|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053482 ID=TCONS_00053482|Name=TCONS_00053482|organism=Clytia hemisphaerica|type=transcript|length=881bp
ACTCCATCTTTTTCGGTTTGATTTCGTGCCTTAGCATCTTCTGCCGCCTC
tttgtacttttttctttgaGCTGGAGTTAGATCTTCGCAAATGCTCATCC
CCTTGTAGGCATCAATTCCTTTTAGCGCtgggagatttccaaaaacatTC
ATTTTCTCTTCTTCACTGTTCAGAGTAACAATGAGGGGACGCTTTTTCCC
GTCTACTGATTTGCCAATTCTTGAGATATACTTGATGTTAACTTTGACGT
GGAGCTTTTTGATGGTGTTCTCACCCATGCTTCATCTTTTTTGGTAGCGT
CCTGTCGTTGGATCCTCAACACCATGGATGATGATGTTCTTTGATCTTCT
GATCTTATCCCTTTCTTCTGCTGCCTCCTCCTCGTGGACCTCTTTAACGG
CGGTCTTGATATTGTCACTAGGCACTTGGACATTGGCAGAAGTGGCTACA
GCATACGATTTTTTACATTCCTCTTTCAATGATGTTAAGATTTCCGCTCG
GAAGGTTTCTAGTTTCTTTTCCAGTTTGCTCTCTACATATTCGACAGTAT
GAAACGCCGGGGCATTAGACAATTTCTTCTCGAGATTAGTGAGCTCTTTT
TTTTGAGATTCAATAATCTCAAGAAGGTGTTGTTCATTAGACTTCAATTT
CTTAATTGTCTTTTCGTTTTAATCGTCTCATTTAATTTTGCAAGCTCAGC
GGCCGTTCGCAGGGATGGTTGAGGTCCAGGTTGAGGGGAGAGGACCAAAA
GATCTTTATTTACTTTCACACAATTTCAACACACGTATTTGCATGCATTT
GCAGTTCTTCTCCCGTCTTTACAGACTGCAATCATGTAGGGTGGTAGCCT
TGTACAAATGTAGTGAACTAGTCGATTACAC Run BLAST on NCBI transcript from alignment at scaffold_231:24650..25530 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053482 ID=TCONS_00053482|Name=TCONS_00053482|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at scaffold_231:24650..25530 (Clytia hemisphaerica)
GTGTAATCGACTAGTTCACTACATTTGTACAAGGCTACCACCCTACATGA
TTGCAGTCTGTAAAGACGGGAGAAGAACTGCAAATGCATGCAAATACGTG
TGTTGAAATTGTGTGAAAGTAAATAAAGATCTTTTGGTCCTCTCCCCTCA
ACCTGGACCTCAACCATCCCTGCGAACGGCCGCTGAGCTTGCAAAATTAA
ATGAGACGATTAAAACGAAAAGACAATTAAGAAATTGAAGTCTAATGAAC
AACACCTTCTTGAGATTATTGAATCTCAAAAAAAAGAGCTCACTAATCTC
GAGAAGAAATTGTCTAATGCCCCGGCGTTTCATACTGTCGAATATGTAGA
GAGCAAACTGGAAAAGAAACTAGAAACCTTCCGAGCGGAAATCTTAACAT
CATTGAAAGAGGAATGTAAAAAATCGTATGCTGTAGCCACTTCTGCCAAT
GTCCAAGTGCCTAGTGACAATATCAAGACCGCCGTTAAAGAGGTCCACGA
GGAGGAGGCAGCAGAAGAAAGGGATAAGATCAGAAGATCAAAGAACATCA
TCATCCATGGTGTTGAGGATCCAACGACAGGACGCTACCAAAAAAGATGA
AGCATGGGTGAGAACACCATCAAAAAGCTCCACGTCAAAGTTAACATCAA
GTATATCTCAAGAATTGGCAAATCAGTAGACGGGAAAAAGCGTCCCCTCA
TTGTTACTCTGAACAGTGAAGAAGAGAAAATGAatgtttttggaaatctc
ccaGCGCTAAAAGGAATTGATGCCTACAAGGGGATGAGCATTTGCGAAGA
TCTAACTCCAGCtcaaagaaaaaagtacaaaGAGGCGGCAGAAGATGCTA
AGGCACGAAATCAAACCGAAAAAGATGGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053482-exon-scaffold_231-1491911889:24650..25530 | TCONS_00053482-exon-scaffold_231-1491911889:24650..25530 | Clytia hemisphaerica | exon |
| TCONS_00053482-exon-scaffold_231-1510915933:24650..25530 | TCONS_00053482-exon-scaffold_231-1510915933:24650..25530 | Clytia hemisphaerica | exon |
| TCONS_00053482-exon-scaffold_231-1575043694:24650..25530 | TCONS_00053482-exon-scaffold_231-1575043694:24650..25530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:24650..25530 . |
Blast
The following BLAST results are available for this feature:
|
