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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053447 ID=TCONS_00053447|Name=TCONS_00053447|organism=Clytia hemisphaerica|type=transcript|length=3879bp
agcctgggaacctgttctggtctgtaaaatacacaaataggtgccaattt
tttgggtctgagatttaaatccatttttgacccctaaactacaaTTGTGC
AAAGTCTCATGCTTGCACCCCTTTGTGCACAATTTTTACACGATTAGACC
GTACTAATAATTACTGTATGATAAGTTTTAATTTAAcattcttatttatt
ttttttagaaataaaaatagaataGTGGCTAATGGAAGGGGAAACCATCA
AAGCAGAACCGGAAGATGCACCCCTCCCTCCACCCCCTATGCCTCCTATA
GTTAATGGGGTAGCCAGTAGTGGAGAAGAGGCAGCAAACATCAAGACAGA
GGACATCAAGATAGAGGAAGGAGACAAAGAAGAAGCAGTAAACGTTGGGA
ATGGTTTCACTGGGAAAGTGGTACGAATCAGCAATGTCTCTTCTGGAGCT
ACATTGCAACAATTAGCCACGTTATTTGGTTACTTGGGCACCATACAAGA
TATTCGAATGTATCCTACGGAAGAGAACCCAACCATCAAAATACGATTAT
GTTACATCAAATTCGACACCTCTGAACAATGTGGCGTTGCACAACATCTC
ACCAACACCGTTTTCATTGATAAACCACTCATTGTTGTTCCAATGAATCG
AGAAGAGATCCCAGAGGAGAAGGATTGCCAACATTTAATTTCCACTATCA
ATGCGTACGCCCTTGCAGCAGGGACAGGGTTCTTACCTCAATTCTTCCCT
CAAGACACGTCGAATGGTGCAGGATTGCCAGGACTTCCTCCACCACCGAT
AATCACCACAACCACTGATCCAGTAGAAATTGAAGAAATCAAACGAACAA
TCTTTGTGGAAGATATTGCGGATGATTTGTCGGCTGAGCAATTGATGGCA
TTTTTTTCCGGCGTTGGGGAAGTGAAGTATTTGAGATTCTCGAAAGGTGA
AGATGGAGACAGAAGATTTGCTCTTATCGAATTCTCCAACCTCGAATCTG
TTCCTACTGCTCTGCAGTATAATGGTGTTTTGTTTGGTGGCAAATGCTTG
ACAGTTCATTATTCGAAGCATCCCATTGTCAAACCTGAAAGTGAACGGAT
TGCGTCTGGCAAAAGTGGTGTTCGAAAATCACAACGTGATGCCGTTAAAC
GTCCCTCCTCAATCGAGCCAGCAAGACCTCGCATATTTACCTCTCGTTCT
AGGTCGCGTAGTAGATCTCCATCTCGTTCACGTCGCAGAAGTCCCTCCCG
TGAACGTCGTAGACGTCGAAGTCGCTCCCGCACAAGGTCTCCAAGACGCC
GTCGATCTCCGACACGTTCGCCTCGTCGTAGATCACCACGTAGAAGGTCT
CCGAGAAGGAGCAGATCACGAAGCATAGGCCGTTCGTCAAGGCGTCGTTC
CAAGTCTAGAACTAGGTCTCCAAGACGTCGACGCAGAAGTAGAAGCCGAT
CGCGCGATAGACGTCGAAGGAGAAGATCTCCTACCAAGTCACCCTCCCGA
TCACCACGACGTCGAAAAAGAAAATCCAAATCCAGATCTAAGTCACGCTC
CACCTCACCTAAACGAAAGTCATCTCGCAAATCGAACTCGCGTTCGCCTG
ATCGTGAGCGCTCGTCCTcttcaaagaagaaaaagaaagataaaaagaag
GAGAAGGAAAAGGTCGATGAAAAATCTGACGATAAAGAACTTAAGAATTT
GTTGAGTAAGATTAAAACTTTCGAAGAGAAGACACATGGTgataaaaagg
aaaagaaaggcAGCGAGGAGCCGGCTTCAAGTAAGAAAGAAAAGGAGAAG
GATAAAGAATGAATTGTTTTAGTGGGGTTATCTTTATTCTTGTAGAATAC
ATGAAAGACCAAACGTTTGGAAGCTTGATCGAGggaggttgaaaaaaaaa
atctcgatACCTTCGTATTCTGTGCAAAATATTCAGATGAAATGTAAAAC
AATTTTTAGTTTGtgaacaaatgatttttaatcaCTTTTTATCAGTTTTT
TCGTACAACTCAATTGTTTCCCAAAATATCCTTTACTACTCTAATCCCAA
ATTTTTCTTATGATACAGTCtttgaaaaactgatttttcgagatttttac
TTTAATTCAGTTTCCCATTTCTTTGTTTATTATATACTTTTCACTTGTCT
CTGTATGATCAAAATACAATAACACTTGTTTCACTGCATTTTGTTTTCAG
ATATAAGAAATACAgaaaaaatgttattaaaatgTGACTTGGTGGTTTTA
AACCGTTCAGCACCTGGGATGGAGAGCCGTAAATGTCACTCCACCTTCAT
GCTGggcaaagaaaagaagaaagacaaACATGAAGTCTTTTTCACTATTT
ATTCTGTCAAAAGTAAAAGTGGTACCAAGTATAAGGTTCATGACAATATA
CTGAAAGTGCACAACCGGTTCGCAAGGGAAGGCGGACGTCAACGCATTGA
AGAAATTTTTACACGTTTTGAAGTTGGTCTTTAACAAAGAGGAGATCAGC
AACATATCGgaattggaaaatattttaaaagtcaaaaaatgtgATATcga
aaaaccgaaagtaaaaaTGCAAGTTCTCTCACGGAAAGAATATCCTTTGA
AAAATGGATTTCCATCGACGTTGGAGACGCTTATCATCAATGGATGTGTT
TTACAAAGACTAGATGCTCGAATTTTGAAACTATCTGCTCTCACTATTTT
GGATTTGAgtgaaaacaaattgaaaacatTACCCGAATGTTTAGATGGGC
TTAAAAGTTTAAGGTGCTTGAATTTATCAAATAATGACTTTGATTGTTTT
CCATGTTGCTTACTACGGAGTGAAACTGCTGACAGGATTCACATTCTAGA
AATGAACTTCAATAAGATTTCATATCTTCCAAATaatatcgtccgtttaa
agaaCCTTCATACCTTGAAGATAAAAGACAATCATTTAGTCTCTATCCCG
CATTCATTTGGAAATATGAAATCGTTGCAAAGGCTGGAATTGACCAATAA
TATGCTGCAATGTCTACCttggagttttttgaagttgaaattCGATTTTC
TTGATATTAGTGGAAACGCATTCGGTGAAATGAATGTCGGTTTACTGGAT
GAGAAATATCATAAAGAACTTCCGGTGCCGTCAACACTGTTTGAAATTTG
CTGCAGAAAGATTATTCAAACGGATACCAAGTCGAAAGATTTGCAACGAT
TGCCAACTTTATTGAAAGACATTCTCCGGTCACCGAAATATTGTCCTTGT
GGGATGCCATGCGTCAATGAAGGGATCCCTTATGTGTTCTCGTACGATGT
CTCGCGGCTGACTCACGCCATGTCTTATAGTATGGAAAGAGACCACCTAA
AGATATTGAATTATTTATGTTCTATGAAGTGTTATCAATCGTATTGCAAA
GACCCTGTTCTTTTTCAAAGGCGCGGATTTTTGAAACGAAAATGAAACGT
ATTTGTCATTATTTCactgttttatttttaagtaccatatttttgcaacc
ttttaaagaatattcatTCATTGACTTCATCTTTCTCGAAGTTTTCAGGA
CTTCGAAGGTAATCCCGGTAAAAACGTTTTTTGcagctctattttttttt
taatatttaaatttttgaaatttttctgttgCAATCTTTTAATCCCGCTG
GTATACAGCTTAAGTCAACTTTTATATATTGAGACGTGGATGATGTAAAA
CTTTTCGCGAAgtcaaaaagtcgcgaaatttagcTAATTTAAGTTTCGTG
AATTATGGTTTTAGCTGAAACTTCACAGatagaactttcgcgaattcata
taaaatttaccttttttggtaacaaaaactaTAAAATACGCAAAAATTTT
GCAAGCAGTGCAAAAATGAGTAGAAAAgt Run BLAST on NCBI transcript from alignment at scaffold_231:72457..77332- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053447 ID=TCONS_00053447|Name=TCONS_00053447|organism=Clytia hemisphaerica|type=transcript|length=4876bp|location=Sequence derived from alignment at scaffold_231:72457..77332- (Clytia hemisphaerica)
AGCCTGGGAACCTGTTCTGGTCTGTAAAATACACAAATAGGTGCCAATTT
TTTGGGTCTGAGATTTAAATCCATTTTTGACCCCTAAACTACAATTGTGC
AAAGTCTCATGCTTGCACCCCTTTGTGCACAATTTTTACACGATTAGACC
GTACTAATAATTACTGTATGATAAGTTTTAATTTAACATTCTTATTTATT
TTTTTTAGAAATAAAAATAGAATAGTGGCTAATGGAAGGGGAAACCATCA
AAGCAGAACCGGAAGATGCACCCCTCCCTCCACCCCCTATGCCTCCTATA
GTTAATGGGGTAGCCAGTAGTGGAGAAGAGGCAGCAAACATCAAGACAGA
GGACATCAAGATAGAGGAAGGAGACAAAGAAGAAGCAGTAAACGTTGGGA
ATGGTTTCACTGGGAAAGTGGTACGAATCAGCAATGTCTCTTCTGGAGCT
ACATTGCAACAATTAGCCACGTTATTTGGTTACTTGGGCACCATACAAGA
TATTCGAATGTATCCTACGGAAGAGAACCCAACCATCAAAATACGATTAT
GTTACATCAAATTCGACACCTCTGAACAATGTGGCGTTGCACAACATCTC
ACCAACACCGTTTTCATTGATAAACCACTCATTGTTGTTCCAATGAATCG
AGAAGAGATCCCAGAGGAGAAGGATTGCCAACATTTAATTTCCACTATCA
ATGCGTACGCCCTTGCAGCAGGGACAGGGTTCTTACCTCAATTCTTCCCT
CAAGACACGTCGAATGGTGCAGGATTGCCAGGACTTCCTCCACCACCGAT
AATCACCACAACCACTGATCCAGTAGAAATTGAAGAAATCAAACGAACAA
TCTTTGTGGAAGATATTGCGGATGATTTGTCGGCTGAGCAATTGATGGCA
TTTTTTTCCGGCGTTGGGGAAGTGAAGTATTTGAGATTCTCGAAAGGTGA
AGATGGAGACAGAAGATTTGCTCTTATCGAATTCTCCAACCTCGAATCTG
TTCCTACTGCTCTGCAGTATAATGGTGTTTTGTTTGGTGGCAAATGCTTG
ACAGTTCATTATTCGAAGCATCCCATTGTCAAACCTGAAAGTGAACGGAT
TGCGTCTGGCAAAAGTGGTGTTCGAAAATCACAACGTGATGCCGTTAAAC
GTCCCTCCTCAATCGAGCCAGCAAGACCTCGCATATTTACCTCTCGTTCT
AGGTCGCGTAGTAGATCTCCATCTCGTTCACGTCGCAGAAGTCCCTCCCG
TGAACGTCGTAGACGTCGAAGTCGCTCCCGCACAAGGTCTCCAAGACGCC
GTCGATCTCCGACACGTTCGCCTCGTCGTAGATCACCACGTAGAAGGTCT
CCGAGAAGGAGCAGATCACGAAGCATAGGCCGTTCGTCAAGGCGTCGTTC
CAAGTCTAGAACTAGGTCTCCAAGACGTCGACGCAGAAGTAGAAGCCGAT
CGCGCGATAGACGTCGAAGGAGAAGATCTCCTACCAAGTCACCCTCCCGA
TCACCACGACGTCGAAAAAGAAAATCCAAATCCAGATCTAAGTCACGCTC
CACCTCACCTAAACGAAAGTCATCTCGCAAATCGAACTCGCGTTCGCCTG
ATCGTGAGCGCTCGTCCTCTTCAAAGAAGAAAAAGAAAGATAAAAAGAAG
GAGAAGGAAAAGGTCGATGAAAAATCTGACGATAAAGAACTTAAGAATTT
GTTGAGTAAGATTAAAACTTTCGAAGAGAAGACACATGGTGATAAAAAGG
AAAAGAAAGGCAGCGAGGAGCCGGCTTCAAGTAAGAAAGAAAAGGAGAAG
GATAAAGAATGAATTGTTTTAGTGGGGTTATCTTTATTCTTGTAGAATAC
ATGAAAGACCAAACGTTTGGAAGCTTGATCGAGGGAGGTTGAAAAAAAAA
ATCTCGATACCTTCGTATTCTGTGCAAAATATTCAGATGAAATGTAAAAC
AATTTTTAGTTTGTGAACAAATGATTTTTAATCACTTTTTATCAGTTTTT
TCGTACAACTCAATTGTTTCCCAAAATATCCTTTACTACTCTAATCCCAA
ATTTTTCTTATGATACAGTCTTTGAAAAACTGATTTTTCGAGATTTTTAC
TTTAATTCAGTTTCCCATTTCTTTGTTTATTATATACTTTTCACTTGTCT
CTGTATGATCAAAATACAATAACACTTGTTTCACTGCATTTTGTTTTCAG
ATATAAGAAATACAGAAAAAATGTTATTAAAATGTGACTTGGTGGTTTTA
AACCGTTCAGCACCTGGGATGGAGAGCCGTAAATGTCACTCCACCTTCAT
GCTGGGCAAAGAAAAGAAGAAAGACAAACATGAAGTCTTTTTCACTATTT
ATTCCGCCAAAAGTAAAAGTGGTACCAAGTANAAAGAAGAAAGACAAACA
TGAAGTCTTTTTCACTATTTATTCTGTCAAAAGTAAAAGTGGTACCAAGT
ATAAGGTTTGTCGTCAAATTCCATTTCCATTGTTGGTCAATTATTCGGAT
GTATTGTATATTTGACTTTGCAGTAATTCATTTACGACTTACTTACCTAC
AGTCAGGGTTTCAAAATTCAAGATGGAATCCGCGGCTATTTACTTTTATT
GTCGAAACTTTTAAGATATTGTTTTTATGAGTTTCAAATCATGTGCGCCT
CCTACCATGACAAAGCAGAATTAACAAATAAATTTTTCAAATTGGAGCTT
GTGTGAAGTTGAAGGCGACGTAAGTCGATCTTTCTCTTGTTATGAAATGC
TGTGTTTGTTAGCAAATGGAAGTTAAATGTCAATTATAAATTGATTTTCT
TTAAACATTAGGTTCATGACAATATACTGAAAGTGCACAACCGGTTCGCA
AGGGAAGGCAAATGTACATTATCAATGAAAACCCCTCCACATGATTTGGC
AATATCTAAGGTTTGATATCCTTCCTTTTATTCGAACTGGTTTGAGCGTT
ATTTTCATATCTTTGTTTTTTTAATTAAAGAACCTCCTCAAAGAATTCGG
ATGTAAATTAGTCTTTTTTCTGGATTCCTCGAGAAACACCGATGGAACAA
CGATACAGGGATGTTCCCAAATAAAGAGGGCGACAAACATNAAACACCGA
TGGAACAACGATACAGGGATCTTCCCAAATAAAAAGGGCGACAGACATTT
TTACTTTTCTGCACTTTCCAGGCGGACGTCAACGCATTGAAGAAATTTTT
ACACGTTTTGAAGTTGGTCTTTAACAAAGAGGAGATCAGCAACATATCGG
AATTGGAAAATATTTTAAAAGTCAAAAAATGTGATATCGAAAAACCGAAA
GTAAAAATGCAAGTTCTCTCACGGAAAGAATATCCTTTGAAAAATGGATT
TCCATCGACGTTGGAGACGCTTATCATCAATGGATGTGTTTTACAAAGAC
TAGATGCTCGAATTTTGAAACTATCTGCTCTCACTATTTTGGATTTGAGT
GAAAACAAATTGAAAACATTACCCGAATGTTTAGATGGGCTTAAAAGTTT
AAGGTGCTTGAATTTATCAAATAATGACTTTGATTGTTTTCCATGTTGCT
TACTACGGAGTGAAACTGCTGACAGGATTCACATTCTAGAAATGAACTTC
AATAAGATTTCATATCTTCCAAATAATATCGTCCGTTTAAAGAACCTTCA
TACCTTGAAGATAAAAGACAATCATTTAGTCTCTATCCCGCATTCATTTG
GAAATATGAAATCGTTGCAAAGGCTGGAATTGACCAATAATATGCTGCAA
TGTCTACCTTGGAGTTTTTTGAAGTTGAAATTCGATTTTCTTGATATTAG
TGGAAACGCATTCGGTGAAATGAATGTCGGTTTACTGGATGAGAAATATC
ATAAAGAACTTCCGGTGCCGTCAACACTGTTTGAAATTTGCTGCAGAAAG
ATTATTCAAACGGATACCAAGTAAAAAACTTTATTCTTTTAACTTGGCTA
AAACGTAATCCTTTTTACCTGAGGGCCTTTATATATGTGTCAACTCTGTA
TTTTTAATTTATTTTCTCCACGAGTTCTGCACCACGATTTAAGTTTCACA
GATAGATTTTGACCTTATGGCCAAAAACTTGTAGCTTGGGTTTCATATAC
AGGGAAAGCTACTTCAGTCTGCCGTTGAAACTATCTTGATTCTAACACTA
TTCATTGTTCTCGAATTTGAATTTCAGGTCGAAAGATTTGCAACGATTGC
CAACTTTATTGAAAGACATTCTCCGGTCACCGAAATATTGTCCTTGTGGG
ATGCCATGCGTCAATGAAGGGATCCCTTATGTGTTCTCGTACGATGTCTC
GCGGCTGACTCACGCCATGTCTTATAGTATGGAAAGAGACCACCTAAAGA
TATTGAATTATTTATGTTCTATGAAGTGTTATCAATCGTATTGCAAAGAC
CCTGTTCTTTTTCAAAGGCGCGGATTTTTGAAACGAAAATGAAACGTATT
TGTCATTATTTCACTGTTTTATTTTTAAGTACCATATTTTTGCAACCTTT
TAAAGAATATTCATTCATTGACTTCATCTTTCTCGAAGTTTTCAGGACTT
CGAAGGTAATCCCGGTAAAAACGTTTTTTGCAGCTCTATTTTTTTTTTAA
TATTTAAATTTTTGAAATTTTTCTGTTGCAATCTTTTAATCCCGCTGGTA
TACAGCTTAAGTCAACTTTTATATATTGAGACGTGGATGATGTAAAACTT
TTCGCGAAGTCAAAAAGTCGCGAAATTTAGCTAATTTAAGTTTCGTGAAT
TATGGTTTTAGCTGAAACTTCACAGATAGAACTTTCGCGAATTCATATAA
AATTTACCTTTTTTGGTAACAAAAACTATAAAATACGCAAAAATTTTGCA
AGCAGTGCAAAAATGAGTAGAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053447-exon-scaffold_231-1575043694:75004..77332 | TCONS_00053447-exon-scaffold_231-1575043694:75004..77332 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1575043694:74878..74933 | TCONS_00053447-exon-scaffold_231-1575043694:74878..74933 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1575043694:74476..74521 | TCONS_00053447-exon-scaffold_231-1575043694:74476..74521 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1575043694:73413..74161 | TCONS_00053447-exon-scaffold_231-1575043694:73413..74161 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1575043694:72457..73155 | TCONS_00053447-exon-scaffold_231-1575043694:72457..73155 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1510915933:75004..77332 | TCONS_00053447-exon-scaffold_231-1510915933:75004..77332 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1510915933:74878..74933 | TCONS_00053447-exon-scaffold_231-1510915933:74878..74933 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1510915933:74476..74521 | TCONS_00053447-exon-scaffold_231-1510915933:74476..74521 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1510915933:73413..74161 | TCONS_00053447-exon-scaffold_231-1510915933:73413..74161 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1510915933:72457..73155 | TCONS_00053447-exon-scaffold_231-1510915933:72457..73155 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1491911889:75004..77332 | TCONS_00053447-exon-scaffold_231-1491911889:75004..77332 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1491911889:74878..74933 | TCONS_00053447-exon-scaffold_231-1491911889:74878..74933 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1491911889:74476..74521 | TCONS_00053447-exon-scaffold_231-1491911889:74476..74521 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1491911889:73413..74161 | TCONS_00053447-exon-scaffold_231-1491911889:73413..74161 | Clytia hemisphaerica | exon |
| TCONS_00053447-exon-scaffold_231-1491911889:72457..73155 | TCONS_00053447-exon-scaffold_231-1491911889:72457..73155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_231 | supercontig | scaffold_231:72457..77332 - |
Blast
BLAST of TCONS_00053447 vs. Swiss-Prot (Human)
Match: LLR1 (Leucine-rich repeat protein 1 OS=Homo sapiens GN=LRR1 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 6.982e-33 Identity = 96/292 (32.88%), Postives = 140/292 (47.95%), Query Frame = 2
Query: 2531 VKKCDIEKPKVKMQVLSRKEYPLKNGFPSTLETLIINGCVLQRLDARILKLSALTILDLSENKLKTLPECLDGLKSLRCLNLSNNDFDCFPCCLLRSETADRIHILEMNFNKISYLPNNIVRLKNLHTLKIKDNHLVSIPHSFGNMKSLQRLELTNNMLQCLPWSFLKLKFDFLDISGNAFGEMNVGLLDEKYHKELPV-----PSTLFEICCRKIIQTDTKSKDLQRLPTLLKDILRSPKYCPCGMPCVNEGIPYVFSYDVSRLTHAMSY--SMERDHLKILNYLCSMKCY 3385
VK + E K KM + S+K+YPL FP +LE L + C L R+D R+L L +L LDLS N +K LP + L L+ LNL++N + F L S + L+++ NKI LP +L+ L LK+ DN L+ P G + +L+ L N L LP F L ++LD+ GN F + V LPV P TL E R I+ +P L L + K C CG C+N I + ++ + H + ++ I++Y CS+ CY
Sbjct: 126 VKTSEFENFKTKMVITSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSLRKLDLSHNHIKKLPATIGDLIHLQELNLNDNHLESFSVALCHSTLQKSLRSLDLSKNKIKALPVQFCQLQELKNLKLDDNELIQFPCKIGQLINLRFLSAARNKLPFLPSEFRNLSLEYLDLFGNTFEQPKV----------LPVIKLQAPLTLLESSARTILHNRIPYGS-HIIPFHLCQDLDTAKICVCGRFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISYFCSLGCY 406
The following BLAST results are available for this feature:
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