|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053490 ID=TCONS_00053490|Name=TCONS_00053490|organism=Clytia hemisphaerica|type=transcript|length=991bp
cccgccaaatttagttttttcgtccatccgccaaaatttcttcctttaag
gtatcatACCTTGAGAGAGGTATTAATGTCGACACAATTTATTTAGACTT
CAGCATTACTACGGCATTCCACAAAGTTGATCATGCAATTTTGCTACATA
AATTGTCTCAGCTTGGAATCAAAGGAAAGCTATTGCAATGGATTGAATCG
TTTTTTAAAGACAAAAAACAATCTGTTGTTGTAAATGGCTTCAAATCCGA
AAGTGCCCCTGTCATATCAGGAGTACCTCAAGGAACAGTACTTGGGCCAA
TTTTGTTTCTTCTGATGATTTCTGATATTGATGATAATATCAGGTACTCA
ATCCTTGCAAGCTTTGCTGACGATACTAGAATGCTTAAAGAAATCCAAGG
AATAATTGACACGTTCAAGTTGCAGCATGATCACAACATAGTTTATGATT
GGTCTGAGAACAATAACATGAAACTAAATATATAGTTGTAAATTCTAACA
TTTGAAATACGGTAAAAATAATGAATCAAAAAGTTTATGAACCTATTTCA
CTAACAACAAAACtgtaattgaaaacaaaaactctGTAAAAGATCTTGGA
GTGTGGATGAGTAGTGACTGCTCATTCGCAGATCACATCAATAAAATGAT
AGCAAAAGCTAAGGACATTTCTAGTTGGATTTTGAGAACATTCAACAACA
GAAGCAGTGATGTTATGATAACGTTATGGAAATCTTTAGTTCTCCCTCAC
CTTGACTACTATTCTCAGCTTAATGGTCACCAAACAGCATCCACCAAATT
GAACAGATTGAATCTGTACAAAAGAActtcttcaataaaatcaaaggccT
TAGTGCTCTTGATTATTGAGAacaattgaaaatgttgaaaatgtaATTCT
CTACAAAAGTGTGACGTTACAGGAAATGACATTGTTTGTAACAATCTttg
tgattgattgattgatatttGTTGATATGTTCAAACTGTAG Run BLAST on NCBI transcript from alignment at scaffold_231:324578..325568 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053490 ID=TCONS_00053490|Name=TCONS_00053490|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at scaffold_231:324578..325568 (Clytia hemisphaerica)
CTACAGTTTGAACATATCAACaaatatcaatcaatcaatcacaaAGATTG
TTACAAACAATGTCATTTCCTGTAACGTCACACTTTTGTAGAGAATtaca
ttttcaacattttcaattgtTCTCAATAATCAAGAGCACTAAggcctttg
attttattgaagaagTTCTTTTGTACAGATTCAATCTGTTCAATTTGGTG
GATGCTGTTTGGTGACCATTAAGCTGAGAATAGTAGTCAAGGTGAGGGAG
AACTAAAGATTTCCATAACGTTATCATAACATCACTGCTTCTGTTGTTGA
ATGTTCTCAAAATCCAACTAGAAATGTCCTTAGCTTTTGCTATCATTTTA
TTGATGTGATCTGCGAATGAGCAGTCACTACTCATCCACACTCCAAGATC
TTTTACagagtttttgttttcaattacaGTTTTGTTGTTAGTGAAATAGG
TTCATAAACTTTTTGATTCATTATTTTTACCGTATTTCAAATGTTAGAAT
TTACAACTATATATTTAGTTTCATGTTATTGTTCTCAGACCAATCATAAA
CTATGTTGTGATCATGCTGCAACTTGAACGTGTCAATTATTCCTTGGATT
TCTTTAAGCATTCTAGTATCGTCAGCAAAGCTTGCAAGGATTGAGTACCT
GATATTATCATCAATATCAGAAATCATCAGAAGAAACAAAATTGGCCCAA
GTACTGTTCCTTGAGGTACTCCTGATATGACAGGGGCACTTTCGGATTTG
AAGCCATTTACAACAACAGATTGTTTTTTGTCTTTAAAAAACGATTCAAT
CCATTGCAATAGCTTTCCTTTGATTCCAAGCTGAGACAATTTATGTAGCA
AAATTGCATGATCAACTTTGTGGAATGCCGTAGTAATGCTGAAGTCTAAA
TAAATTGTGTCGACATTAATACCTCTCTCAAGGTatgataccttaaagga
agaaattttggcggatggacgaaaaaactaaatttggcggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053490-exon-scaffold_231-1491911889:324578..325568 | TCONS_00053490-exon-scaffold_231-1491911889:324578..325568 | Clytia hemisphaerica | exon |
| TCONS_00053490-exon-scaffold_231-1510915933:324578..325568 | TCONS_00053490-exon-scaffold_231-1510915933:324578..325568 | Clytia hemisphaerica | exon |
| TCONS_00053490-exon-scaffold_231-1575043694:324578..325568 | TCONS_00053490-exon-scaffold_231-1575043694:324578..325568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:324578..325568 . |
Blast
The following BLAST results are available for this feature:
|
