TCONS_00053360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053360
Unique NameTCONS_00053360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053360 ID=TCONS_00053360|Name=TCONS_00053360|organism=Clytia hemisphaerica|type=transcript|length=490bp
GTGCTTTATAGCCATACTAAGAGTTTTCAAAGCCTCGTGGTTATCAAGGG
GTACCCAATGTAGGTAGTAATCCCCACTATCGGTACCATCTGTCGAATAT
ATTCCgttgaaatttaaaagagtACATTGCTTAAACCATCCACCTGATTT
CCTTGTCTTTGCACAATGTTTACCATTTGAGTTGTCATTGTCGATTTCTG
GTGTTGAAAAATAGCATTGGTTCATTCTAGACCAGGAATTACAATAAGTG
TATCCGGTATCGCCGTTAAAATATACTGATGTTTTTTCTATGCATTCTCC
AGTAGTCAGCctatatttttcactttcactGGCAACTTTGAAACCTCTGA
AAATGACATAAGCATGGTTACCGTTAAATGATTCTGCTTCGATTTTGATC
AGCATCTGATCGATGTTCTTAGTCATATGGTGCATGGCATCAAGACCAAG
CCAATAATTAGATGATGGGTTACCGAACCCGTTTTTGTAG
Run BLAST on NCBI

protein sequence of TCONS_00053360-protein

>TCONS_00053360-protein ID=TCONS_00053360-protein|Name=TCONS_00053360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
YKNGFGNPSSNYWLGLDAMHHMTKNIDQMLIKIEAESFNGNHAYVIFRGF
KVASESEKYRLTTGECIEKTSVYFNGDTGYTYCNSWSRMNQCYFSTPEID
NDNSNGKHCAKTRKSGGWFKQCTLLNFNGIYSTDGTDSGDYYLHWVPLDN
HEALKTLSMAIKH
Run BLAST on NCBI

transcript from alignment at scaffold_228:169710..170199

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053360 ID=TCONS_00053360|Name=TCONS_00053360|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at scaffold_228:169710..170199 (Clytia hemisphaerica)
CTACAAAAACGGGTTCGGTAACCCATCATCTAATTATTGGCTTGGTCTTG
ATGCCATGCACCATATGACTAAGAACATCGATCAGATGCTGATCAAAATC
GAAGCAGAATCATTTAACGGTAACCATGCTTATGTCATTTTCAGAGGTTT
CAAAGTTGCCagtgaaagtgaaaaatatagGCTGACTACTGGAGAATGCA
TAGAAAAAACATCAGTATATTTTAACGGCGATACCGGATACACTTATTGT
AATTCCTGGTCTAGAATGAACCAATGCTATTTTTCAACACCAGAAATCGA
CAATGACAACTCAAATGGTAAACATTGTGCAAAGACAAGGAAATCAGGTG
GATGGTTTAAGCAATGTactcttttaaatttcaacGGAATATATTCGACA
GATGGTACCGATAGTGGGGATTACTACCTACATTGGGTACCCCTTGATAA
CCACGAGGCTTTGAAAACTCTTAGTATGGCTATAAAGCAC

Coding sequence (CDS) from alignment at scaffold_228:169710..170199

>TCONS_00053360 ID=TCONS_00053360|Name=TCONS_00053360|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_228:169710..170199 (Clytia hemisphaerica)
TACAAAAACGGGTTCGGTAACCCATCATCTAATTATTGGCTTGGTCTTGA
TGCCATGCACCATATGACTAAGAACATCGATCAGATGCTGATCAAAATCG
AAGCAGAATCATTTAACGGTAACCATGCTTATGTCATTTTCAGAGGTTTC
AAAGTTGCCagtgaaagtgaaaaatatagGCTGACTACTGGAGAATGCAT
AGAAAAAACATCAGTATATTTTAACGGCGATACCGGATACACTTATTGTA
ATTCCTGGTCTAGAATGAACCAATGCTATTTTTCAACACCAGAAATCGAC
AATGACAACTCAAATGGTAAACATTGTGCAAAGACAAGGAAATCAGGTGG
ATGGTTTAAGCAATGTactcttttaaatttcaacGGAATATATTCGACAG
ATGGTACCGATAGTGGGGATTACTACCTACATTGGGTACCCCTTGATAAC
CACGAGGCTTTGAAAACTCTTAGTATGGCTATAAAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033674XLOC_033674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053360-exon-scaffold_228-1491911889:169710..170199TCONS_00053360-exon-scaffold_228-1491911889:169710..170199Clytia hemisphaericaexon
TCONS_00053360-exon-scaffold_228-1510915933:169710..170199TCONS_00053360-exon-scaffold_228-1510915933:169710..170199Clytia hemisphaericaexon
TCONS_00053360-exon-scaffold_228-1575043694:169710..170199TCONS_00053360-exon-scaffold_228-1575043694:169710..170199Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053360-proteinTCONS_00053360-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:169710..170199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252511	0.369356	0.142953	0	0	0.134544	0	0	0	0	0	0	0.167937	0.174404	0.0716919	0	0.189559	0.194292	1.20791	0.702217	0.122071	0	0.868571	1.3161	0.948883	1.45175	0	0	0.280267	0.142774
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00053360 vs. Swiss-Prot (Human)
Match: TENN (Tenascin-N OS=Homo sapiens GN=TNN PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.046e-18
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = -2 
Query:   34 YKNGFGNPSSNYWLGLDAMHHMTKNID-QMLIKIEAESFNGNHAYVIFRGFKVASESEKYRLTTGECIEKTSVYFNGDTG--YTYCNSWSRMNQCYFSTPEIDNDNSNGKHCAKTRKSGGWFKQCTLLNFNGIYSTDGTDSGDYYLHWVPLDNHE 489
            Y  GFG+P   +WLGLD +H++T     +  ++++ ++ N   AY I+  F+VAS  E+Y+LT G+        + G  G   TY N W       F+T + DND +   +CA T   G W+K C L N NG Y       G   ++W P   HE
Sbjct: 1129 YVEGFGDPMKEFWLGLDKLHNLTTGTPARYEVRVDLQTAN-ESAYAIYDFFQVASSKERYKLTVGK--------YRGTAGDALTYHNGWK------FTTFDRDNDIAL-SNCALTHHGGWWYKNCHLANPNGRYGETKHSEG---VNWEPWKGHE 1264
The following BLAST results are available for this feature:
BLAST of TCONS_00053360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENN2.046e-1834.19Tenascin-N OS=Homo sapiens GN=TNN PE=1 SV=2[more]
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