TCONS_00053413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053413
Unique NameTCONS_00053413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053413 ID=TCONS_00053413|Name=TCONS_00053413|organism=Clytia hemisphaerica|type=transcript|length=676bp
CTTTTCATCATTAGAACCATCAAAAATACAAACAGAACTTTCCCATAAAT
CCAATCCATCATTTGAAGGTTCTAAAATTTCACTTGGGTATTTCAAGTCC
TCGAATCCACGTTTGAACGATGCTTgtgaaaaaaataatgctttGCTCAA
ATATTTCTTCCTGTTAGCTACAATGTATTCCATTCAAATTCCAATTTATA
TGAAAAATTTCACGTTTGATCAAATCTGGTCTCATAAATTACCGGTCATT
GCAcgcaatttcatattttataagACCACCATCATCATATCGAATGTATA
TTTGCTTTTGAGTTTACATCAGTTATTGAGTAAAGGGAAAAAATCCTGAC
ACTTCAAatctattttctttctcacTCTCAAGTGAGAGACATTCTAGGAC
AATCTCAGCAGGTGGTACCAAGCGCCGTCGTTTTTATAATATaccctctt
ctttcttttcttcttctttatatatttattatttttaatcaaCTCAACTC
CACTCTTCTCTTCGTATCTTTCATATATCCATTCGTGGTTTTCAAATCCC
AATAGAATAAGATTATGATTTCCAATccttgttttcttctttttcccttc
tttattttacaattttaataCTGTTATAGGTTTTCTATCGAacgaaaata
atgttttttagATCGTCTTGTTATCT
Run BLAST on NCBI

protein sequence of TCONS_00053413-protein

>TCONS_00053413-protein ID=TCONS_00053413-protein|Name=TCONS_00053413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
FSSLEPSKIQTELSHKSNPSFEGSKISLGYFKSSNPRLNDACEKNNALLK
YFFLLATMYSIQIPIYMKNFTFDQIWSHKLPVIARNFIFYKTTIIISNVY
LLLSLHQLLSKGKKS
Run BLAST on NCBI

transcript from alignment at scaffold_23:145559..146234

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053413 ID=TCONS_00053413|Name=TCONS_00053413|organism=Clytia hemisphaerica|type=transcript|length=676bp|location=Sequence derived from alignment at scaffold_23:145559..146234 (Clytia hemisphaerica)
AGATAACAAGACGATctaaaaaacattattttcgtTCGATAGAAAACCTA
TAACAGtattaaaattgtaaaataaagaagggaaaaagaagaaaacaagg
ATTGGAAATCATAATCTTATTCTATTGGGATTTGAAAACCACGAATGGAT
ATATGAAAGATACGAAGAGAAGAGTGGAGTTGAGttgattaaaaataata
aatatataaagaagaagaaaagaaagaagagggtATATTATAAAAACGAC
GGCGCTTGGTACCACCTGCTGAGATTGTCCTAGAATGTCTCTCACTTGAG
AgtgagaaagaaaatagatTTGAAGTGTCAGGATTTTTTCCCTTTACTCA
ATAACTGATGTAAACTCAAAAGCAAATATACATTCGATATGATGATGGTG
GTcttataaaatatgaaattgcgTGCAATGACCGGTAATTTATGAGACCA
GATTTGATCAAACGTGAAATTTTTCATATAAATTGGAATTTGAATGGAAT
ACATTGTAGCTAACAGGAAGAAATATTTGAGCaaagcattatttttttca
cAAGCATCGTTCAAACGTGGATTCGAGGACTTGAAATACCCAAGTGAAAT
TTTAGAACCTTCAAATGATGGATTGGATTTATGGGAAAGTTCTGTTTGTA
TTTTTGATGGTTCTAATGATGAAAAG

Coding sequence (CDS) from alignment at scaffold_23:145559..146234

>TCONS_00053413 ID=TCONS_00053413|Name=TCONS_00053413|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_23:145559..146234 (Clytia hemisphaerica)
TCAGGATTTTTTCCCTTTACTCAATAACTGATGTAAACTCAAAAGCAAAT
ATACATTCGATATGATGATGGTGGTcttataaaatatgaaattgcgTGCA
ATGACCGGTAATTTATGAGACCAGATTTGATCAAACGTGAAATTTTTCAT
ATAAATTGGAATTTGAATGGAATACATTGTAGCTAACAGGAAGAAATATT
TGAGCaaagcattatttttttcacAAGCATCGTTCAAACGTGGATTCGAG
GACTTGAAATACCCAAGTGAAATTTTAGAACCTTCAAATGATGGATTGGA
TTTATGGGAAAGTTCTGTTTGTATTTTTGATGGTTCTAATGATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033720XLOC_033720Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053413-proteinTCONS_00053413-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053413-exon-scaffold_23-1491911889:145559..146234TCONS_00053413-exon-scaffold_23-1491911889:145559..146234Clytia hemisphaericaexon
TCONS_00053413-exon-scaffold_23-1510915933:145559..146234TCONS_00053413-exon-scaffold_23-1510915933:145559..146234Clytia hemisphaericaexon
TCONS_00053413-exon-scaffold_23-1575043694:145559..146234TCONS_00053413-exon-scaffold_23-1575043694:145559..146234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:145559..146234 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.455817	0.0740822	0.688132	0.336615	0	0.161913	3.41848	2.65171	2.94483	2.93398	3.61746	2.78274	0.454724	0.944471	0.301966	0.462937	0.34218	0.409177	1.77666	1.01408	1.68939	2.25711	1.04526	0.633529	0.815651	1.23751	0.416677	0.333517	0.16864	0.0859089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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