TCONS_00053428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053428
Unique NameTCONS_00053428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053428 ID=TCONS_00053428|Name=TCONS_00053428|organism=Clytia hemisphaerica|type=transcript|length=728bp
ATTTTCCTTGGCCTTTCTGTTaaataaaatgaagtaaaaaatccttcttc
ttaaaattttaaaaatacatcACAGATAAATCATTTAATATCGATGAAGA
ATCGATAAGAAAAATATACTCTATTGTCCGAACATCTCATTTGCTTTCAC
TCATACCCAGGCTCCCAAAATCGAAGAAGTAGATAAAATGGTTCTTTTTA
CTTGCTCATCGCTAACAGCCAGCACGTATCACACATCAAGATGCAAAACG
ATAGCGGTGAAGTTGTGGATCTCTACATCCCAAGAAAGTGCTCAGCCACC
AATACCTTGATCTCATCAAAAGACCATGCTTCAGTTCAACTGTCTGTTGC
TGAGGTTGACGATGAAGGCAGAATGACAGGTGGATTCAAAACCTTTGCAT
TTTCTGGCAAATTGAgatgtgctGCTGAATCTGATGATGCCCTCAATCAT
TTATGTCTCAAAGATGGAATTTTCCCAAAgaacTACAACATGAACTAGAA
GTGTACACCACACTGAATTGTACATAAGGAAATAAACATCTCGACTACAA
TTATATTGCATTCATCTTTTGTTCTACCCAGATTTGGACATTTTTTGCCT
GTATTGTTGTGTTGCAAAGGATTCTTAACTCTATTTGGCCTacggggctg
tttctgttcggaggtcaaattattggtaatacCTCCTGGAAATAGAGCTT
TTTccatgaaattttttgaaaattccta
Run BLAST on NCBI

transcript from alignment at scaffold_231:145846..153611+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053428 ID=TCONS_00053428|Name=TCONS_00053428|organism=Clytia hemisphaerica|type=transcript|length=7766bp|location=Sequence derived from alignment at scaffold_231:145846..153611+ (Clytia hemisphaerica)
ATTTTCCTTGGCCTTTCTGTTaaataaaatgaagtaaaaaatccttcttc
ttaaaattttaaaaatacatcACAGATAAATCATTTAATATCGATGAAGA
ATCGATAAGAAAAATATACTCTATTGTCCGAACATCTCATTTGCTTTCAC
TCATACCCAGGCTCCCAAAATCGAAGAAGTAGATAAAATGGTTCTTTTTA
CTTGCTCATCGCTAACAGCCAGCACGTGTAAGTAAATTTCAGAttgtatt
ttattattttgactCACCTAAAACTGTCTGGAAAACCATGGCAAACCTGT
TAGAattcttattttaattttttaccaGATCACACATCAAGATGCAAAAC
GATAGCGGTGAAGTTGTGGATCTCTACATCCCAAGAAAGTGGTAAGCATT
GCCAGTTTTTTTTAGAATGAAAGTTTGATTGAGGAAAATTTGTGCTAGTA
CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ctgcaagggtggtggtgtctgaagaaaatgtccaaaattgcagttactcc
acatagtgtcaaggagtaactgcaagacccccccctgATTTTAATCAAAA
GTCTTACTTTATAATACTTTTGATATCAATATTCTattgcaataaatatt
tttacaaaacgGATACTTTTAATAGTGCTACAGAAAATTGATCCCatcca
acacgaagcaaagtcgatatgtCACCCtacgattttttttgaaattttcg
taCATATAACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGACGAGAATCTTATCTGAT
ATTTTGATGAATTCAATCGAGCTTTTTAAAACTGAGTACTAGTATAAAGA
CCTAGTAAGCTTCAAATCTAATATCCCAGACaaccgcgctcgataggatc
gatcatcggaacggctcgatgacagattgatatgtgatcgatggattact
taacgatccggataggagaccgatagaggatcgatactgaagattttttc
aagcttatgattagttatcgaatatttatcaatctatcattaatcttatc
gaccctatcgacttaTGATCGATAACAAACCAGACCCCCGCGCTCGATAG
GATCGATCATCGGAACGGctcgatgacggatcgatatgtgatcgatggat
tacttatcgatccggataggagatcgatggaagattcggccattaaaaag
tcttgagtatcgatctttggttgatccattatcgagctagtatttcaatc
gagtatatcgattcgtcatcgatcgttaattgattcgtcatcgatcgtta
atcgattcgtcatcgatcgttaattgattcgtcatcgatcgttaattgat
tcgtcatcgatcgttaatcgattcgtcattgatcgttaatcgattcgtca
ttgatcgttaatcgagtatgcatcgattataaattgattatgcatcgatt
ataaaattaattagcagGTTGGGGACGCTTAttatattaggtacccgaga
gtaccatATCGGCCATTTTTAAGCCGGGCCCCTCCGCTTTTTTAAGTTCG
GAGCTAGGgctcaggcgaaattccgtaatctaaaccttccagcagATGTT
GAAAGTTTCCCCGACCTTTTCCCAGAGCTTTCTTAGCGtgtcgaaagaaa
atttctacatctgGTGCCAGATAAGTACCGATAAGTAAATCCGGTTTGAC
GACATTAGATCGATATGGATCGattaatcaatataaaaaaacggtcgata
ttttgattggatcgatagaggggtcgataggtaatcgataggtgtcgata
gggaatcgataggtgtcgataggtaatcgataggtgtcgatagggaatcg
atagcgagaaagatcgattaatattagagctcgctttttagaaagagtcg
atagggtcgataagatcgataaaagatcgatgatagatcgataactaatc
ataagcttaaaaaaatcttgagtatcgatcctctatcgatctcctatccg
gatcgataagtaatccatcgatcacatatcgatccgtcatcgagccgttc
cgatgatcgatcctatcgagcgtgGGGTCTGGAACAAATCGATTaatgat
cgatgacgaatcggtatactcaattgaaatactagctcgataatggatca
acgaaggatcgatattcaagacttttttaTGGCTGAATTTTCCAttgatc
tcctatccggatcgttaagtaatccatcgattacatatcgagccgttccg
atgatcgatcctatcgagcgcggacgtctggaatATCTTGTTCTTGCTGA
TCAAGTGCTTCCACTACTTGTGACCATTGACAGATTGAATTAAGCTTTGA
AATGCTCTTTTAACAGCACAGAACATTACCCTATATTTGATATAGGTGAG
ATTAATATCTTTGTTTTACAAGAGAAATGTGTAAAGCCTGGTTTACATTT
ACTGTGGTTGTTATTAAAGAGCGTGCGCCAATAGAGAAATTGGACGagct
aaaaaaattatataagatATAAAGCAGAACCCCTTAAAAACCTCCTGCAG
CTTTCTAGAAATTTGAataaccccctggaaacctGAAATAACTTATGTCT
GGCATAGAAAAACTCTAAAGGTAAAGGGTCCTCAACTATAAACTGATATG
CTTCAAACTCTCCCTATTTTAGCccaaatttttgaaacaaagtCTTACCT
CTATATGGAAGTATGCTGAACAGATCTCTGTCTAGAATTTTTCAGCTTAA
CAAAATAGGTGGTAATTATCTGGTTTTTCATGCACTGATGAATTGAAATA
TTCTGAATAACATGTTGACTTGCATATCGAGCTTTTTAAACCTGAGCATG
AATTAACTAATTTCACTTATGTGTGATACGGAATACGAGTGACATTTCAG
TGAACCTGTATGTCaagcttttttttttgcctACAGTCATTGGTTAATAT
TGAAAacaatgtttatcaaatttaCAGTTTTATTATAGCTCAGCCACCAA
TACCTTGATCTCATCAAAAGACCATGCTTCAGTTCAACTGTCTGTTGCTG
AGGtaatttttgttattattgaaattttgataacAGGTTAATGATGTTTA
ATTCTTCACTTTGAACTGATCCAATGTGATTGATATCTTTTCAACTCCTG
AAACCTGTTCTTATTTGAAATGGAACtacttttgttttatattttactta
aaaatataattcaaactCAAAACATCTCTTTTAGGTTGACGATGAAGGCA
GAATGACAGGTGGATTCAAAACCTTTGCATTTTCTGGCAAATTGAgatgt
gctgtaagaatatttaatGATTACAAAGTATTTTTATGGAATGGAAACTG
ATGATTAACTTGTTCATGCACCACTCAGACTTATGATGGTGATAAAAAGA
ACCATATAAGAATGAAGTTTCTTCAGTTTTGTCATTTATCATTTGGATCA
CCATATTATGTTCTGAAAGTTGTGATTAATTAGTTCATGCACCACTCATA
CTAATTTCGATTAGGATGGTGAAAAAAGAACATAATGAACTTTCTATATA
ATGCTTAATCGGGCAAATTGTACTAAAAAATTTAAGtgagaatttatttt
tgactggAAATTACATTCTCTTACTTGAGCTAAATCTTGAGTTCTTCTAT
TGAAGTAGTATGACCAGTGATGATTATTTACCTACATTGCCTGATATTAC
ATGATTTCACACGTAAATCTGAGGTCAATTCTATGTGTCTACTTACCTTA
AGTGGCTTTATTTTTACTTTGATTAatttaggggtcactcacatatcgat
ttttcCCACGCTTAGCGTCATTCCGACGCTAATAAAAAAACCCACCTACC
CTTAGCGCCATATTATGAAATAAACCGAAATTCGATGGAAATCTTTTTAC
CTTTCTCACTTCAAGTATTGATGTTCACTGCCCGAGAAGTTTCTTCCCCC
CTTTTGTTGGTACATTTTGTAGTGGTTTCGGTATATGACTTAAGCACAGT
TTGGTTCCCAGACCTGCATAAGTTATGACGCAGGGGAAAAGCCCCAAACT
TTTTAAACATCTAGCGTCTCCGGCATTTTACTATATTTTACTCAAAAAAC
CAATATCTCTAGTTGATTTTCTTAGCGTTGCTCAATCTAACCCACCCACC
CTATAGCATCGGAATGACGCTAAGCGTGGTAAAAATCAGTATGTGAGTGG
TCCCTTAATAATTCGATTTGGAAATTATTAACTCTAATATTGAAGCTCCA
TTTTGCAAAACTTTAAGAATAAATCATATTGTGAAAATTAGTCTACATAT
TCTAAAatttacacaaaaattaattaattcaCTTAAAGCTAGTTACCAGA
TTCTCAAAAGTTTAGGTACTATTTTGGAAATTATTggtttgaattgaaaa
ttttatcatattttcatttAGGCTGAATCTGATGATGCCCTCAATCATTT
ATGTCTCAAAGATGGAATTTTCCCAAAGTAAGTTGATCAATGTTGTTAAA
TTCCCCCAATACAGTCTGCAGTCCgttcatctgttgaaagaaTTGTAACC
AATGTAAATGTATTACGAATCGTTTTACCTGCTTATTTCTTGTCCCAGGG
TACCCTTACGATTCCCAACtagttttagaaaaataaaattttaaagggac
ataaaagtaataaaatgtaaacattgcgcaaaccacgtgtcattaaagag
aacaattaaaatcacgtgttcaaaacaaacttgtaaaacaattgaacaat
caaaattagccatatttggtttgattctttattttgacatgtgacatttg
ttttgattttgtatccgctgcatacagtttgtttacaaatttcgcaagta
ctgtcaTGTTCCTTTAAAGAAAACCTGGTTTACctcaatgggccattcca
ttttatatcccaACATGGGGTAGATGAAcatttccagaaaatgtccCAGG
TGTTAATTCATTTATTATTCGTTTATTTAAGGGATAAAGTGTTGCACTAA
AATTTCCAGGTGTAAAAGACTGGTTTTAGTTCATCCACCCTCGCTTAAAG
GTGTGAAAAAATCTTTCCGAGggtattttttgcaaactttgccgttttcc
agggggtatccacacattttcaatactTTCCTTGACttaaaggttcgtcc
accctcccccctgtatggttttggAACAGCCCATGCCTTAATggttaaaa
tttatttattttttcaggaacTACAACATGAACTAGAAGTGTACACCACA
CTGAATTGTACATAAGGAAATAAACATCTCGACTACAATTATATTGCATT
CATCTTTTGTTCTACCCAGATTTGGACATTTTTTGCCTGTATTGTTGTGT
TGCAAAGGATTCTTAACTCTATTTGGCCTacggggctgtttctgttcgga
ggtcaaattattggtaatacCTCCTGGAAATAGAGCTTTTTccatgaaat
tttttgaaaattccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033732XLOC_033732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053428-exon-scaffold_231-1491911889:145846..146072TCONS_00053428-exon-scaffold_231-1491911889:145846..146072Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:145846..146072TCONS_00053428-exon-scaffold_231-1510915933:145846..146072Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:145846..146072TCONS_00053428-exon-scaffold_231-1575043694:145846..146072Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1491911889:146174..146236TCONS_00053428-exon-scaffold_231-1491911889:146174..146236Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:146174..146236TCONS_00053428-exon-scaffold_231-1510915933:146174..146236Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:146174..146236TCONS_00053428-exon-scaffold_231-1575043694:146174..146236Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1491911889:151134..151197TCONS_00053428-exon-scaffold_231-1491911889:151134..151197Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:151134..151197TCONS_00053428-exon-scaffold_231-1510915933:151134..151197Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:151134..151197TCONS_00053428-exon-scaffold_231-1575043694:151134..151197Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1491911889:151380..151448TCONS_00053428-exon-scaffold_231-1491911889:151380..151448Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:151380..151448TCONS_00053428-exon-scaffold_231-1510915933:151380..151448Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:151380..151448TCONS_00053428-exon-scaffold_231-1575043694:151380..151448Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1491911889:152567..152622TCONS_00053428-exon-scaffold_231-1491911889:152567..152622Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:152567..152622TCONS_00053428-exon-scaffold_231-1510915933:152567..152622Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:152567..152622TCONS_00053428-exon-scaffold_231-1575043694:152567..152622Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1491911889:153363..153611TCONS_00053428-exon-scaffold_231-1491911889:153363..153611Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1510915933:153363..153611TCONS_00053428-exon-scaffold_231-1510915933:153363..153611Clytia hemisphaericaexon
TCONS_00053428-exon-scaffold_231-1575043694:153363..153611TCONS_00053428-exon-scaffold_231-1575043694:153363..153611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_231supercontigscaffold_231:145846..153611 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
441.033	472.817	517.393	679.135	193.741	195.889	197.737	256.679	789.684	818.687	918.514	1193.07	1512.15	1439.15	1189.48	1091.03	1264.26	1221.82	785.207	924.313	1585.41	1481.98	1085.2	1050.89	508.576	499.094	1823.61	1898.31	831.531	888.325
Blast
[Close]
BLAST of TCONS_00053428 vs. Swiss-Prot (Human)
Match: RS21 (40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.250e-27
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:  241 MQNDSGEVVDLYIPRKCSATNTLISSKDHASVQLSVAEVDD-EGRMTGGFKTFAFSGKLRCAAESDDALNHLCLKDGIFPKNY 486
            MQND+GE VDLY+PRKCSA+N +I +KDHAS+Q++VAEVD   GR  G FKT+A  G +R   ESDD++  L   DGI  KN+
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
The following BLAST results are available for this feature:
BLAST of TCONS_00053428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS214.250e-2757.8340S ribosomal protein S21 OS=Homo sapiens GN=RPS21... [more]
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