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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053450 ID=TCONS_00053450|Name=TCONS_00053450|organism=Clytia hemisphaerica|type=transcript|length=478bp
AGAAAGTACTAAGTAAAGTCACCCGCTCAATGTGAAATACAAGAAGAGTA
AAGATGCAGGATTACACAGTCGAACCGGAAGGCTGATAAACAGCAAACGT
GTTCCAACCAGCCAGCTTTCTCTGTTTTTAGCttcatgaaagaaaaacaa
actggATTTGAGGTGAATGATTTTAAGATTCTTCAAACACTGGGCAAATC
TACATACAGTTGTATTGAGAATCAAACCAAACATTCAAGGAAGGAATTTC
ACAACAACCAAAATGACTGAGCAACTTGAAAGGAAGAGTAACGTCAAAGT
TAACACTTTGCTTGAAATTGAACAGAATGTCCAAAAGAAGTGGTATGATG
CAAAAATCTTTGAAGAAAATGCTCCACAGGTAAGGCGGTgaaaatgtcaa
gctcctttttATGGCTCTCAATGGCCAATTAAGTTTTGAAACTGTATTGG
GAGAAAATGTCAAATACTTTATAGTGAA Run BLAST on NCBI transcript from alignment at scaffold_231:99275..108185- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053450 ID=TCONS_00053450|Name=TCONS_00053450|organism=Clytia hemisphaerica|type=transcript|length=8911bp|location=Sequence derived from alignment at scaffold_231:99275..108185- (Clytia hemisphaerica)
AGAAAGTACTAAGTAAAGTCACCCGCTCAATGTGAAATACAAGAAGAGTA
AAGATGCAGGATTACACAGTCGAACCGGAAGGCTGATAAACAGCAAACGT
GTTCCAACCAGCCAGCTTTCTCTGTTTTTAGCTTCATGAAAGAAAAACAA
ACTGGATTTGAGGTGAATGATTTTAAGATTCTTCAAACACTGGGCAAATC
TACATACAGTTGTATTGAGAATCAAACCAAACATTCAAGGAAGGAATTTC
ACAACAACCAAAATGACTGTGAGTAGTCATATGTTTTATTTTCTTATAAC
TGTATGTATCCAGACCAGACGCCCGCACTCGATAGGATCGATCATCGGAA
CGGCTCAATGACAGATCAAAATGTGATCGATGGATTACTTGACGATTGGG
ATAGAAGATTGATGGAAGATTCAGCCATTAAAAAGTCTTGAGTATCGATC
CTTTGTTGATCCATTATCGAGCTAGTATTTCAATCGAGTATATCGATTCA
TCATCAATCGTTAATCGATTCGTCATCGATCGTTAATTGATTTGTTATCG
ATCGTTACGGTAATCAATTTTTATCGATCATAAGGGGCATAGTTGTCAAC
TCTCAAAGATTTCTCCCGCTGCGTGAAAAAAACTCCGCCAAATCTCCCGC
ATTTTCAGGATTTTCTCCCGCACCACTGCTGTTCCCCTCAGGCAAAATCG
TCGATTCTGTAGAGCTCACGAAATTGCCGAATACAGACGTCAAAAAAAAA
ATAATTCAAAATGGCTGCCGAGCGAGCACTGACAAAAACAAAAAATTAGG
AGTTTTCAATTGCCTACTACAGCAGAATAAGACAGAGAAATGCAGTAAAA
TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGTCAAAATAAGGAAAATATTCTAGCTGCAGT
AATGTTTACATTCAGAAATAAATCCATTTTCCACCAGACCTACAACAAGG
TTTCAAACCACGCTGCGGCATTACTGCAATGCAATGAATTCTGACTTAAA
AAATGTTGGTCCAGTTCCCTAGAAAGGGTATGATTACACTTCCAAATGAC
TTTTTATTACAATAACATTTGTCTTCTCACAAATCCAAAAATAAAGGTTA
TAAAACCAACACGGGGGTCAACATTCTTTACAACAAACCGTCAGATCAAA
CTTTATAAAGATCAATCACGTAAATGTCACTTGTTTTCCTGATATCTGAA
TAATATTAAAACCTTTCTGTATATATTTGGTTCTTCAAAACCATTTCCTT
TTCCCGCAGCAGGCTTTAAAGTCCATGTTGACCCCCGGTTTTATTTGCGC
GGTAATCTAGAAAGGCCTTTAGTGCGGTATAAACAAATGATTTCATTGGT
TTAAAAAAGTCAAAACATCAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCGTTTTAATTCGGCAAAGTTTAGTAA
ACTCGACCACGTATCAATGTTTTGATTTTTCAAGCGGGGATTTCTGTAGA
ATGATAAAATATGGCTTGGCTGGAATCGACACCATAACAGCAGTGGCACG
TCCCGCATTTCCAAAATTTTCCGATTTCCTGAAAAAAAATATAGTGGATT
TGGAAAAACGAAAGAATTCTCCCAGATTTCCCGAAAAATGTTTCGATAAA
ATCGGATTTTGCGGAAGAATTTTCCCGATTTCCTGATTTTGAAGAATTGA
ATTATCGGGGAAAATTTTCCGACTTGGAGCTCTCCCGCATTTTGGTGAGG
CGAAGTTGACAGCTATGAAGGGGTCACTCACAAATCGATTTTAGGTTAGA
AGAACGTCAATTGACGTTTTAAAAGCTGACCCACCCAGCCACACCCAAAA
ACGTCAAACACCTTGATATCCCCAAAAATCGATAAAACTACATCGCTGTT
TCAGCCATCTTGATTTTCACTACGGCTCGCATATAGTTTATATTTGAAAA
AAAAAAGAAACAGAGATAATTTTTGAACTTGTTCACAAAATTCCCGTAAT
TAATTAGTCTCCATAGTATGTAGCGACAGAAAAGAATGTCCATCTGCAAA
AATTCAAGGGCCGTTCGAGCAGTCATACAAAGAAAAGACATAAACATTGT
TTTGGTTTTCAAAACAAACGAAGCGATCAAACAGAAACATGGCGAGAAGC
AGTAATATTTAGCATGGAAATAAAAATCGATGCTTCTGAAAAACGTCAAC
AACCTTTAACCTACCCACCCATATACGTCAATTGACGTTCTTCTAACCTA
AAATTGATTTGTGAGTGACCCCTAAATCGAGATCGATAAAAGATCGATTA
TAGATCAATAAATAATCGATAACTAATCATAAGCTTAAAAAAATCTTGAG
TATCGATCCTCTATCGATCTTCTATCCGGATCGTTAAGTAATCCATCGAT
CACATATCGATCCGTCATCAAGCTGTTCCGATGATCGATCCTATCGAGCG
CGGACGTCTGGATGTATGGCGCTCTAAAAGTAGAAATGAATACTTTTTTT
TAGACAACACTAACTATCTTTGTTAAACGAAACTAAATCTTTTTCAAACC
CACTGATTTCAATGCTCCAAAGATGGGATGCTAACTTTTTTAGCTGTCAA
AAACTTAGGGGATGGAAATAATAATATATTGTAGGGATCGAAATGTCCAG
ACGATCTCAATCAAACGGAATCGACGATCGAACCAGTTGAACCAAATCGA
ACTCAATCGGCCGATTGAATTTCGATTGTCGAAAGCAATCGAATCTCAAT
TGAACGTCAAAATTCTGAGTAATATTCGGCTAGTTCAAAACACGGATCAC
AGGTCACGAGTTACGGGGCAGCTCTGATTAAAGTAACTCAAATAGAAATT
GTTTTAAAAACGCTAAAAATTACTGAAAAAATCAATTTGAAGGTGTTTTA
TCCACGCATGACTGTTTAAAACGTCAAAATCTAACCACGTGCTTTCGAAG
TTTGCGTCGTGTACAACGCAGACCAGAAAACACTGCAATAACAAGCTTAT
ATTATCAATAATACACTTTTAGTGCTATATGCATTTTATATGTTATACGT
AAGTACCATCACCTGAAAACCGAGCTTTCTCAAGAAAATGATAGTACGGC
TAGTGTTAAATCATATCTCATTATATCCCCTCCATCACCATGAGTATGAA
TATGATTTTAATGGATAATAACTTAAAAATGATGTTAATTTATAAATGTG
TCAATATTTTCCACCTACCATTATAAATTTTTAATAAAAATGACGTAATT
ATACTCATATCTCTAAAACCACTATCTTGCAGCATTTAATCGTTTTAAAA
CATGTCAATCTATATCCAGTCACATGATTAGCATCCTATTGAGTATGAAA
AAGTATTTTGCTGTAAATTGGTTCGGAGGCCTTATATTTCATGATTTTAA
CAATATTTTTGTCATTCAATATCATTTTGTCAAAATTTGTGGGTGACATA
TTATTTAAAAATTTTCATGGTATGATGATAATACTATTCGTATATAATTG
TTTCAGACATACTATTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTC
TGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTCACCAAAACTTTGGG
GCAGGCTGGAGACTTCAAAAATGGTCCGATTTGGCTGAAATTTTGCGCAC
TTGATCCTTAGGCAAATCCCTGGGGGCGTTTTTTTCATTTTTTCAAAATT
TTAAGTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAAC
TTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGATTTGGCTGAAATTTT
GCGCACTTGATCCTTAGGCAAATCCCTGGGGGCGTTTTTTTCATTTTTTC
AAAATTTTAAGTTTTGGGGCCTGGGGACGAGGTTTTTGCCAAAACGAGGC
TGAAACCCAAAATGCTATAATTTTTCTTAAGCCATTAAGTTTACAATTGG
GCCTACGAATGATTTCAAAGATACTGAAGTTGAGCCAGTGTGGTTAGCAC
GTTCGACAGTACTAGTAGTAGTACTATTATATGTGTTATTCTCAACTTCA
GTTGAGCTATAATCTGAGAATGTCTGTCTGTCTGTCTGTCTGTCTGTATG
TATGTCCGTCCGAAAACTTTAGGGCAGGCTGGACACTTCAAAAAAGGTCG
GATTTGGCTGAAATTTGGCACACTTGTTCCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAG
CCTGGAGACTTTAAAAATGGTCGGATTTGGCTGAAATTTGGCACACTTGT
TCATTGGGTGAATATCTGGGGGTCTACAATTGGGCCTATGAATGATTTTA
AGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTCGACTATGTAGTAC
ATGTTATGAATTATACGTCAAGATATCGTTATATTTTTTCCGGTCTGTAA
TTTATATGCCCCATACCCTGTGCCCGTACCCCCTGACCCGTGTTTCGAAC
TAGCCGGGTAATATTCGATTGATTCAATTGTTGTTCGACTGGTTCGATTG
TCGTTCGACTGCATTCGATTGTTCGGGTGAAACAAGGCATGTCCCAAATA
TATTTTGCGTGACGCACCGCTTCCCATTATTCCTTAACTCTCATATATAG
CTGAAAAGAATGGAATCAACGGAGGATTTCAAAAAGGGTCAGCTTTTTAA
CAAAGATTAGTGTCTCTAAGGGTCGGATCCTAATCGAACGCAATCGAACA
TCAATTAAACGCAATCAAATATCAATCTAATCTGAAAATTGCGCTAATAT
TCAGCTGCATAATTTCGCAGCCTTAGCCTATGGACCAAAACCGGCATCGC
AGGGCCTGGACCGGGGTCCCAAAATAATGCGCATTTTTGGTCTGTAATTT
GTATGACCCGTGACCCGTGTTTCGAACTAGTCGCAGATAATCTGTAAAAA
AAAGGGGGGTAAGATTTCATTACAGAAGTGTTGAGTACCGTCAACGGCTC
TAACTTGGGACAATTGGTCAAAACATTGGATTGTTGATATATGGCCTGTA
TTTTCACTTACTGTGACAGATATCGCAATTGCAATTTTACGTGGAAAAAC
AGACTTTTTTATATCTGTGTTTCGATGCTTGCTTGAATGCATGCAGTCGC
ATTTACATATTTCTCGTTGTTCTTTTTGAGCCTACCTGGTGACAGTAATC
TCAATGCAAGATTTCAGTCTGAAATCACAATTTTCGTCAGAATACCTAAC
TTTTACATAATACCTTTAAAATTCTCAGCACCCTATCAGGCTTTCTTTTA
CTTTTTTTTTATAGTTCAATCATGTAATAAAGGTTTTTATATGACTATTA
TTGTATTTTTATATGTAGGGAGAATGGGCCTTTGGGCTTGATGTTGCTTA
AATATATAGATAGATAGATGGATAGATAATAGCGTATTCACATTATTTGG
TTCAGTGAAATCAGGGATATGTAATAGCCAAGCTGGATAACGCACATTTA
AAAAAGCCTTGTTCTATCTCTGTACCCTGACATTAAAATTTGATTGAAAT
TTGGATTTTCTCTTAGCCAATGAATCTGCTGTTGCATTTATCCTTCATTA
GTGATCAAAGTTCTTCAATCTCAGATGGACTTCCGTCTCACAAAAATATT
TGTCAAAGTTATTCTGTATCAGTTAGAAATTTTTAAAGAGGGATTATGAA
AGCTTCTCAAATTCATAAAACATGCTGATAAAATTAGATTTCATTTATAA
GGAAACTTTTGGGGTATCTTCTGCAAATATTATTTTGATGAAAAGCGAGA
TAGCAAAAAATGTGCATGAATACTTTGTCTGCTTCATTTTTCTTATAAAA
ACAGAACACTCACGGGTACAGAGATGGGTTTCTATTATGAACAGTTTATA
GAAGCAATCTGCTAAGGAATTCTCATCCTTCATCCAGCTTCGCTATTACA
TATCCCTGGTGAAATGGTGGCCGAATTGGCATCCCATTTTTTGTCAGATA
GTCCCAAGTTAGAGGGGTTGACGGTATAAAGGGAGTTTATATCTTTGCAA
ACTATGTAAAGTTCAAAGCTTGCAATCTTCAGATGTATTTTCTTCTTACA
GGAGCAACTTGAAAGGAAGAGTAACGTCAAAGTTAACACTTTGCTTGAAA
TTGAACAGAATGTCCAAAAGAAGTGGTATGATGCAAAAATCTTTGAAGAA
AATGCTCCACAGGTAAGGCGGTGAAAATGTCAAGCTCCTTTTTATGGCTC
TCAATGGCCAATTAAGTTTTGAAACTGTATTGGGAGAAAATGTCAAATAC
TTTATAGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053450-exon-scaffold_231-1575043694:107918..108185 | TCONS_00053450-exon-scaffold_231-1575043694:107918..108185 | Clytia hemisphaerica | exon |
| TCONS_00053450-exon-scaffold_231-1575043694:99275..99484 | TCONS_00053450-exon-scaffold_231-1575043694:99275..99484 | Clytia hemisphaerica | exon |
| TCONS_00053450-exon-scaffold_231-1510915933:107918..108185 | TCONS_00053450-exon-scaffold_231-1510915933:107918..108185 | Clytia hemisphaerica | exon |
| TCONS_00053450-exon-scaffold_231-1510915933:99275..99484 | TCONS_00053450-exon-scaffold_231-1510915933:99275..99484 | Clytia hemisphaerica | exon |
| TCONS_00053450-exon-scaffold_231-1491911889:107918..108185 | TCONS_00053450-exon-scaffold_231-1491911889:107918..108185 | Clytia hemisphaerica | exon |
| TCONS_00053450-exon-scaffold_231-1491911889:99275..99484 | TCONS_00053450-exon-scaffold_231-1491911889:99275..99484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:99275..108185 - |
Blast
The following BLAST results are available for this feature:
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