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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053461 ID=TCONS_00053461|Name=TCONS_00053461|organism=Clytia hemisphaerica|type=transcript|length=3106bpRun BLAST on NCBI protein sequence of TCONS_00053461-protein >TCONS_00053461-protein ID=TCONS_00053461-protein|Name=TCONS_00053461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp MVTSPSFLLLVFLISFLGHAVQANISNCCRIGISDATKQIVLEKDQITCSRun BLAST on NCBI transcript from alignment at scaffold_231:235870..242876- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053461 ID=TCONS_00053461|Name=TCONS_00053461|organism=Clytia hemisphaerica|type=transcript|length=7007bp|location=Sequence derived from alignment at scaffold_231:235870..242876- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_231:235870..242876- >TCONS_00053461 ID=TCONS_00053461|Name=TCONS_00053461|organism=Clytia hemisphaerica|type=CDS|length=23472bp|location=Sequence derived from alignment at scaffold_231:235870..242876- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053461 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4) HSP 1 Score: 172.94 bits (437), Expect = 1.310e-44 Identity = 137/452 (30.31%), Postives = 203/452 (44.91%), Query Frame = 3
Query: 522 ADKFEEIQNKLNLQLNGATQKLLCKTIYKQCCISSVKSNFCTTGIELGQSNAICSGGKNDIGGGAAM---ECCDCCKVGEKAASKREDCDAVKFKNDLCTHAYRKCCKDKEQEMPIQTTQTPQRKTCSDIVCDKASTV-------------SCGETNDGPVCHCKDGYFAGLDKITCHDMDECLANKTICSVGK-CQNTMGSYECVCDVGFEMQDNKCVKSTDKECRKGFEL-KDGECVDINECVTGAENCHSDLMCLNVNGTFRCIEPQNCHSKYQAIYSTITNKRYCEDIDECAIHGNQICRNPFTECINIVGGYQCKQ--TRCQDGLKL--LNGYCTDIDECIEQPGICGEKGRCINLSGSYSCICNEGYKPDPATKKCIDVNEC-RLKLHQCSYQCINTPGSYYCKCPTGYE-ARSTKACNDIDECATGGHDCSGSERCFNTYGSYRC 1805
AD ++ + L AT+ C+ + +QCC S ++ C TGI L C+ D A CC CC +G A ++ + C+ C ++ CC ++ + + ++ ++ C +T D VC C GY D ++C D++EC+ C +G+ C NT+GS+ C D C G+EL +D C DI+EC +G NC D +C N G+FRC C S + I + N C DI+EC + + C T CIN G Y C++ C G L C D+DEC CG+ RC+N GS+ C C GY D ++ C+DVNEC R C ++C NT GSY C C G+ + ++C DI+EC++ S+ C N YGSY+C
Sbjct: 38 ADGHRMATHQKDCSLPYATESKECRMVQEQCCHSQLEELHCATGISLANEQDRCATPHGDNASLEATFVKRCCHCCLLGRAAQAQGQSCEYSLMVGYQCGQVFQACCVKSQETGDLDVGGLQETDKIIEVEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRC---------------QRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGF--IQDALGN---CIDINEC-LSISAPCPIGHT-CINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSS----PCSQECANVYGSYQC 463 The following BLAST results are available for this feature:
BLAST of TCONS_00053461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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