TCONS_00053329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053329
Unique NameTCONS_00053329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053329 ID=TCONS_00053329|Name=TCONS_00053329|organism=Clytia hemisphaerica|type=transcript|length=1470bp
tataaaaaaacgtgtatacacgtcaTTTTCACAAGAATAGAAAGGAGATC
CCACAATCTGTGACACAAGGTGTGTATACTGAAGTgcaaaatgataaaag
aaagaaagctCACTTACATCGTCCAAACTAATATTAGAAGAAATGCTTGA
TACACCATCGCTATCCAAATATTGATTGGTCAGTTTCAAAAACTTCTCTA
TGGTTGCTACTTCTCCGCTGGTTTCCAGACCTCCAGCATTCACATTAGTA
TCATCACTGTTCGAATAATGGATTTGTTTTGGATTTCTAGGCGAGTAAGA
AATACTTTGTGATCGTTTAGGACGACTGGAGATTGACATACGCGAGCCTC
GATTCGATTCTAAAGTCGACACTGGGCTCCATTCACTAAAATCAGAATCA
TCTCGAAATACGTGGTCATTAACCTCGCGTGCTACTTCACGGATTGCATT
TGATTTCGGCGGCTGTTTCAATGGTGCCCGCGTGATGTTCGGTGAAGGAT
AAGGTGAACCTGAATCTGAGCTAACACTTTGTAATCCTGAATCCAAGCGA
TCACGATTTGAGCTTTTTGCACTTGACGAGCGGTGTGAACcaagagtatt
ttcagaatcaGGACGATCAAAGTTAATAAGTTCATctattttttggaaaa
gttcATTGTGGGAAGGTGTTGTAGAATTTCTCGGTGATACGATGTCTGGT
ATTTTTGGTATCTCAATATCATTCTTTGGATTCTCTTCTTGAGATTTCAT
TGCAGAATTATTTTCCATTGCTGCATTAAGATCCATTGTTTCAGATACTA
AACATTCAGTTTCCACAACCGGTGATGGTGGTGGTTTAATATTAGATAAC
CAATCTCTCATGACATCATTTGGATCCCGGTTATCCGAAACGGATTCATC
ATTCAAATCGGATTCGGTTTCGTTTCGAGGAGTATCTATATCGGATTCTT
CATATCGATCACTAGTTGTGCATTCGGTTAATCGTGAAGAGCTTGAACGT
TCGATTTCTCTTGATATTTCACATAAAGtgttttgcactttttgaataCT
TTCTATGATTTCTTGATCTTCTGTTACAGGAGTTGAAGATTCCATATTTT
TTTGATCATCTTCTTGAAAATCTAAGTCGAGTCTGAAGTCATCTTTTCTT
TCACTATttgttacacccctgtctccttcGCAATTGACACTTTCCTCTCT
ATCTGTGCACGTGGTCCCGTCGACCTTTTTACGCAGcaataaatcttttt
tgaacaaaggGTTCTCTCGTATACTGCTCCCCGTAGGGAACTCTAACGTT
AAATGAGGTGAACCTGTACCGCTGTTTATGGTTCCCTGATATTCCTCTTC
AATAAGACTCTCAGGTCTTGTTTTCTTGAAACATCTTTCTAGCTCTTCAA
CTTGTTTTAATAGGTCAGTTGGATCGAATTCatctaaaatgttttttctc
gGGTTTTTTCCGAAAGTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_228:341340..342861-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053329 ID=TCONS_00053329|Name=TCONS_00053329|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at scaffold_228:341340..342861- (Clytia hemisphaerica)
TATAAAAAAACGTGTATACACGTCATTTTCACAAGAATAGAAAGGAGATC
CCACAATCTGTGACACAAGGTGTGTATACTGAAGTGCAAAATGATAAAAG
AAAGAAAGCTCACTTACATCGTCCAAACTAATATTAGAAGAAATGCTTGA
TACACCATCGCTATCCAAATATTGATTGGTCAGTTTCAAAAACTTCTCTA
TGGTTGCTACTTCTCCGCTGGTTTCCAGACCTCCAGCATTCACATTAGTA
TCATCACTGTTCGAATAATGGATTTGTTTTGGATTTCTAGGCGAGTAAGA
AATACTTTGTGATCGTTTAGGACGACTGGAGATTGACATACGCGAGCCTC
GATTCGATTCTAAAGTCGACACTGGGCTCCATTCACTAAAATCAGAATCA
TCTCGAAATACGTGGTCATTAACCTCGCGTGCTACTTCACGGATTGCATT
TGATTTCGGCGGCTGTTTCAATGGTGCCCGCGTGATGTTCGGTGAAGGAT
AAGGTGAACCTGAATCTGAGCTAACACTTTGTAATCCTGAATCCAAGCGA
TCACGATTTGAGCTTTTTGCACTTGACGAGCGGTGTGAACCAAGAGTATT
TTCAGAATCAGGACGATCAAAGTTAATAAGTTCATCTATTTTTTGGAAAA
GTTCATTGTGGGAAGGTGTTGTAGAATTTCTCGGTGATACGATGTCTGGT
ATTTTTGGTATCTCAATATCATTCTTTGGATTCTCTTCTTGAGATTTCAT
TGCAGAATTATTTTCCATTGCTGCATTAAGATCCATTGTTTCAGATACTA
AACATTCAGTTTCAACAACCGGTGATGGTGGTGNCCATTGTTTCAGATAC
TAAACATTCAGTTTCCACAACCGGTGATGGTGGTGGTTTAATATTAGATA
ACCAATCTCTCATGACATCATTTGGATCCCGGTTATCCGAAACGGATTCA
TCATTCAAATCGGATTCGGTTTCGTTTCGAGGAGTATCTATATCGGATTC
TTCATATCGATCACTAGTTGTGCATTCGGTTAATCGTGAAGAGCTTGAAC
GTTCGATTTCTCTTGATATTTCACATAAAGTGTTTTGCACTTTTTGAATA
CTTTCTATGATTTCTTGATCTTCTGTTACAGGAGTTGAAGATTCCATATT
TTTTTGATCATCTTCTTGAAAATCTAAGTCGAGTCTGAAGTCATCTTTTC
TTTCACTATTTGTTACACCCCTGTCTCCTTCGCAATTGACACTTTCCTCT
CTATCTGTGCACGTGGTCCCGTCGACCTTTTTACGCAGCAATAAATCTTT
TTTGAACAAAGGGTTCTCTCGTATACTGCTCCCCGTAGGGAACTCTAACG
TTAAATGAGGTGAACCTGTACCGCTGTTTATGGTTCCCTGATATTCCTCT
TCAATAAGACTCTCAGGTCTTGTTTTCTTGAAACATCTTTCTAGCTCTTC
AACTTGTTTTAATAGGTCAGTTGGATCGAATTCATCTAAAATGTTTTTTC
TCGGGTTTTTTCCGAAAGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033653XLOC_033653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053329-exon-scaffold_228-1575043694:342059..342861TCONS_00053329-exon-scaffold_228-1575043694:342059..342861Clytia hemisphaericaexon
TCONS_00053329-exon-scaffold_228-1575043694:341340..342006TCONS_00053329-exon-scaffold_228-1575043694:341340..342006Clytia hemisphaericaexon
TCONS_00053329-exon-scaffold_228-1510915933:342059..342861TCONS_00053329-exon-scaffold_228-1510915933:342059..342861Clytia hemisphaericaexon
TCONS_00053329-exon-scaffold_228-1510915933:341340..342006TCONS_00053329-exon-scaffold_228-1510915933:341340..342006Clytia hemisphaericaexon
TCONS_00053329-exon-scaffold_228-1491911889:342059..342861TCONS_00053329-exon-scaffold_228-1491911889:342059..342861Clytia hemisphaericaexon
TCONS_00053329-exon-scaffold_228-1491911889:341340..342006TCONS_00053329-exon-scaffold_228-1491911889:341340..342006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:341340..342861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.04096e-07	0	0	0	0	0.370542	0	0	0	0.292157	4.02466e-07	0	0.139978	0	0.935794	0.0638024	0	0	0	0	0	0	0	0	0	0	0	2.31253e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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