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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053415 ID=TCONS_00053415|Name=TCONS_00053415|organism=Clytia hemisphaerica|type=transcript|length=695bp
ggtagatccagccttacatagactttatccagtctagaagcaaaaatcgg
aggaaaatttcggtaaaactaaattaaattgattttgatgaagattgtAA
ACCCTTTcaacccttcagtttcaaaatttttgtattttgttacTGCTCAA
CGGGAATAAGGGTCCATGTTTACGATTTTTGAAAGACCTGTTTTCCGATA
CCTGGCGGGGCGAAGTTGCGGGATGAAGTTCTATCGCTGGCCTTACTGAC
CGCGGATTTTTAATCGGGGCCGCAAATTATACACATTAGGTCCGTGTGAC
CAgtcatcgaaaaaaaaattccgtgAATTTTTTCAACCAGTCTTTCATTT
TCATATGGAAGAGAATTTGCAGAAACACTTTTGGACAAGGAAGGTCAAGA
TGGCGACGAAAATTTATCTGTACGGATTTGAACATCTACCTAATTTCACA
ATCCTCTTGCTTCGTATGCATAAATACACTGGTGATTGAAGTTAAAACAT
TTGGAACATTCAATTTTGTCAACTGGCGTTTATTTGACTTGTCAGATGAA
TAGGATTCTTGAAGATTTGCAATTAAAGGCAAAAGAGAGCTAGAACATCA
TCAGGACTCTACAAAGTGATGTTTACAGAACAGAAATTTGGATGATCTTg
caaaaagaagaacaaaaccTCCATCATTGAACAAATAACGTAAAG Run BLAST on NCBI transcript from alignment at scaffold_230:48057..51340- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053415 ID=TCONS_00053415|Name=TCONS_00053415|organism=Clytia hemisphaerica|type=transcript|length=3284bp|location=Sequence derived from alignment at scaffold_230:48057..51340- (Clytia hemisphaerica)
GGTAGATCCAGCCTTACATAGACTTTATCCAGTCTAGAAGCAAAAATCGG
AGGAAAATTTCGGTAAAACTAAATTAAATTGATTTTGATGAAGATTGTAA
ACCCTTTCAACCCTTCAGTTTCAAAATTTTTGTATTTTGTTACTGCTCAA
CGGGAATAAGGGTCCATGTTTACGATTTTTGAAAGACCTGTTTTCCGATA
CCTGGCGGGGCGAAGTTGCGGGATGAAGTTCTATCGCTGGCCTTACTGAC
CGCGGATTTTTAATCGGGGCCGCAAATTATACACATTAGGTCCGTGTGAC
CAGTCATCGAAAAAAAAATTCCGTGAATTTTTTCAACCAGTCTTTCATTT
TCATATGGAAGAGAATTTGCAGAAACACTTTTGGACAAGGAAGGTCAAGA
TGGCGACGAAAATTTATCTGTACGGATTTGAACATCTACCTAATTTCACA
ATCCTCTTGCTTCGTATGCATAAATACACTGGTGATTGAAGTTAAAACAT
TTGGAACATTCAATTTTGTCAACTGGCGTTTATTTGACTTGTCAGATGAA
TAGGATTCTTGAAGATTTGCAATTAAAGGCAAAAGAGAGCTAGAACATCA
TCAGGTAAAGGTACATATTTTTTAGTTGGTTTGTGTTTTACGCTCCTATT
AAGTCGATTTACTCCTCAAAACTTAAGGTAAATTTTGTGTCTGTTGTGTT
TTTTGATAGTTGACTTTCAAGCCTTTGTCCTGCTTTGTCAGCAAGCTGCT
GAAATTCATGTTTAAATATAGTAACAATAGGTACTGTAGTAGGGAAAGAT
AAAATTCAAATATAATATACCTTTTCAAAAGTTAGATGGATTTCAGTAAC
ACTTCATTACTTATTTTTAATTCATACACCACATGAGGTTTTATTCTTTT
AACTGGAATAACCCAATTATTTTACTTCCTTTTGGCCGAGCTCCTCTAAT
CCGATACATACAATTATACAAACCAGGCATAGTTAATCGAGATAATTGAT
AATCGGCTGTCATCAATAAGTAATTGATGGATTAGATATTGATTATCCGA
TATAATCGATCAGACCTTCAAAAGATCTAAGTATCAGATCAACAATTATT
TAATTCCAAGGTATCGATTATTTATTGATTGAACCCAGATGGCTGTAACC
CATAAAATTGATCATCGATTTCCAGACGGTGTCAATCGAACAACTTCGAA
CAAAAATCGCAATCGAACGTAATCGAACGCGATCGAACAATTGCGATTCG
ATTGTCGAACGTAATCGAATCTCAATCGAACGGCCGATTCCTGGGTAATA
TTCGATTGTATTCGATTGCGTTTGAGTAAGGTTAGATTGGTTCGATTGAT
AGTTGAACTATGTTCGATTGTCATTTGCATTCGAATAATCTTTGATTTCG
TTCGATTAGGATTATGTTTGATGAGTTTGATTAAATTAAATTGGATCACT
CCTTTAGGGCTTTTTAGCGGGCGACCGAGTGCTTAAGTACCGTACCAAAG
TGAATAAAATCTAATATAATTGAATCAATCGAATACCATCGAACGTAATC
GAAGCAATCGAACAGCAAACCCTGGGTAATATTCGATTGCGATTCGATTA
CGTTCGACAATCGAATTGCAATTATTCGATTGAGTTCAATTGATTCGGCG
TTTGATTCGTTCGATTGACACCGTCTGGCGATTTAAATAGTTGTTTGGAA
GGGATGATCTATTGAATTTAACAAATTACTCCAGCCTGTCAAACGGTATA
AATATCTTGCACCTAGGTCCAGGCAGGCGGTTCGTTATCGAACCATCAAA
CTTTGTCGAACAAAATTGAACGATAGCTCGATTATCGAACCCGATAGCTA
CATATCGAACTTTACGAAAATTTCTTGATAAGTTCGATTTAGTTCGATGA
GTGTTCGTTGTTCGATCGATGAAAGTTCGATATGGTTCAATGATTGTTTC
GGATTGATTCTACTTTCCTTTACCTTACAGAAAATTACGAGGTTGTTTAA
TCAAAACACAGGCACCGTATGCTTCACTCATTATTGCTCATTTGAAATAA
TGCTTGACAAATCGACAAAAAACTTTGTTATATACAACAAATTGGCAAAT
TAATAGTCCTTTCGATAAAGTTTAATTTCTTAAAAATCAAACTTTTAATC
AAACTCTATATTTTTAATCATTTGAGTATTATTTGATTAAAGTTCAGAGC
CTCTGTCAGCTTTGTTGCTGTAAATATTCAAACGCTGTTCATTTTATAAA
AAGAAGCTAATTTCTGAACTTTTTCACAGAAATCTCTCCGTAATATATCG
CTGCAAAACAAACCGGCCGTCTGCAAAAATACAAGAGTCGTGCAGCCCTG
ATTAAAGTTTGACAACCAAACTTATATTCAGTTATCGATTAAAACAAGGG
ACATAAAAGTACTGAAATTTGTAAAGAAACCGTATGTAGCGGGTGGGCAC
TTGATTTTAATTGTTCTCTTTAATGACACGTGGTCCACGCAATGTTTACC
TTTTACTACTTTTATGTCCCTTTAAAATCTATAATTGATAGCTATTTCTA
TATTCACAATTTTTAACCTCAATTAGCTATCGATACAATCGATGCGATCG
ATTAGTTATCAAAATGTCCTCGATAATTAATAAATTAAATGATATCTAAT
CCGTTAATTAGTTATTGCTCACAGCCTATTATCAATTAACTACGCCTGGT
ACAAACTTTTGATTAACGTTGTTTAGGAAAAGAAGACGTCTATTGAATAA
CAGATTACTCCAGCATAAATAACTCCAGACATCATAATTAATCAAAACAA
TGAAACTGTGTACTTTAAATTGAACTTTGTCCAACTTAATCAAACTTTGT
TGTCCAAATTAATGGAACAGAATCTTTTGCTGAATTTGTCAAACATTTCT
TGTTGACGAACTTTGTCAAACAGGTTTTTTTGTTGAATATGTTGAAGGTT
TTGATAAACGTANACAAACTTTATCAAACAGGTTTTTTTGTTGAATATGT
TTAAGGTTTTGATAAACGTAACGTTATGTTGAATCTAGACATAATTAATG
GAATAGTTTGATTACCAAACCTTGTCAAACTTAATTAAACAACAAAAAAT
CACAAACTTTTCAAAAGTGGTTAAAATTGTGAGTAATTAGTTGTTCAATA
GAACAATATGATATAATGAAATTTTTTATCATTTCATTAACAGGACTCTA
CAAAGTGATGTTTACAGAACAGAAATTTGGATGATCTTGCAAAAAGAAGA
ACAAAACCTCCATCATTGAACAAATAACGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053415-exon-scaffold_230-1575043694:50737..51340 | TCONS_00053415-exon-scaffold_230-1575043694:50737..51340 | Clytia hemisphaerica | exon |
| TCONS_00053415-exon-scaffold_230-1575043694:48057..48147 | TCONS_00053415-exon-scaffold_230-1575043694:48057..48147 | Clytia hemisphaerica | exon |
| TCONS_00053415-exon-scaffold_230-1510915933:50737..51340 | TCONS_00053415-exon-scaffold_230-1510915933:50737..51340 | Clytia hemisphaerica | exon |
| TCONS_00053415-exon-scaffold_230-1510915933:48057..48147 | TCONS_00053415-exon-scaffold_230-1510915933:48057..48147 | Clytia hemisphaerica | exon |
| TCONS_00053415-exon-scaffold_230-1491911889:50737..51340 | TCONS_00053415-exon-scaffold_230-1491911889:50737..51340 | Clytia hemisphaerica | exon |
| TCONS_00053415-exon-scaffold_230-1491911889:48057..48147 | TCONS_00053415-exon-scaffold_230-1491911889:48057..48147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_230 | supercontig | scaffold_230:48057..51340 - |
Blast
The following BLAST results are available for this feature:
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