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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053352 ID=TCONS_00053352|Name=TCONS_00053352|organism=Clytia hemisphaerica|type=transcript|length=588bp
TAAAGTTATTCAAGTCAAAAGCAGCAAACGATTCGTTGAAGAGAAGAAGA
ATAACATCGCTTTTATTTCCACTTGCTACCAGATAAGGTGAACGATGTTC
AAGTCAAATTTGGTGATGTTGGTGATTTGCTTTTATCTCGTATTTGCAAT
GATGCAAACAGAAGCAATGCAAGATTGTACCGTTCAACAATTGAGTCCTT
CGTGCACACCAGAAGACATCGCGGCAGCTTCGTGTGGACATTGTTATGAC
TCTGATCAATTTCAATTCGCATTGTTTTGGAATCAGTGCTGGTGTCTGCA
TCAACCACCACAGCACCCAATGCCTTGAGAAGATGTTCCGTCACCAGGAA
GGCTACTGTGTTAACAAGCTCCTTGGTGTCTAAAAGCTTTAATATTTCAG
TGGGATGGAGTGGTTTGAAATTTAATGAAGAGCTGAAACGTTATTTATTA
CGGCTTCTTCTGATAGAATTGTCGCAGAGGATACTGCCCGTTTTGTTTAT
ATCAATATTACATTATTTATAGCATGGTatttattatttcaaatatGCAG
CTTATTTTAaccaaaattaatttaaagGCAAGATCGAC Run BLAST on NCBI transcript from alignment at scaffold_228:725515..727142- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053352 ID=TCONS_00053352|Name=TCONS_00053352|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at scaffold_228:725515..727142- (Clytia hemisphaerica)
TAAAGTTATTCAAGTCAAAAGCAGCAAACGATTCGTTGAAGAGAAGAAGA
ATAACATCGCTTTTATTTCCACTTGCTACCAGATAAGGTGGGTGTTTTTA
TTTGATTTCTGTTCGAGGGTTGTGTGGGCTGATCGAGATTATAATCTGCA
GCGAAGACACAAAAGGCTTTAACTTTTCATAAAATTCGAATTAAATAGCG
ATTTTATGTTTGTTGAAAAGATATTCAAGAGTTGAAATATGAAAATGAAG
AAGAAAAAATCTACTTTTTGTATAATTGTCCTATGATCTTCATTTTCATA
ATTAAAAATATCGAGATAGACTTGAGTAGACTCTTTGGTGATTCAAAATT
CTTTTATCTATTATAAGTAATTGTGATTTTATATAACGTGTTTTCCCCAA
ATTTGAGTTGTTTTTTAATAAGCGCCAAAGTTTGACTACAAAAAGTATAA
AATTATTGACCTTGCTTTATCAAATTTTTTATGAATTGTTCTTCAATAGA
TTTTTATCTCACTTTTTTGCAGGTGAACGATGTTCAAGTCAAATTTGGTG
ATGTTGGTGATTTGCTTTTATCTCGTATTTGCAATGATGGTATGTAAATT
TGTTTATTAGTCTGAGTAATATTTTTTTGAAATGTAGTTCTGTTGAAGAT
TCCAGATCTAAAAAATCGACCAATAGAATACCAGTCTTGTTCATGGTTCT
ATACTATGCTCAGCTGTAACAATTGACCATATAAACTCACTGGCTGCATC
CCTTCTCAAAGATCCACTGCGATCCCTTCCCACTGGAAAAATATCGTCCA
CGATGGAAAATTGTCCTCCAATTTTTGCTTCCACTGAAAGTAATCAAATA
AACCAATCATCACTGCAAAATATTTACTATTTTTCCCATCCCCACTGAAT
TTTCTGACTTGAAAACAAAAGAATTAAAATCCCCAGCCATAAAAAATATG
GGAATATCAATCCACATCACGTTCAGTCCCACCGGGTCTGTGAGAGGGGG
TTGTGCGAGGCAACCTTTCTTTATCGAAAAAGTCATCAATAAGAAACTCC
CTCACTAGCAAAACCCAATAAGCAAAAATGCTTGGAACAAGAGCACTCGC
AACATTACCTCTAATAATGTACCAACATTCAGACTACCTAAGTATTGTCT
TTGTCTGCAATATTTTAACCACGAGTTGTTTCAATTTCTTACAGCAAACA
GAAGCAATGCAAGATTGTACCGTTCAACAATTGAGTCCTTCGTGCACACC
AGAAGACATCGCGGCAGCTTCGTGTGGACATTGTTATGACTCTGATCAAT
TTCAATTCGCATTGTTTTGGAATCAGTGCTGGTGTCTGCATCAACCACCA
CAGCACCCAATGCCTTGAGAAGATGTTCCGTCACCAGGAAGGCTACTGTG
TTAACAAGCTCCTTGGTGTCTAAAAGCTTTAATATTTCAGTGGGATGGAG
TGGTTTGAAATTTAATGAAGAGCTGAAACGTTATTTATTACGGCTTCTTC
TGATAGAATTGTCGCAGAGGATACTGCCCGTTTTGTTTATATCAATATTA
CATTATTTATAGCATGGTATTTATTATTTCAAATATGCAGCTTATTTTAA
CCAAAATTAATTTAAAGGCAAGATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053352-exon-scaffold_228-1575043694:727056..727142 | TCONS_00053352-exon-scaffold_228-1575043694:727056..727142 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1575043694:726554..726620 | TCONS_00053352-exon-scaffold_228-1575043694:726554..726620 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1575043694:725515..725948 | TCONS_00053352-exon-scaffold_228-1575043694:725515..725948 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1510915933:727056..727142 | TCONS_00053352-exon-scaffold_228-1510915933:727056..727142 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1510915933:726554..726620 | TCONS_00053352-exon-scaffold_228-1510915933:726554..726620 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1510915933:725515..725948 | TCONS_00053352-exon-scaffold_228-1510915933:725515..725948 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1491911889:727056..727142 | TCONS_00053352-exon-scaffold_228-1491911889:727056..727142 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1491911889:726554..726620 | TCONS_00053352-exon-scaffold_228-1491911889:726554..726620 | Clytia hemisphaerica | exon |
| TCONS_00053352-exon-scaffold_228-1491911889:725515..725948 | TCONS_00053352-exon-scaffold_228-1491911889:725515..725948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:725515..727142 - |
Blast
The following BLAST results are available for this feature:
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