TCONS_00053495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053495
Unique NameTCONS_00053495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053495 ID=TCONS_00053495|Name=TCONS_00053495|organism=Clytia hemisphaerica|type=transcript|length=390bp
CATCATTCAAActtaatttcattcaaaaatcgTTATTCATTTTCGAAACT
CAGTAGTACTAAATTTTCTGTGAAATTGGAAATTATAAAAACGTATACcc
tttaaaatacaattttacaaCAACCCTTCTTCATAGATTGGTGTTCTTCC
ATAGTATTTGATATTTCTGCAATACTGTATTCGATCTTCAACATCCTCAT
CATGTTTCTTTAATATCCAATTCCAAAAAATAGATCCAAACGCATCCTCT
CATCTCCTACTTCtttgtcaaaatttggattACCTGATTCCTTTTCTTGA
AAATCTTGTTTCCGTGTTGTTCTCTGCGGAGCTGATGCACCAGAATCACA
TATTTTATTTATTCCTGAAACGAGAACCCTCcccagaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_231:355779..356168

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053495 ID=TCONS_00053495|Name=TCONS_00053495|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_231:355779..356168 (Clytia hemisphaerica)
ttttctgggGAGGGTTCTCGTTTCAGGAATAAATAAAATATGTGATTCTG
GTGCATCAGCTCCGCAGAGAACAACACGGAAACAAGATTTTCAAGAAAAG
GAATCAGGTaatccaaattttgacaaaGAAGTAGGAGATGAGAGGATGCG
TTTGGATCTATTTTTTGGAATTGGATATTAAAGAAACATGATGAGGATGT
TGAAGATCGAATACAGTATTGCAGAAATATCAAATACTATGGAAGAACAC
CAATCTATGAAGAAGGGTTGttgtaaaattgtattttaaaggGTATACGT
TTTTATAATTTCCAATTTCACAGAAAATTTAGTACTACTGAGTTTCGAAA
ATGAATAAcgatttttgaatgaaattaagTTTGAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033771XLOC_033771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053495-exon-scaffold_231-1491911889:355779..356168TCONS_00053495-exon-scaffold_231-1491911889:355779..356168Clytia hemisphaericaexon
TCONS_00053495-exon-scaffold_231-1510915933:355779..356168TCONS_00053495-exon-scaffold_231-1510915933:355779..356168Clytia hemisphaericaexon
TCONS_00053495-exon-scaffold_231-1575043694:355779..356168TCONS_00053495-exon-scaffold_231-1575043694:355779..356168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:355779..356168 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19114	0.221932	0.217126	0.79299	0.417754	2.01601	2.35921	0	0.409188	1.78726	1.04433	1.56432	2.0307	0.222601	1.31387	1.47144	1.05572	0	0	0.379026	0.277314	0.224741	0	1.05223	1.31473	0.268768	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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