TCONS_00053317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053317
Unique NameTCONS_00053317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053317 ID=TCONS_00053317|Name=TCONS_00053317|organism=Clytia hemisphaerica|type=transcript|length=1562bp
AAATAAATGGGGGCGTGATAGGCCCGTGAATATTATTAGCGCATAATTTT
TGACTCGTGTTACGACGGTTTTTTACTCTTTTACAAGTTCTAAACATGAA
TGGAATAAATCTAAAAAGTTTAACATCAGAGGAAAGATCTCTCCAAAGAC
CAATATCAAGAATAAGTCGAAACAGTGGAGTGTGGTTGCAAgggaaaaat
actgaaaaacaGAAATTTGGAAGAGATGATTATCACAGACTACTTGCAAA
AGAGAAAGCACCGACCTCGCATGCCactttgaaagataatactatATTTA
ACGTATCCATCACCCGTCGTGAAAACGCTGAAACGAATGATTTTAACGAT
GCTATTGATCAATTGTCGAATTTGAATACAAACAATACTACAGTTGAAGG
AGAAAAATATAATTCCCTGGTGCAAAGATCGGGAAGATCTTCTTATGGAT
TTAGAAATACCGAAGATGAAGACAAATGGTTTCTCGAACCTGTTAACATG
GAGGATAATTCAAGTGTTTGTTTGGAGGATTTTGATAGTGCTGGCAACGT
TGGTGAGCCTTTTGAAGAACTATGCACCAAAGTTGAAAGAGCAAATGCTT
ATTGTTTGAGTGCTAAAATCTCTCCTTACgaagaaaaactttttagattg
agacgtgaaaaattgaaactgGAAGAAGCgtatttattgaaaaagaaatg
tgAGGAAGAACTGGAAAGAACTAGATTACCGAATGTCAAATGGTATGAGA
TGAAAAGTAAACAGTTTAATACAGAAATGATGAAACACAATTCTTTAATG
AGGAATGAAGttgatttatcagaattaacaCAATACAGAGTAGATCTTTA
CAataaatcgaaaaaatatgAACAGTTTAAAATGAATCCTTAAATAATAT
GGTAATTTCTAGTCCCGGGGGAGGCACTCAGGTAAAATTGGGAACGGGAC
GTgctgctggtcagggtcccttttttaggctctaaagttatctgacaggg
tcccaaatttactaattttcaacatTCGTACCTGACAGGGTCGTCCCTTC
caacagggtcccaaattttccaaaaattcatacctgacagggtccacttt
tcaaactctagCGGCATGTCatccccgtcggtcgtcaaggtcagtgccct
cCCCCGGGTTTCTAGTGCAGGCtcttttttccctaaattttaaacaaatc
atCTTCCAAAGAGGCTTTAAAAACAAGgacttctttttcatttttatcat
ttcgAGGTTTATTCCTGGGACTTGAGTTGAAAAAGGTTCCCTGACCCTAT
ATAATTGTGCTTAAATACCTGACCTATAAGTGTAAATAATTACACACTAC
ATTTACGATGGTTAAAAATtgtattatattttgaaaattatttttatagc
cTGTTTTAAATTCTGATACAATATCTCGTATTTCTACTTCATGGTATTTT
CTTCATAATGTCAAAAAGTTAGGTAAAGTCGAAATAGGCGCGACATAATC
TTCAACATTTCAATCAAACATCATCGATGTAGAAATGTTAACTATTTCTC
GTCGTAATATCC
Run BLAST on NCBI

protein sequence of TCONS_00053317-protein

>TCONS_00053317-protein ID=TCONS_00053317-protein|Name=TCONS_00053317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MNGINLKSLTSEERSLQRPISRISRNSGVWLQGKNTEKQKFGRDDYHRLL
AKEKAPTSHATLKDNTIFNVSITRRENAETNDFNDAIDQLSNLNTNNTTV
EGEKYNSLVQRSGRSSYGFRNTEDEDKWFLEPVNMEDNSSVCLEDFDSAG
NVGEPFEELCTKVERANAYCLSAKISPYEEKLFRLRREKLKLEEAYLLKK
KCEEELERTRLPNVKWYEMKSKQFNTEMMKHNSLMRNEVDLSELTQYRVD
LYNKSKKYEQFKMNP
Run BLAST on NCBI

transcript from alignment at scaffold_228:170593..173480-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053317 ID=TCONS_00053317|Name=TCONS_00053317|organism=Clytia hemisphaerica|type=transcript|length=2888bp|location=Sequence derived from alignment at scaffold_228:170593..173480- (Clytia hemisphaerica)
AAATAAATGGGGGCGTGATAGGCCCGTGAATATTATTAGCGCATAATTTT
TGACTCGTGTTACGACGGTTTTTTACTCTTTTACAAGTTCTAAACATGAA
TGGAATAAATCTAAAAAGTTTAACATCAGAGGAAAGATCTCTCCAAAGAC
CAATATCAAGAATAAGTCGAAACAGTGGAGTGTGGTTGCAAGGGAAAAAT
ACTGAAAAACAGTGAGTGCTTTTGTAATGCTGATGGATTTTTCGTTCGAT
ATATCTAGCATATAGTTTGATAATATTTGATCATATATCCTAGATCATGA
TTATCGCAACGCGTCCGCAACTGCTCGAGTCCCTGAGTCGTGAGTCTACA
TGCTTTAAAGCATACAATCATGTTTCAGCAACTCATAAGGACAATTCATA
TAGGGGGTAGTCCCAGTAGTCACAACCCTTACAGACACTTTTTTAAACCT
TTTTGTTGTTTCTAGGACATTTGACAATTTATAGGAGGGACATTTGAGTG
CTGGAGCGCTTAGTCGAAGTGTAAGGCATTCAAATTTTCCAGAATCTTTG
AGGAAAACCTTGACGAAATTTTTGTAAGTGGAATTTAGAGACTATTGTAT
ATAGAGGAATGTTAAGAGATGAAAAAAAAACAGCTTTCTGATTACTCAAA
GTTCAACAATCACTTATATTGAAAATTCTATTGATATTGTAAAAACGTTG
GTTAGGTCATTAAATGAAAGTCCAGAAAAGATAATCTGAGATCAGATTGT
GATTGTTTTTTGCACACCACGCTGAAGCTCTTTGACTCTAAAGGGATGTG
TGAAAACAAAAAAAATCTGACGAATATACCATCTCAAAATCGTAAGGACC
GCGTTTGTCTAAAAGGACTAGGAATGACGACAAAGTTGCGTGATTGTGTT
TATGAATAGGACGCCGTATCAGTTTTTGACTTTCCGGCGCACAACAAGAT
ACTTGTTATAGATTTTTTCGCGGGAAGACTATTTTACTCAGATGTTTAAT
GTACCTTTAATTTTCAAGCGCCTTCAGAGGTTTACAGTGCGCGTAAGAAA
AATTATCAGGTTACTTAAGAAAAGACGGCTCGCCATACAAAGGTCTACAA
ATCGGACGGTTTCTATATGATTTTACGATAAAAATGAAAATTTGTTTTTC
CTTTTTCGCCGATTACTAATTCAATTTTAAGAATAAGGAGCAATTTTTTT
ACCATGTATACCAAAAGAAATTCTTAACGCAATGAATTGATTCTTAGATT
TTTTAAAGCGATAACAAAAGAAACCTATTCAAAACCAAATTCCCTTGAGA
GACAGACCTGACTATATGGCGAGCCTTATTCCATTGTTTTAAAGAAACTG
TTTTTCCATCTCTTTAAATTCCTCTTTTTATATGTTCATGATAAAATCGA
ATGCAATGTTTCGCTGCAGGGGAAAGAATCCTAATCGTACAAAGAATCCG
ATGAATCGAGGATCAGCTTCTTCTATCTCGCTAATAACATAATCTGGATT
GTATCGTCTTATATCATAAATTTGTTTGATTTCATAGGAAATTTGGAAGA
GATGATTATCACAGACTACTTGCAAAAGAGAAAGCACCGACCTCGCATGC
CACTTTGAAAGATAATACTATATTTAACGTATCCATCACCCGTCGTGAAA
ACGCTGAAACGAATGATTTTAACGATGCTATTGATCAATTGTCGAATTTG
AATACAAACAATACTACAGTTGAAGGAGAAAAATATAATTCCCTGGTGCA
AAGATCGGGAAGATCTTCTTATGGATTTAGAAATACCGAAGATGAAGACA
AATGGTTTCTCGAACCTGTTAACATGGAGGATAATTCAAGTGTTTGTTTG
GAGGATTTTGATAGTGCTGGCAACGTTGGTGAGCCTTTTGAAGAACTATG
CACCAAAGTTGAAAGAGCAAATGCTTATTGTTTGAGTGCTAAAATCTCTC
CTTACGAAGAAAAACTTTTTAGATTGAGACGTGAAAAATTGAAACTGGAA
GAAGCGTATTTATTGAAAAAGAAATGTGAGGAAGAACTGGAAAGAACTAG
ATTACCGAATGTCAAATGGTATGAGATGAAAAGTAAACAGTTTAATACAG
AAATGATGAAACACAATTCTTTAATGAGGAATGAAGTTGATTTATCAGAA
TTAACACAATACAGAGTAGATCTTTACAATAAATCGAAAAAATATGAACA
GTTTAAAATGAATCCTTAAATAATATGGTAATTTCTAGTCCCGGGGGAGG
CACTCAGGTAAAATTGGGAACGGGACGTGCTGCTGGTCAGGGTCCCTTTT
TTAGGCTCTAAAGTTATCTGACAGGGTCCCAAATTTACTAATTTTCAACA
TTCGTACCTGACAGGGTCGTCCCTTCCAACAGGGTCCCAAATTTTCCAAA
AATTCATACCTGACAGGGTCCACTTTTCAAACTCTAGCGGCATGTCATCC
CCGTCGGTCGTCAAGGTCAGTGCCCTCCCCCGGGTTTCTAGTGCAGGCTC
TTTTTTCCCTAAATTTTAAACAAATCATCTTCCAAAGAGGCTTTAAAAAC
AAGGACTTCTTTTTCATTTTTATCATTTCGAGGTTTATTCCTGGGACTTG
AGTTGAAAAAGGTTCCCTGACCCTATATAATTGTGCTTAAATACCTGACC
TATAAGTGTAAATAATTACACACTACATTTACGATGGTTAAAAATTGTAT
TATATTTTGAAAATTATTTTTATAGCCTGTTTTAAATTCTGATACAATAT
CTCGTATTTCTACTTCATGGTATTTTCTTCATAATGTCAAAAAGTTAGGT
AAAGTCGAAATAGGCGCGACATAATCTTCAACATTTCAATCAAACATCAT
CGATGTAGAAATGTTAACTATTTCTCGTCGTAATATCC

Coding sequence (CDS) from alignment at scaffold_228:170593..173480-

>TCONS_00053317 ID=TCONS_00053317|Name=TCONS_00053317|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_228:170593..173480- (Clytia hemisphaerica)
GAAATTTGGAAGAGATGATTATCACAGACTACTTGCAAAAGAGAAAGCAC
CGACCTCGCATGCCACTTTGAAAGATAATACTATATTTAACGTATCCATC
ACCCGTCGTGAAAACGCTGAAACGAATGATTTTAACGATGCTATTGATCA
ATTGTCGAATTTGAATACAAACAATACTACAGTTGAAGGAGAAAAATATA
ATTCCCTGGTGCAAAGATCGGGAAGATCTTCTTATGGATTTAGAAATACC
GAAGATGAAGACAAATGGTTTCTCGAACCTGTTAACATGGAGGATAATTC
AAGTGTTTGTTTGGAGGATTTTGATAGTGCTGGCAACGTTGGTGAGCCTT
TTGAAGAACTATGCACCAAAGTTGAAAGAGCAAATGCTTATTGTTTGAGT
GCTAAAATCTCTCCTTACGAAGAAAAACTTTTTAGATTGAGACGTGAAAA
ATTGAAACTGGAAGAAGCGTATTTATTGAAAAAGAAATGTGAGGAAGAAC
TGGAAAGAACTAGATTACCGAATGTCAAATGGTATGAGATGAAAAGTAAA
CAGTTTAATACAGAAATGATGAAACACAATTCTTTAATGAGGAATGAAGT
TGATTTATCAGAATTAACACAATACAGAGTAGATCTTTACAATAAATCGA
AAAAATATGAACAGTTTAAAATGAATCCTTAAATGAATGGAATAAATCTA
AAAAGTTTAACATCAGAGGAAAGATCTCTCCAAAGACCAATATCAAGAAT
AAGTCGAAACAGTGGAGTGTGGTTGCAAGGGAAAAATACTGAAAAACAGA
AATTTGGAAGAGATGATTATCACAGACTACTTGCAAAAGAGAAAGCACCG
ACCTCGCATGCCACTTTGAAAGATAATACTATATTTAACGTATCCATCAC
CCGTCGTGAAAACGCTGAAACGAATGATTTTAACGATGCTATTGATCAAT
TGTCGAATTTGAATACAAACAATACTACAGTTGAAGGAGAAAAATATAAT
TCCCTGGTGCAAAGATCGGGAAGATCTTCTTATGGATTTAGAAATACCGA
AGATGAAGACAAATGGTTTCTCGAACCTGTTAACATGGAGGATAATTCAA
GTGTTTGTTTGGAGGATTTTGATAGTGCTGGCAACGTTGGTGAGCCTTTT
GAAGAACTATGCACCAAAGTTGAAAGAGCAAATGCTTATTGTTTGAGTGC
TAAAATCTCTCCTTACGAAGAAAAACTTTTTAGATTGAGACGTGAAAAAT
TGAAACTGGAAGAAGCGTATTTATTGAAAAAGAAATGTGAGGAAGAACTG
GAAAGAACTAGATTACCGAATGTCAAATGGTATGAGATGAAAAGTAAACA
GTTTAATACAGAAATGATGAAACACAATTCTTTAATGAGGAATGAAGTTG
ATTTATCAGAATTAACACAATACAGAGTAGATCTTTACAATAAATCGAAA
AAATATGAACAGTTTAAAATGAATCCTTAAATGAATGGAATAAATCTAAA
AAGTTTAACATCAGAGGAAAGATCTCTCCAAAGACCAATATCAAGAATAA
GTCGAAACAGTGGAGTGTGGTTGCAAGGGAAAAATACTGAAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033651XLOC_033651Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053317-proteinTCONS_00053317-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053317-exon-scaffold_228-1575043694:173270..173480TCONS_00053317-exon-scaffold_228-1575043694:173270..173480Clytia hemisphaericaexon
TCONS_00053317-exon-scaffold_228-1575043694:170593..171943TCONS_00053317-exon-scaffold_228-1575043694:170593..171943Clytia hemisphaericaexon
TCONS_00053317-exon-scaffold_228-1510915933:173270..173480TCONS_00053317-exon-scaffold_228-1510915933:173270..173480Clytia hemisphaericaexon
TCONS_00053317-exon-scaffold_228-1510915933:170593..171943TCONS_00053317-exon-scaffold_228-1510915933:170593..171943Clytia hemisphaericaexon
TCONS_00053317-exon-scaffold_228-1491911889:173270..173480TCONS_00053317-exon-scaffold_228-1491911889:173270..173480Clytia hemisphaericaexon
TCONS_00053317-exon-scaffold_228-1491911889:170593..171943TCONS_00053317-exon-scaffold_228-1491911889:170593..171943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:170593..173480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	18.1049	11.7081	10.3816	8.10859	3.74314	6.51405	4.33025	2.37818	0	0.515869	0.106029	0	0.560695	0.574694	0.396986	0.415417	1.03029	1.05671	0.214095	0	7.01007	5.42126	1.53622	1.36625	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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