatagcggtgtaaatgcatcg
acaactccaatcaaagatggcgggtaTTGCTTGGTCTAGGGATATATAAC
GGTCAGTGGTTCTGACAAGCTGACAGGGAAAAGTTCGTTAAAAAATTCGA
CGAGTGACGTGGATCGAGATATTTGAGATGCTACATTTtctcatagtgtc
ctcccccacccccttttaaaagggggtgggggaatttttttttcagaaaa
taggaaaaggggggggggcaaaatggttttcaaaaatctagggggggggg
gaaaaaatgGCCCCAAAAAGGCTAGGGGGGAGAAAAAATGGCCCCAAAAA
GGCTAGGGGGGAGAAAAAATGGCCCCAAAAAGGCTAGGGGGGAGAAAAAA
TGGCCCCAAAAAGGCTAGGGGGGAGAAAAAATGGCCCCAAAAAGGCTAGG
GGGGAGAAAAAATGGCCCCAAAAAGGCTAGGGGGGAGAAAAAATGGCCCC
AAAAAGGCTAGGGGGGAGAAAAAATCTGGggacattatttttttctactg
tggaaaaatattttttctactcTCTGTAGCTAACTTTGTCTAAACTAACA
TCTAAAAAATATACGCTTTGTAAATAAATTGATTAGAAGTTATCTTTCAC
TAGCAgtttatttttaacttttcatttcactctgtggaaacttttttttc
aatttttcattgtatATATAACAGAGATAACGTGAATAGAAGCAtcaatt
tggtatttttagacgtttttgatatacagtttttgaaaaaaatctgaaaa
atctacaaaagcgccaatttttataaaaactagtctttttttaaacaaaa
attacttttaaaggtgtttttattaatcattaatgtcataaaactcctta
aataagtcaatttgtaagtgattttctaattgattgcataaatttaatac
ctcttttttacgtgttttttacactttccgaaaagtgaattttgtcttta
aaagctcataagtagagaacaagttggtcaaatttaaaaagtgatagctc
aaatcttaagttaggatatctaccttctaaatatcaaaactccaagcact
ttgggacatttgttcgacctcaagatgtcgggaaacgtctgaactttttc
gtgggtcacccggtatatctTCTACTTTTCGGATGAAATTTCGTTATAaa
ttctgtctcaaaataatttgcagcggagacaaaaaaggctacCTTATCgc
ccaaaacttagtcggccttaattattagtcggccctgaTTTTAGACAACT
CGTCAAaatagggccgactaataattaagaccgactaaagtcaccaagcc
aaaatttagtcacttagggccgactaagttttggccaataaggtataact
tttgatagacatcGAATTAGATAggggttttgtgcttgttgaaaagacag
ACAGAAGTGGAATATATCAAAAAAccaaaatcaacttcttcaataaatgt
gctataattatcattattttcacacgagtgattctttgatcttagaacat
catcaatgtgaaaataactttcaaaaaacttttttcaatcgaAAGATATA
GTCGAAAGTTTTATCTCTAATTGGCTTCAAAAACcaccaaaaacaacaaa
aaagagcccttttaagtcaaccagggcaaagttttaagctgtattttttg
actgaataaaaaagattttttgagttttttttttcgcatttatgacgttc
taagattgaagaatctcTGATATAGAAATGATgatcatagcattattcta
tAAGAAGttgacttttttcttcttcgtttttcatctttatttttccattt
ttttaaatattttcttttttgacgatGTTCCACCCTGGATTATCTTttaa
acgagcacaaaaccgttttctaattcgaattctatcaaaagttacagcct
tttttgtctccgctgcaaattatattgagacagacttttaaTACTGTGCT
CGATTTGATTTTGGTTTTGTTTGGCAATAAAAGAGGCGGTTGATacaggc
acgacgcaacgggtacggcaggNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNaaatacccgaagttttcctcttcgtcggtcaa
atcgctataaaatcgcttaaatttcctcattcaccgtaccagatataaaa
agcttccgtcgtgcctgggTTGTAGTTGATGCTAACTAGATCATGTTTCC
AGTTACCATATTTACTTTATAAAAGTAATTTagcattaatttttgaaaaa
aatcaaatttttcttcactTCTTAGAAACACAGTAACGAAAGTTTCGGCA
GACTTCCACCAATGAAGTTCTCAGAATTCTTTTATGAACTTGTATCACTC
AGAAGACAAAGCTTTATATTTGAAAGGTAAATCCATTCGGTCtaatatac
tttaatcgtagaaattttagcgagacaaattttagtgttttagcgagttt
tccctattttcgctaaaataaatctcgctaaaacatgccgaatcgacaga
tcgctaaaatttatccgcgcgaaatttttggttatattgccttgatgcat
ttttatcaataggaagggtttcagtgcaaagaaatgctagaaaacgaatt
aaGTCATTAATGTAATatatcgtgattcgctaaaataaatccaaaaaaaa
tcaagattttcctgactcgctaatatacgcttaaattagtctcgctaaaa
tttctacgattaaatatgtctaatcttataaaaaatcgtcCATATTTCCA
GCGCCACTCGCCAAGTTTTGGAAGACTGTGTTAACGTTTgccttgaaaac
gaaagtgattggGTTCTCAAGTTGATGAGCATTTGCCGAGTGGTCAAGGC
GTCAGCGCCGGAAACCAGGCTTTTTGGTTCGAATCACGGCTCCTTCCAAT
GTCCGGTTCTGTTCATAGATATCGGAGCCGGCTGGCGGTGGACCATGGAA
AAATAGTCGATAGATcttctaaaagtcctagattactgggctgtCCACCT
TTTAAATCGACTTCTTCCATTTTTTGATTACGTTTTTGATTGACAATAGA
TTTTCGTTCATTTGTTTAAATTCAACCAGTGCTTTTTTATAGCCTCATTT
GTTATCCATCAAAGTTtggataaaaaatttcaaagtggacATCCAACTGA
TTCTACTGGTTATTTATATACAGTGGTAACATATTTATAGTGGCTGGCCA
TggaataattttcaaacttttaggcagtttgaaaattttctcaccCAGGG
GCCACTTTGGGGGAAggggtagactggagtcgtttataatgcgtgtaata
ctaataataccaatactaataataatacgggatttagtttgtataaacga
ctggaagaatccggtgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGAGTTgatgcacaaaggtttctagac
gactaaaattgttccattcattactttttgctttatttctactatgtata
aattagtcgtctagcttgctagactagggAACGGGACATGAACGGTAAAA
GTAACAAGAACAAGAACGAGAaaaaagaacaggataagaaatAAAACAAC
ACCGTTTGATTAGTCGAGAAAGTGCTTTTCAATTGAATTTCTGAACTGGA
ATATCGATTTGGTAGTTTTGATTTCAGTTGGGAGGTTATTCCATAATAAA
GAGCCAGAATTAATAAATGTTTGATCAGTGAAATGAGTCAAGAaaagtta
tggagtaaggtttataggACATCGTTGACTGAAGGGACGACAAAACTTGA
TTGAGTAATTGTACATTGTAGtatatttttcatctttcttcGATCTGCAG
ATATTTGACGGACAATAAAAAGACATGGAACACGCAAAACATATACGATT
TTCTTAAGAACGAACAAAAGGTATCTATCTCAGAGACATTTTCTGATTTt
gttattctcaacttcagttgagctggAACCTGAGAATCTGTGTCTGTATG
TTTGTCTGTCACCTCAAAACTTTGGGGACCAAAAATTGTCTGGTTCGGAA
ATTTTGCACACGTTTGTTCCTTGGGTATGGGgatgtttattttcattttt
tcaaaattttgatttttagggacGCACTTGTgccttgggtaaatatctgg
gggtgttttttttttcatttttctaaaattttcatttaaagggtgtgccc
agccggcacacaacgtcaaaacaacgtccatttgacatacataacgtcca
aataacgttatttgaacgttaaaacaacgttgtgtgctagctgggtgacc
acgagtttttcgccaaaacgaggatAAAGCTTTTGTGGCAAGCTGGAAAC
TTCAAAAGTGGTCCGATTTGCCTGAAATTTGGCATACTTGTTCCTTGGCT
AAattctgggggtgttttttttcttcattttttcaaaattttcatttaat
gGGCGTGAtcacgagtttttcaccaaaacgaggctagaaCTTTTGTGAAA
GTGAGGCCAAAGGTCAGCTAGGTTATGTCCTTGTGTCCTTTTTTCAAATG
TGTGAACTTATCACTAAAGAGCTTGGTTTTAGTTTACAAAGTATCTGGCA
ATTTGGTGTTTTTAGAGTCTGCGAAGTcttggaatgttcttaacttgttc
ttgatattttgaccatcgaaacctaatgttcttatacagtttgttctcAT
TAAAAACCATGCATTGAATGATTCTTCATCCTGTTCTTCTTCGTTTAGAT
CGAGAATCCAGACCCTTTAGACTGTGGATACATTATGAATAAATATGGAA
TCAAAAATTCAGAACAAGAAGACTCGAAAGCTGAACTTGATCTTATAGGT
ATGTTCCGattatttgattgattgataaaacCAGTTTGTACTTAGTTTGT
ACTTAGTTTGTACTTAGTTTAAATCACTACAAAACTACAGGTAGTATAAA
AGCCAGTCTCCACTTTCACGTGAAATGggtgacagtttttttcttaacct
ttttttgcctggagaaaagattacgtcataaaaaagtttcgcgcgaacaa
aaaaatttgaaggaagttcattttgaccaatggaaattttgcttcaattt
tcaaccgaccaatgaccttacaaaaaagtcaaaatgtttCCGCTCATGTC
gcacgaaagtggagaccggtctTAAGGAGCATGAatggggacgagatgga
gtttttacaaggtcttatttgatttggttggtcgttaaccagtgataaaa
caattttgttactttttctaaagaacgcgtcatttttNNNNNNNNNNNNN
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Ngcaaaagtcacgaaaaaacgtcgagtaaacaaacttttgattggtggag
gcatgcaaagattacctcatactctggacattttgaaaaatatgcttgta
tatgaaatatttcagccaatcagagactttTTCGGCGTTTTTCGTGACTC
TTTTACATGAATCCGCTAATAGGAGATACGTGTATTTCCATACAGGCGGG
TAGACGAAGCTTTTTAAGGAGTATGAATCCGTTTGTGGATGCTAGCAGCC
TAGTTTGTACTGAGCTTCTATTTTATTGAGGGTAATACGCGAAATGTGAT
TCACAGGACCAATTTGTAAAATCATTAGCGAAAGACGTTGTAAAAAAACA
AGATTATTACTATCACGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033790XLOC_033790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053529-exon-scaffold_233-1491911889:26319..26338TCONS_00053529-exon-scaffold_233-1491911889:26319..26338Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:26319..26338TCONS_00053529-exon-scaffold_233-1510915933:26319..26338Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:26319..26338TCONS_00053529-exon-scaffold_233-1575043694:26319..26338Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:26684..26902TCONS_00053529-exon-scaffold_233-1491911889:26684..26902Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:26684..26902TCONS_00053529-exon-scaffold_233-1510915933:26684..26902Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:26684..26902TCONS_00053529-exon-scaffold_233-1575043694:26684..26902Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:28888..29048TCONS_00053529-exon-scaffold_233-1491911889:28888..29048Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:28888..29048TCONS_00053529-exon-scaffold_233-1510915933:28888..29048Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:28888..29048TCONS_00053529-exon-scaffold_233-1575043694:28888..29048Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:31944..32044TCONS_00053529-exon-scaffold_233-1491911889:31944..32044Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:31944..32044TCONS_00053529-exon-scaffold_233-1510915933:31944..32044Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:31944..32044TCONS_00053529-exon-scaffold_233-1575043694:31944..32044Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:36019..36088TCONS_00053529-exon-scaffold_233-1491911889:36019..36088Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:36019..36088TCONS_00053529-exon-scaffold_233-1510915933:36019..36088Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:36019..36088TCONS_00053529-exon-scaffold_233-1575043694:36019..36088Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:36917..37016TCONS_00053529-exon-scaffold_233-1491911889:36917..37016Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:36917..37016TCONS_00053529-exon-scaffold_233-1510915933:36917..37016Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:36917..37016TCONS_00053529-exon-scaffold_233-1575043694:36917..37016Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1491911889:38449..38538TCONS_00053529-exon-scaffold_233-1491911889:38449..38538Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1510915933:38449..38538TCONS_00053529-exon-scaffold_233-1510915933:38449..38538Clytia hemisphaericaexon
TCONS_00053529-exon-scaffold_233-1575043694:38449..38538TCONS_00053529-exon-scaffold_233-1575043694:38449..38538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:26319..38538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177426	0	0	0	0	2.05956e-08	0	0	0	0	0	6.18107e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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