TCONS_00053491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053491
Unique NameTCONS_00053491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053491 ID=TCONS_00053491|Name=TCONS_00053491|organism=Clytia hemisphaerica|type=transcript|length=645bp
GGCAAGTTCAACTTCTAGACTAGCCAGTTGAGTAGCATTTCCGACCATTT
GTTCTTCTGGAGAAGTCCTCTTTGACGAACAACTAGTTCCCTCTAACGAA
GATTTTTTTCCCGACGACCTTGTTGATTTCGTGATAGATTTAGCTTCAGA
TTCCTTAGCATAACGTATGGCAGAACTTTTAGTCAAGAAAATGTCGGTAT
CTACACTGGCCAAAAACGAATCTAATTCACGTGGTTCATTAATCAGTGGT
TTTAACTTTTCACATACAAAGAGCAATTCAGCAAAAGCCTTATCTAGACC
CATGATTTCATCATTAACAGAACTAGATGGCAAAGACTTCAACAACATTT
CATTAACATGATCACATCTTTTCATAATTTCAGCATCAAGCCTACACCTC
TATCTCTCaaaaagctcaaaatcataattttatCAGATCTTCTGGTCTTC
CGCTTAGTCATATTTCTATCCCAATCAGACTGACGAACCGCTTCATTTTC
CGATGGTTCAGACATAACTCCAAAACaagtttcaaacaaattttatcaaa
ttacgTTATTATCAAGCAGCTAGTCAAAATCTAGATTGGATTTTCAAGAC
TGAagtgaagtgattaacatccaatatttttctttattatatATG
Run BLAST on NCBI

protein sequence of TCONS_00053491-protein

>TCONS_00053491-protein ID=TCONS_00053491-protein|Name=TCONS_00053491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKRCDHVNEMLLKSLPSSSVNDEIMGLDKAFAELLFVCEKLKPLINEPRE
LDSFLASVDTDIFLTKSSAIRYAKESEAKSITKSTRSSGKKSSLEGTSCS
SKRTSPEEQMVGNATQLASLEVELA
Run BLAST on NCBI

transcript from alignment at scaffold_231:346457..347101

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053491 ID=TCONS_00053491|Name=TCONS_00053491|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at scaffold_231:346457..347101 (Clytia hemisphaerica)
CATatataataaagaaaaatattggatgttaatcacttcactTCAGTCTT
GAAAATCCAATCTAGATTTTGACTAGCTGCTTGATAATAAcgtaatttga
taaaatttgtttgaaacttGTTTTGGAGTTATGTCTGAACCATCGGAAAA
TGAAGCGGTTCGTCAGTCTGATTGGGATAGAAATATGACTAAGCGGAAGA
CCAGAAGATCTGataaaattatgattttgagctttttGAGAGATAGAGGT
GTAGGCTTGATGCTGAAATTATGAAAAGATGTGATCATGTTAATGAAATG
TTGTTGAAGTCTTTGCCATCTAGTTCTGTTAATGATGAAATCATGGGTCT
AGATAAGGCTTTTGCTGAATTGCTCTTTGTATGTGAAAAGTTAAAACCAC
TGATTAATGAACCACGTGAATTAGATTCGTTTTTGGCCAGTGTAGATACC
GACATTTTCTTGACTAAAAGTTCTGCCATACGTTATGCTAAGGAATCTGA
AGCTAAATCTATCACGAAATCAACAAGGTCGTCGGGAAAAAAATCTTCGT
TAGAGGGAACTAGTTGTTCGTCAAAGAGGACTTCTCCAGAAGAACAAATG
GTCGGAAATGCTACTCAACTGGCTAGTCTAGAAGTTGAACTTGCC

Coding sequence (CDS) from alignment at scaffold_231:346457..347101

>TCONS_00053491 ID=TCONS_00053491|Name=TCONS_00053491|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_231:346457..347101 (Clytia hemisphaerica)
ATGAAAAGATGTGATCATGTTAATGAAATGTTGTTGAAGTCTTTGCCATC
TAGTTCTGTTAATGATGAAATCATGGGTCTAGATAAGGCTTTTGCTGAAT
TGCTCTTTGTATGTGAAAAGTTAAAACCACTGATTAATGAACCACGTGAA
TTAGATTCGTTTTTGGCCAGTGTAGATACCGACATTTTCTTGACTAAAAG
TTCTGCCATACGTTATGCTAAGGAATCTGAAGCTAAATCTATCACGAAAT
CAACAAGGTCGTCGGGAAAAAAATCTTCGTTAGAGGGAACTAGTTGTTCG
TCAAAGAGGACTTCTCCAGAAGAACAAATGGTCGGAAATGCTACTCAACT
GGCTAGTCTAGAAGTTGAACTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033767XLOC_033767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053491-exon-scaffold_231-1491911889:346457..347101TCONS_00053491-exon-scaffold_231-1491911889:346457..347101Clytia hemisphaericaexon
TCONS_00053491-exon-scaffold_231-1510915933:346457..347101TCONS_00053491-exon-scaffold_231-1510915933:346457..347101Clytia hemisphaericaexon
TCONS_00053491-exon-scaffold_231-1575043694:346457..347101TCONS_00053491-exon-scaffold_231-1575043694:346457..347101Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053491-proteinTCONS_00053491-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:346457..347101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29238	1.39258	1.00195	1.64871	0.219467	0.0875303	0.365017	0.293819	0.479988	1.16241	0	0.0541926	0.270586	0.0562013	0.0476293	0	0.12217	0.06261	0.259497	0.310062	0.168672	0.133043	0.654365	0.432181	0.174729	0.311883	0.259864	0.48273	1.08761	1.64455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top