TCONS_00053514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053514
Unique NameTCONS_00053514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053514 ID=TCONS_00053514|Name=TCONS_00053514|organism=Clytia hemisphaerica|type=transcript|length=593bp
AGGTGAAGCTAATTAAAGTATGATTGTGTAaatttcaggtttaaaaaaCT
GGTTGTAGGtttcttagatttttgaaaCACTTGCAGTGTTTACCATATCA
AAATCACCCAGCTTTTATTGcaactttctttaaaatgttgtcctttctat
tttcaaaaatgactttGTTGCAACATGTCTAAAATGTTGTCCAAGTTATT
ATTAAATCTGTTGAGCACAAGGTTGTcctataaacttttttttgagatAC
ACTACACAAACTTTTCTGTTTGTCACActtattatatataaaattctgac
attaacaaaaagaaagtatattCAACTTTCAAAGATTTCTCTCTCaattc
aatttatattttatttataaggATCTGAGGGCtctactaaaatctcagac
ataataaTGATTTTAAATTATCTTTTCATGGGGGAATAAAGTATGTGAAA
TTATGTACTTTATTTCGTATCAGTGCATTCCATGTATTATTATGattaat
tttaagaattttgacataaaaaccATTGTCTTggcctaaaaatattctaa
taGCATTTAAGTACTGGTTTTGCCTTTTAATAACTCTGTTTAA
Run BLAST on NCBI

transcript from alignment at scaffold_232:55135..55727

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053514 ID=TCONS_00053514|Name=TCONS_00053514|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at scaffold_232:55135..55727 (Clytia hemisphaerica)
TTAAACAGAGTTATTAAAAGGCAAAACCAGTACTTAAATGCtattagaat
atttttaggccAAGACAATggtttttatgtcaaaattcttaaaattaatC
ATAATAATACATGGAATGCACTGATACGAAATAAAGTACATAATTTCACA
TACTTTATTCCCCCATGAAAAGATAATTTAAAATCAttattatgtctgag
attttagtagaGCCCTCAGATccttataaataaaatataaattgaattGA
GAGAGAAATCTTTGAAAGTTGaatatactttctttttgttaatgtcagaa
ttttatatataataagTGTGACAAACAGAAAAGTTTGTGTAGTGTatctc
aaaaaaaagtttataggACAACCTTGTGCTCAACAGATTTAATAATAACT
TGGACAACATTTTAGACATGTTGCAACaaagtcatttttgaaaatagaaa
ggacaacattttaaagaaagttgCAATAAAAGCTGGGTGATTTTGATATG
GTAAACACTGCAAGTGtttcaaaaatctaagaaaCCTACAACCAGttttt
taaacctgaaattTACACAATCATACTTTAATTAGCTTCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033782XLOC_033782Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053514-exon-scaffold_232-1491911889:55135..55727TCONS_00053514-exon-scaffold_232-1491911889:55135..55727Clytia hemisphaericaexon
TCONS_00053514-exon-scaffold_232-1510915933:55135..55727TCONS_00053514-exon-scaffold_232-1510915933:55135..55727Clytia hemisphaericaexon
TCONS_00053514-exon-scaffold_232-1575043694:55135..55727TCONS_00053514-exon-scaffold_232-1575043694:55135..55727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_232supercontigscaffold_232:55135..55727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.124593	0	0	0	0.233566	0.0964363	0.842431	0.615312	0.368674	0.510495	0.367234	0.450399	0.20807	0.0710885	0.196425	0.102772	1.33992	1.17642	0.211865	0.192616	0	0	0.25337	0.270403	0.102546	0.208956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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