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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053330 ID=TCONS_00053330|Name=TCONS_00053330|organism=Clytia hemisphaerica|type=transcript|length=830bp
CCTGAAAACAGACATGGAATCGCACCGTTAACCATCATAAATCATGATGA
AGAAATAAAACGTAGCACCGTCAAAGCCGTCATCCCAAGAATGTCAATTG
AATGGTCCATTAGATTAACTCTTCAAATTACCGGCATTAATCAACCTAAA
GATTGGTGCAATGTTATTCATTTGACAGAAGACTCGGATTCCGACCGTTT
GCCTagtttatttttcaatgaatGGATCAATCAACTTCGAATCTATTTTC
CAGGCAGAGATCAATCATGGCCATACGAAACCACACTTTCCCTTCACACA
AACTACACCATAGAGATTCACCAAAGATATAAAAGCGGTGGTAAATATCA
ATTCATTGCCACAGTTAATGGTGATGAGATTGTCAACGTTGAAAGTCCAC
AAGCAGCATCTGTACAACGTTATGATGTGAAAATCTATGCTAGCAATCCT
TGGTTTGCTTCCTGCATTGGTATAATCAAAGATTTCAGATTCACAAATTT
TctataaagaactttttcagTACTTCCCAGCTAAATCTCCTTCATTTATG
AACGATTCTTTCGCAGTCGGTAAGTTTGATCGAGGAGGCCCCAAACGGTT
TTCGTGATTGTGGGATTGGCGTTTTTCAAGCTTgcaatttcgtgattttt
aaaactttaaagtgcATGATTGCGTGATCGGAGGAACTCCCCTGGAGGAA
ccaacgtgatcgtgatagaaaggaaatttaactcgtgataacgtgatttg
gaatttttttgcgtgatttgaaaggtgactgggGGAATGGGGGCCTCATT
GAGGACCttaattaagaaaaaaatgaaaag Run BLAST on NCBI protein sequence of TCONS_00053330-protein >TCONS_00053330-protein ID=TCONS_00053330-protein|Name=TCONS_00053330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
PENRHGIAPLTIINHDEEIKRSTVKAVIPRMSIEWSIRLTLQITGINQPK
DWCNVIHLTEDSDSDRLPSLFFNEWINQLRIYFPGRDQSWPYETTLSLHT
NYTIEIHQRYKSGGKYQFIATVNGDEIVNVESPQAASVQRYDVKIYASNP
WFASCIGIIKDFRFTNFL Run BLAST on NCBI transcript from alignment at scaffold_228:345169..348218- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053330 ID=TCONS_00053330|Name=TCONS_00053330|organism=Clytia hemisphaerica|type=transcript|length=3050bp|location=Sequence derived from alignment at scaffold_228:345169..348218- (Clytia hemisphaerica)
CCTGAAAACAGACATGGAATCGCACCGTTAACCATCATAAATCATGGTGA
GTTTTTGGTGCCAACTGTTCAAGTCCAACCTCGTGCCCATGGAGTAGAAT
GTCCCAGGTGCAGAATTACTTAAGATATGGTTTGTTTGGTACTAAAGATT
TGAATAGACGATATCGGCTTTGCGAATTCTCCCCGAATGATTAACCATGA
TTCATTGCGCAAAAAATTCACGGAAAGTCAATATCGTCCGTGAATTTTTT
TGCGCAATGCACCATGGGTAATCATTCGGGAAGAATTTGCAAAGCCGATA
TCGTCTATTAGAATTGGATCTTGTCAAAATATTATAAGCATAGGGGAGAC
GTCTATTAAAGAGAGTTTTTAAGCAGGCTGTAATAGAAATCTCTTAGGAG
TTCCTCAAGGGAATTCTATTGTAATACTCCCGAAACAATCCCACAATGCA
TCGTTATTTAGAAAAATCAAAAACCCCGATAAGGTCTATTGTATCTTCAC
AGTAATCATTGCAGAATGATGAACGCTGTGTAATGAGGGTTTTTTTTAAG
TGTTAAGTACAATGAAGTATAAGCCCGAGAGATGAGCTGGAGTTTTTACA
AGATACTTCACTAATTGGTCATTTGAAGTGATAGAGATGACGCGTTCTTT
AGAAAAAGTAATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCA
AATAAGAGCTTGTAAAAACTCCAGCTTGTCCCAAGCCCGAAGGGCTAGAA
GCAAATCTCCAACCTTTCTCAGGCAAGAAAAAGTGAAGCCTTAAAATATG
CGCCGTACTTTTGACGACTGATTGAATCTAGCAATTCCTTTGTTTTCGAG
TGCTATATTTTTTGAAATTTAGCCGTAAATTTTAGTTTCAATCTATCATT
TGTGTAAAAACCAGGCGGGCCACTCAAGGCCGCGCAATTTTGGTAGGATT
TTGTTGGCTTCAAATCCTACCAAGGAGATTCGATTCTAGCCCTTCGGTCT
TATACTTCATTGGTTAATTACAGTGAAGTCTCTTTAACTCGAACCTCTGA
AACTTGAATTTCTCCTTAACTCGAATAAATCTGTGTTTCTCGTGCGTGAG
TTCTAGAGGCTTATAGAGACACGGTACTAATTTAAAGCATCATATTTCAG
ATGAAGAAATAAAACGTAGCACCGTCAAAGCCGTCATCCCAAGAATGTCA
ATTGAATGGTCCATTAGATTAACTCTTCAAATTACCGGCATTAATCAACC
TAAAGATTGGTGCAATGTTATTCATTTGACAGAAGACTCGGATTCCGACC
GTTTGCCTAGTTTATTTTTCAATGAATGGATCAATCAACTTCGAATCTAT
TTTCCAGGTATTTTCACTTTATATTTTCTGTAATCATCAATCTAATAGCA
TCTACTATACACTTTCCAATCAATCCGCATTTTCTTATCCGAGACCTAAG
ATCTTTCTCTTTTGTTCCTAGAAATAAATCTCTTTATCATATTTCCAATC
TACAATTCTATACAATTTTGAAGTAATACTTCTTTGAAGAAAAAAAACTT
TTTTTGAAATCCTAAATTCCATAATAGCATTAAAGCTTGTTACTTAAGGA
CCTTAAGGGTTAGAAAATGGATTTTGTACCAAGGTATTTTCATATTCTTT
CTAAAAGTCTGTTCACGATAAGTGTGCACTCTTTTTTCTTTTACCTATAA
CTTTTGAAGGAATTCTTCAATCTTTATAAATTTAGTATCGTTGGAGAGAT
ATTTGGGAGTGGAACAATTTGAAATTAAAAAATCTTTAAAAAAATTCTAA
AAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAACGT
GCTATAACTTTCATTTTCACTGGAGAGATTTATTGATCTTTGGAGGTCAT
CACTGTGAGGAAATTTCACTAAAATATTTATTCAATATAAAGTTATGATA
CAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAGAAAACAGCGTTTTT
AGACGTCAACTAGCTTGTAACTTTGTTTGATATCTTTTGACTGAATGATT
ATTTTTGAGAAATTTTTTCACAGTGATGACGTTCGATGATCAAGGTTTCC
TTTCAGTGAAAATGATAGTTATAGCACTTTTCTACAAGATCTTCATTTTT
TTCTTCTTCATTTTCATCTTCATTTTCAGAATTTTTTTGAAGATTTTTTT
ATTTCAAATTGTTCCACTCACTAATATCTTTCCAATGACACCAAATTTAT
AAAGATCAAAGAATTCCTTCGAAAGTTATAGGTAAAAGAAAAAAGAGTGC
ACACTTATCGTGAATAGACTTTAAAAGCATTTTCTTTATGCCCTTTTAAA
TCAACTTGTCATGAGTTACAGCCTTAAGTCTGGGCGCAGGTATATTGGCA
AATTTATAGCGTGTATACACGTCACTCGGGTTCGAAGGGTTAAGCATTCA
ACAAATCAATAATATGTTTACAGGCAGAGATCAATCATGGCCATACGAAA
CCACACTTTCCCTTCACACAAACTACACCATAGAGATTCACCAAAGATAT
AAAAGCGGTGGTAAATATCAATTCATTGCCACAGTTAATGGTGATGAGAT
TGTCAACGTTGAAAGTCCACAAGCAGCATCTGTACAACGTTATGATGTGA
AAATCTATGCTAGCAATCCTTGGTTTGCTTCCTGCATTGGTATAATCAAA
GATTTCAGATTCACAAATTTTCTATAAAGAACTTTTTCAGTACTTCCCAG
CTAAATCTCCTTCATTTATGAACGATTCTTTCGCAGTCGGTAAGTTTGAT
CGAGGAGGCCCCAAACGGTTTTCGTGATTGTGGGATTGGCGTTTTTCAAG
CTTGCAATTTCGTGATTTTTAAAACTTTAAAGTGCATGATTGCGTGATCG
GAGGAACTCCCCTGGAGGAACCAACGTGATCGTGATAGAAAGGAAATTTA
ACTCGTGATAACGTGATTTGGAATTTTTTTGCGTGATTTGAAAGGTGACT
GGGGGAATGGGGGCCTCATTGAGGACCTTAATTAAGAAAAAAATGAAAAG
Coding sequence (CDS) from alignment at scaffold_228:345169..348218- >TCONS_00053330 ID=TCONS_00053330|Name=TCONS_00053330|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_228:345169..348218- (Clytia hemisphaerica)
GCAGAGATCAATCATGGCCATACGAAACCACACTTTCCCTTCACACAAAC
TACACCATAGAGATTCACCAAAGATATAAAAGCGGTGGTAAATATCAATT
CATTGCCACAGTTAATGGTGATGAGATTGTCAACGTTGAAAGTCCACAAG
CAGCATCTGTACAACGTTATGATGTGAAAATCTATGCTAGCAATCCTTGG
TTTGCTTCCTGCATTGGTATAATCAAAGATTTCAGATTCACAAATTTTCT
ATAAATGAAGAAATAAAACGTAGCACCGTCAAAGCCGTCATCCCAAGAAT
GTCAATTGAATGGTCCATTAGATTAACTCTTCAAATTACCGGCATTAATC
AACCTAAAGATTGGTGCAATGTTATTCATTTGACAGAAGACTCGGATTCC
GACCGTTTGCCTAGTTTATTTTTCAATGAATGGATCAATCAACTTCGAAT
CTATTTTCCAGCCTGAAAACAGACATGGAATCGCACCGTTAACCATCATA
AATCATGGCAGAGATCAATCATGGCCATACGAAACCACACTTTCCCTTCA
CACAAACTACACCATAGAGATTCACCAAAGATATAAAAGCGGTGGTAAAT
ATCAATTCATTGCCACAGTTAATGGTGATGAGATTGTCAACGTTGAAAGT
CCACAAGCAGCATCTGTACAACGTTATGATGTGAAAATCTATGCTAGCAA
TCCTTGGTTTGCTTCCTGCATTGGTATAATCAAAGATTTCAGATTCACAA
ATTTTCTATAAATGAAGAAATAAAACGTAGCACCGTCAAAGCCGTCATCC
CAAGAATGTCAATTGAATGGTCCATTAGATTAACTCTTCAAATTACCGGC
ATTAATCAACCTAAAGATTGGTGCAATGTTATTCATTTGACAGAAGACTC
GGATTCCGACCGTTTGCCTAGTTTATTTTTCAATGAATGGATCAATCAAC
TTCGAATCTATTTTCCAGCCTGAAAACAGACATGGAATCGCACCGTTAAC
CATCATAAATCATGGCAGAGATCAATCATGGCCATACGAAACCACACTTT
CCCTTCACACAAACTACACCATAGAGATTCACCAAAGATATAAAAGCGGT
GGTAAATATCAATTCATTGCCACAGTTAATGGTGATGAGATTGTCAACGT
TGAAAGTCCACAAGCAGCATCTGTACAACGTTATGATGTGAAAATCTATG
CTAGCAATCCTTGGTTTGCTTCCTGCATTGGTATAATCAAAGATTTCAGA
TTCACAAATTTTCTATAAATGAAGAAATAAAACGTAGCACCGTCAAAGCC
GTCATCCCAAGAATGTCAATTGAATGGTCCATTAGATTAACTCTTCAAAT
TACCGGCATTAATCAACCTAAAGATTGGTGCAATGTTATTCATTTGACAG
AAGACTCGGATTCCGACCGTTTGCCTAGTTTATTTTTCAATGAATGGATC
AATCAACTTCGAATCTATTTTCCAGCCTGAAAACAGACATGGAATCGCAC
CGTTAACCATCATAAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053330-exon-scaffold_228-1575043694:348173..348218 | TCONS_00053330-exon-scaffold_228-1575043694:348173..348218 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1575043694:346862..347068 | TCONS_00053330-exon-scaffold_228-1575043694:346862..347068 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1575043694:345169..345745 | TCONS_00053330-exon-scaffold_228-1575043694:345169..345745 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1510915933:348173..348218 | TCONS_00053330-exon-scaffold_228-1510915933:348173..348218 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1510915933:346862..347068 | TCONS_00053330-exon-scaffold_228-1510915933:346862..347068 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1510915933:345169..345745 | TCONS_00053330-exon-scaffold_228-1510915933:345169..345745 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1491911889:348173..348218 | TCONS_00053330-exon-scaffold_228-1491911889:348173..348218 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1491911889:346862..347068 | TCONS_00053330-exon-scaffold_228-1491911889:346862..347068 | Clytia hemisphaerica | exon |
| TCONS_00053330-exon-scaffold_228-1491911889:345169..345745 | TCONS_00053330-exon-scaffold_228-1491911889:345169..345745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:345169..348218 - |
Blast
The following BLAST results are available for this feature:
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