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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053479 ID=TCONS_00053479|Name=TCONS_00053479|organism=Clytia hemisphaerica|type=transcript|length=2155bp
CTCTGTGTCCTTCCTGTAGCTCCACCTTTGTGCTTCAAAAACTGCAAGTA
ATCGTAATTATTATTATATCTATAGGCAATGACTGCTCTGTATTTACTag
tgttgtttttcttttattgttcagGTAACCGACGAAACGAAGGCAACGAC
TAATGTCCATTTTCATTGGAGTGTGGTGCAATCATATAAATCACCTAATT
CTCTGGGCCCCAACCTCGCTGCAGACCCCAGTGAACAGCATTATAAAAAC
TAAGACCGTGATGATAGAGTTAGAAATTGAAAAGTTAGAATGATTCTCGT
TTCCTGGTTCCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTGTt
ttattttctcctttcttttccTTAGCTTTGGCTTTATTAGCATTCTTTTG
TTCTGTTCTGCGATTGAAGTCTACAATGAGGTTtgggtcaaaaatatttt
cgctAGGCTCCCAAGTAGCCTGCGACAAGGGATATCCTTGCCATTTCACA
AGATAACTCGTGATTTCAGATCGCTTTCCGGATTTCAGAATTCTTTCCAC
CCTATAAATATGGTCTTCCTGTTCGATATCCACGTCGGATCTGGGACGTG
TGGCATCGAATCTAAGGGGATGCAATCTAACGGGAAGTCGCAAAATTCGT
CCCCTCCTTCGACCTCTTCGTCCGGTCTTTCCCTGATAGGCCATCGTCCA
AGATgcagaaaaggccttaaaaatggttttatgTTTAAACTCCCAAAAAT
TCGGTGAAAACTAGGTGCTGTAGGAGAATTCGTTTAACTAATTCGCTTCT
TTCagtcaataaaaacaagttaacGGGTCCAAAATGCATTCAAAAACCGA
CTTGTACCATAGAATGAAATATCTTTTCACAAGTTCAAAATAATCATACT
TATACACTCACTTGATCATCGCTTGGTTTTCTTTTATCATCCTGTGAAAA
AATCATCTCATGATTATCTAAAAAACACAgctttcatttttaaaacactT
GATTATTATGACACCTTTGTATCTTCCAAATAACGGATAAAGTTGAACCG
TTTCGAATACTCAACTTTTGTACGGATTCGTGTGCATTCCTAGCATTTGC
AGCTTTTGGCATAAAAAGTCAATTCTCATAACAAAACAACTTATCTTTCT
GCAACTATTGCAAAATCTgcgtcaaaaatttcaaattctctCCCAAATGA
CATCATACACACTCTCGTAAATATACGCCTCACTCACTCCAATAATAATC
CGTAAATAAACTAAGTGATCACGTAAATAACATCTCGCACTTTCGCAATT
AGGCTACACGCTCGCGCAAATAATATCTCACACTCTCGCAAATAGGCTAC
GCGCTCACGCAAATAATATCTCACACGCTCAAATAGGCTACGCGCTTACG
CAAATAATATCTCACACTCTCGCAAATAGGCTACGCGCTCACGCAATTAA
TATTACACACTCTCGCAAATGGGCTACGCGCTCACGCAAATAATATCTCA
CACTCTCAAATAGGCTACGTGCTCACGCAAATAATATCTCACACTCTCGC
AAATAGGCTACGCGCTCACGCAAATAATATCTCACACTCTCAAATAGGCT
ACGCGCTTACGCAAATAATATCTCACACTCTCGCAAATAGGCTACGCGCG
CACGCAATTAATATTTCACACTCTCGCAAATGGGCTACGCGCTCACGCAA
ATAATATCTCACACTCTCAAATAGGCTACGCGCTCACGCAATTAATATTA
CACACTCTCGCAAATGGGCTACGCGCTCACGCAAATAATATCTCACACTC
TCAAATAGGCTACGCGCTCACGCAAATAATATCTCACACTCTCGCAAATA
GGCTACGCGCTCACGCAAATAATATCTCATACTCTCGCAAATAGGCTACG
CGCTCACGCAAATATAATCTCACACTCTCGCACTCACAGATAAACTACGC
GCCAAGTCTCTtaaataaaatctcaaaatctcGCAGTTAAGCCACACGCt
ttctttcttaaagaaaatatcACGATAAAAACTTTGCAAATCCAGGCAAA
TAAAAATCTCTCGTTTGCGGAACTTTAAACGCTTGCAGTAAAATCGTAAT
ATCTagcccaaaaaaacaaaaaaaacgctCGCGctgaaaaaaattggcaa
ttCGC Run BLAST on NCBI transcript from alignment at scaffold_231:356479..358633- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053479 ID=TCONS_00053479|Name=TCONS_00053479|organism=Clytia hemisphaerica|type=transcript|length=2155bp|location=Sequence derived from alignment at scaffold_231:356479..358633- (Clytia hemisphaerica)
CTCTGTGTCCTTCCTGTAGCTCCACCTTTGTGCTTCAAAAACTGCAAGTA
ATCGTAATTATTATTATATCTATAGGCAATGACTGCTCTGTATTTACTAG
TGTTGTTTTTCTTTTATTGTTCAGGTAACCGACGAAACGAAGGCAACGAC
TAATGTCCATTTTCATTGGAGTGTGGTGCAATCATATAAATCACCTAATT
CTCTGGGCCCCAACCTCGCTGCAGACCCCAGTGAACAGCATTATAAAAAC
TAAGACCGTGATGATAGAGTTAGAAATTGAAAAGTTAGAATGATTCTCGT
TTCCTGGTTCCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTGTT
TTATTTTCTCCTTTCTTTTCCTTAGCTTTGGCTTTATTAGCATTCTTTTG
TTCTGTTCTGCGATTGAAGTCTACAATGAGGTTTGGGTCAAAAATATTTT
CGCTAGGCTCCCAAGTAGCCTGCGACAAGGGATATCCTTGCCATTTCACA
AGATAACTCGTGATTTCAGATCGCTTTCCGGATTTCAGAATTCTTTCCAC
CCTATAAATATGGTCTTCCTGTTCGATATCCACGTCGGATCTGGGACGTG
TGGCATCGAATCTAAGGGGATGCAATCTAACGGGAAGTCGCAAAATTCGT
CCCCTCCTTCGACCTCTTCGTCCGGTCTTTCCCTGATAGGCCATCGTCCA
AGATGCAGAAAAGGCCTTAAAAATGGTTTTATGTTTAAACTCCCAAAAAT
TCGGTGAAAACTAGGTGCTGTAGGAGAATTCGTTTAACTAATTCGCTTCT
TTCAGTCAATAAAAACAAGTTAACGGGTCCAAAATGCATTCAAAAACCGA
CTTGTACCATAGAATGAAATATCTTTTCACAAGTTCAAAATAATCATACT
TATACACTCACTTGATCATCGCTTGGTTTTCTTTTATCATCCTGTGAAAA
AATCATCTCATGATTATCTAAAAAACACAGCTTTCATTTTTAAAACACTT
GATTATTATGACACCTTTGTATCTTCCAAATAACGGATAAAGTTGAACCG
TTTCGAATACTCAACTTTTGTACGGATTCGTGTGCATTCCTAGCATTTGC
AGCTTTTGGCATAAAAAGTCAATTCTCATAACAAAACAACTTATCTTTCT
GCAACTATTGCAAAATCTGCGTCAAAAATTTCAAATTCTCTCCCAAATGA
CATCATACACACTCTCGTAAATATACGCCTCACTCACTCCAATAATAATC
CGTAAATAAACTAAGTGATCACGTAAATAACATCTCGCACTTTCGCAATT
AGGCTACACGCTCGCGCAAATAATATCTCACACTCTCGCAAATAGGCTAC
GCGCTCACGCAAATAATATCTCACACGCTCAAATAGGCTACGCGCTTACG
CAAATAATATCTCACACTCTCGCAAATAGGCTACGCGCTCACGCAATTAA
TATTACACACTCTCGCAAATGGGCTACGCGCTCACGCAAATAATATCTCA
CACTCTCAAATAGGCTACGTGCTCACGCAAATAATATCTCACACTCTCGC
AAATAGGCTACGCGCTCACGCAAATAATATCTCACACTCTCAAATAGGCT
ACGCGCTTACGCAAATAATATCTCACACTCTCGCAAATAGGCTACGCGCG
CACGCAATTAATATTTCACACTCTCGCAAATGGGCTACGCGCTCACGCAA
ATAATATCTCACACTCTCAAATAGGCTACGCGCTCACGCAATTAATATTA
CACACTCTCGCAAATGGGCTACGCGCTCACGCAAATAATATCTCACACTC
TCAAATAGGCTACGCGCTCACGCAAATAATATCTCACACTCTCGCAAATA
GGCTACGCGCTCACGCAAATAATATCTCATACTCTCGCAAATAGGCTACG
CGCTCACGCAAATATAATCTCACACTCTCGCACTCACAGATAAACTACGC
GCCAAGTCTCTTAAATAAAATCTCAAAATCTCGCAGTTAAGCCACACGCT
TTCTTTCTTAAAGAAAATATCACGATAAAAACTTTGCAAATCCAGGCAAA
TAAAAATCTCTCGTTTGCGGAACTTTAAACGCTTGCAGTAAAATCGTAAT
ATCTAGCCCAAAAAAACAAAAAAAACGCTCGCGCTGAAAAAAATTGGCAA
TTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053479-exon-scaffold_231-1575043694:356479..358633 | TCONS_00053479-exon-scaffold_231-1575043694:356479..358633 | Clytia hemisphaerica | exon |
| TCONS_00053479-exon-scaffold_231-1510915933:356479..358633 | TCONS_00053479-exon-scaffold_231-1510915933:356479..358633 | Clytia hemisphaerica | exon |
| TCONS_00053479-exon-scaffold_231-1491911889:356479..358633 | TCONS_00053479-exon-scaffold_231-1491911889:356479..358633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:356479..358633 - |
Blast
The following BLAST results are available for this feature:
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