TCONS_00053488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053488
Unique NameTCONS_00053488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053488 ID=TCONS_00053488|Name=TCONS_00053488|organism=Clytia hemisphaerica|type=transcript|length=604bp
NttgaaaaagtttcttttgtcTGGATTAAGGTTGCTGTTAATATAATCTC
TTACTTTAGATAAGACTTCTTTACGCAATGCAAGTATGGTTTCCTTTTCC
TCGTGAGGCAATTCTAGTGGTAGCGGCTCAGATACTATTGTTTTCTCAGA
AAAGTATTTACCAAAATAAAATCTGCAAGGAGTATTTTTATATTTGCGAC
ATGTTTTTGAATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAA
TCAGGATCTTCTTCTTGAGATGGTAAGTGAACTTTGATTATCTTATCAAG
AAACTCTATGTATTCTACTTTTGTTTCTTTACTTAGTACTGGTGCATTCA
TGATCCAAAGAAATGAATGAATGTGAGGACTACCACGAACTTGGAATTCA
ACACGGATAGCGTAATAAGTGGTTTTACCAAGAGGGCCATCTAATAtgat
tgttttaaaaaatacttcaaCTCTGTATTGAAAATGTCTAGCCACAAGTA
CAGGATTGCTATTTAACAATTCACATCTTTCATGATAGGAAAGATTGTCT
ATGAATTCATCAGTAACATTTTGACCCTTAAGTTTGTAAATAATAGAGAT
CAGC
Run BLAST on NCBI

protein sequence of TCONS_00053488-protein

>TCONS_00053488-protein ID=TCONS_00053488-protein|Name=TCONS_00053488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
LISIIYKLKGQNVTDEFIDNLSYHERCELLNSNPVLVARHFQYRVEVFFK
TIILDGPLGKTTYYAIRVEFQVRGSPHIHSFLWIMNAPVLSKETKVEYIE
FLDKIIKVHLPSQEEDPDLFNLVKTYQLHRHSKTCRKYKNTPCRFYFGKY
FSEKTIVSEPLPLELPHEEKETILALRKEVLSKVRDYINSNLNPDKRNFF
X
Run BLAST on NCBI

transcript from alignment at scaffold_231:315748..316351

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053488 ID=TCONS_00053488|Name=TCONS_00053488|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_231:315748..316351 (Clytia hemisphaerica)
GCTGATCTCTATTATTTACAAACTTAAGGGTCAAAATGTTACTGATGAAT
TCATAGACAATCTTTCCTATCATGAAAGATGTGAATTGTTAAATAGCAAT
CCTGTACTTGTGGCTAGACATTTTCAATACAGAGttgaagtattttttaa
aacaatcaTATTAGATGGCCCTCTTGGTAAAACCACTTATTACGCTATCC
GTGTTGAATTCCAAGTTCGTGGTAGTCCTCACATTCATTCATTTCTTTGG
ATCATGAATGCACCAGTACTAAGTAAAGAAACAAAAGTAGAATACATAGA
GTTTCTTGATAAGATAATCAAAGTTCACTTACCATCTCAAGAAGAAGATC
CTGATTTATTTAACCTTGTAAAAACTTATCAATTACATCGCCATTCAAAA
ACATGTCGCAAATATAAAAATACTCCTTGCAGATTTTATTTTGGTAAATA
CTTTTCTGAGAAAACAATAGTATCTGAGCCGCTACCACTAGAATTGCCTC
ACGAGGAAAAGGAAACCATACTTGCATTGCGTAAAGAAGTCTTATCTAAA
GTAAGAGATTATATTAACAGCAACCTTAATCCAgacaaaagaaacttttt
caaN

Coding sequence (CDS) from alignment at scaffold_231:315748..316351

>TCONS_00053488 ID=TCONS_00053488|Name=TCONS_00053488|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_231:315748..316351 (Clytia hemisphaerica)
CTGATCTCTATTATTTACAAACTTAAGGGTCAAAATGTTACTGATGAATT
CATAGACAATCTTTCCTATCATGAAAGATGTGAATTGTTAAATAGCAATC
CTGTACTTGTGGCTAGACATTTTCAATACAGAGttgaagtattttttaaa
acaatcaTATTAGATGGCCCTCTTGGTAAAACCACTTATTACGCTATCCG
TGTTGAATTCCAAGTTCGTGGTAGTCCTCACATTCATTCATTTCTTTGGA
TCATGAATGCACCAGTACTAAGTAAAGAAACAAAAGTAGAATACATAGAG
TTTCTTGATAAGATAATCAAAGTTCACTTACCATCTCAAGAAGAAGATCC
TGATTTATTTAACCTTGTAAAAACTTATCAATTACATCGCCATTCAAAAA
CATGTCGCAAATATAAAAATACTCCTTGCAGATTTTATTTTGGTAAATAC
TTTTCTGAGAAAACAATAGTATCTGAGCCGCTACCACTAGAATTGCCTCA
CGAGGAAAAGGAAACCATACTTGCATTGCGTAAAGAAGTCTTATCTAAAG
TAAGAGATTATATTAACAGCAACCTTAATCCAgacaaaagaaactttttc
aaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033764XLOC_033764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053488-exon-scaffold_231-1491911889:315748..316351TCONS_00053488-exon-scaffold_231-1491911889:315748..316351Clytia hemisphaericaexon
TCONS_00053488-exon-scaffold_231-1510915933:315748..316351TCONS_00053488-exon-scaffold_231-1510915933:315748..316351Clytia hemisphaericaexon
TCONS_00053488-exon-scaffold_231-1575043694:315748..316351TCONS_00053488-exon-scaffold_231-1575043694:315748..316351Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053488-proteinTCONS_00053488-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:315748..316351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.722034	1.48972	0.602328	0.318364	3.08701	1.64789	4.35744	3.75461	1.72628	0.863589	1.5849	0.686149	0.91396	1.25106	1.72904	2.45981	1.422	1.77603	0.633092	0.906264	2.44826	1.67589	1.15607	1.01117	2.52444	3.55061	1.80118	1.13984	0	0.835372
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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