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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053316 ID=TCONS_00053316|Name=TCONS_00053316|organism=Clytia hemisphaerica|type=transcript|length=1372bp
GAAAACCTTGACGAAATTTTTGAAATTTGGAAGAGATGATTATCACAGAC
TACTTGCAAAAGAGAAAGCACCGACCTCGCATGCCactttgaaagataat
actatATTTAACGTATCCATCACCCGTCGTGAAAACGCTGAAACGAATGA
TTTTAACGATGCTATTGATCAATTGTCGAATTTGAATACAAACAATACTA
CAGTTGAAGGAGAAAAATATAATTCCCTGGTGCAAAGATCGGGAAGATCT
TCTTATGGATTTAGAAATACCGAAGATGAAGACAAATGGTTTCTCGAACC
TGTTAACATGGAGGATAATTCAAGTGTTTGTTTGGAGGATTTTGATAGTG
CTGGCAACGTTGGTGAGCCTTTTGAAGAACTATGCACCAAAGTTGAAAGA
GCAAATGCTTATTGTTTGAGTGCTAAAATCTCTCCTTACgaagaaaaact
ttttagattgagacgtgaaaaattgaaactgGAAGAAGCgtatttattga
aaaagaaatgtgAGGAAGAACTGGAAAGAACTAGATTACCGAATGTCAAA
TGGTATGAGATGAAAAGTAAACAGTTTAATACAGAAATGATGAAACACAA
TTCTTTAATGAGGAATGAAGttgatttatcagaattaacaCAATACAGAG
TAGATCTTTACAataaatcgaaaaaatatgAACAGTTTAAAATGAATCCT
TAAATAATATGGTAATTTCTAGTCCCGGGGGAGGCACTCAGGTAAAATTG
GGAACGGGACGTgctgctggtcagggtcccttttttaggctctaaagtta
tctgacagggtcccaaatttactaattttcaacatTCGTACCTGACAGGG
TCGTCCCTTCcaacagggtcccaaattttccaaaaattcatacctgacag
ggtccacttttcaaactctagCGGCATGTCatccccgtcggtcgtcaagg
tcagtgccctcCCCCGGGTTTCTAGTGCAGGCtcttttttccctaaattt
taaacaaatcatCTTCCAAAGAGGCTTTAAAAACAAGgacttctttttca
tttttatcatttcgAGGTTTATTCCTGGGACTTGAGTTGAAAAAGGTTCC
CTGACCCTATATAATTGTGCTTAAATACCTGACCTATAAGTGTAAATAAT
TACACACTACATTTACGATGGTTAAAAATtgtattatattttgaaaatta
tttttatagccTGTTTTAAATTCTGATACAATATCTCGTATTTCTACTTC
ATGGTATTTTCTTCATAATGTCAAAAAGTTAGGTAAAGTCGAAATAGGCG
CGACATAATCTTCAACATTTCAATCAAACATCATCGATGTAGAAATGTTA
ACTATTTCTCGTCGTAATATCC Run BLAST on NCBI transcript from alignment at scaffold_228:170593..172928- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053316 ID=TCONS_00053316|Name=TCONS_00053316|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at scaffold_228:170593..172928- (Clytia hemisphaerica)
GAAAACCTTGACGAAATTTTTGTAAGTGGAATTTAGAGACTATTGTATAT
AGAGGAATGTTAAGAGATGAAAAAAAAACAGCTTTCTGATTACTCAAAGT
TCAACAATCACTTATATTGAAAATTCTATTGATATTGTAAAAACGTTGGT
TAGGTCATTAAATGAAAGTCCAGAAAAGATAATCTGAGATCAGATTGTGA
TTGTTTTTTGCACACCACGCTGAAGCTCTTTGACTCTAAAGGGATGTGTG
AAAACAAAAAAAATCTGACGAATATACCATCTCAAAATCGTAAGGACCGC
GTTTGTCTAAAAGGACTAGGAATGACGACAAAGTTGCGTGATTGTGTTTA
TGAATAGGACGCCGTATCAGTTTTTGACTTTCCGGCGCACAACAAGATAC
TTGTTATAGATTTTTTCGCGGGAAGACTATTTTACTCAGATGTTTAATGT
ACCTTTAATTTTCAAGCGCCTTCAGAGGTTTACAGTGCGCGTAAGAAAAA
TTATCAGGTTACTTAAGAAAAGACGGCTCGCCATACAAAGGTCTACAAAT
CGGACGGTTTCTATATGATTTTACGATAAAAATGAAAATTTGTTTTTCCT
TTTTCGCCGATTACTAATTCAATTTTAAGAATAAGGAGCAATTTTTTTAC
CATGTATACCAAAAGAAATTCTTAACGCAATGAATTGATTCTTAGATTTT
TTAAAGCGATAACAAAAGAAACCTATTCAAAACCAAATTCCCTTGAGAGA
CAGACCTGACTATATGGCGAGCCTTATTCCATTGTTTTAAAGAAACTGTT
TTTCCATCTCTTTAAATTCCTCTTTTTATATGTTCATGATAAAATCGAAT
GCAATGTTTCGCTGCAGGGGAAAGAATCCTAATCGTACAAAGAATCCGAT
GAATCGAGGATCAGCTTCTTCTATCTCGCTAATAACATAATCTGGATTGT
ATCGTCTTATATCATAAATTTGTTTGATTTCATAGGAAATTTGGAAGAGA
TGATTATCACAGACTACTTGCAAAAGAGAAAGCACCGACCTCGCATGCCA
CTTTGAAAGATAATACTATATTTAACGTATCCATCACCCGTCGTGAAAAC
GCTGAAACGAATGATTTTAACGATGCTATTGATCAATTGTCGAATTTGAA
TACAAACAATACTACAGTTGAAGGAGAAAAATATAATTCCCTGGTGCAAA
GATCGGGAAGATCTTCTTATGGATTTAGAAATACCGAAGATGAAGACAAA
TGGTTTCTCGAACCTGTTAACATGGAGGATAATTCAAGTGTTTGTTTGGA
GGATTTTGATAGTGCTGGCAACGTTGGTGAGCCTTTTGAAGAACTATGCA
CCAAAGTTGAAAGAGCAAATGCTTATTGTTTGAGTGCTAAAATCTCTCCT
TACGAAGAAAAACTTTTTAGATTGAGACGTGAAAAATTGAAACTGGAAGA
AGCGTATTTATTGAAAAAGAAATGTGAGGAAGAACTGGAAAGAACTAGAT
TACCGAATGTCAAATGGTATGAGATGAAAAGTAAACAGTTTAATACAGAA
ATGATGAAACACAATTCTTTAATGAGGAATGAAGTTGATTTATCAGAATT
AACACAATACAGAGTAGATCTTTACAATAAATCGAAAAAATATGAACAGT
TTAAAATGAATCCTTAAATAATATGGTAATTTCTAGTCCCGGGGGAGGCA
CTCAGGTAAAATTGGGAACGGGACGTGCTGCTGGTCAGGGTCCCTTTTTT
AGGCTCTAAAGTTATCTGACAGGGTCCCAAATTTACTAATTTTCAACATT
CGTACCTGACAGGGTCGTCCCTTCCAACAGGGTCCCAAATTTTCCAAAAA
TTCATACCTGACAGGGTCCACTTTTCAAACTCTAGCGGCATGTCATCCCC
GTCGGTCGTCAAGGTCAGTGCCCTCCCCCGGGTTTCTAGTGCAGGCTCTT
TTTTCCCTAAATTTTAAACAAATCATCTTCCAAAGAGGCTTTAAAAACAA
GGACTTCTTTTTCATTTTTATCATTTCGAGGTTTATTCCTGGGACTTGAG
TTGAAAAAGGTTCCCTGACCCTATATAATTGTGCTTAAATACCTGACCTA
TAAGTGTAAATAATTACACACTACATTTACGATGGTTAAAAATTGTATTA
TATTTTGAAAATTATTTTTATAGCCTGTTTTAAATTCTGATACAATATCT
CGTATTTCTACTTCATGGTATTTTCTTCATAATGTCAAAAAGTTAGGTAA
AGTCGAAATAGGCGCGACATAATCTTCAACATTTCAATCAAACATCATCG
ATGTAGAAATGTTAACTATTTCTCGTCGTAATATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053316-exon-scaffold_228-1575043694:172908..172928 | TCONS_00053316-exon-scaffold_228-1575043694:172908..172928 | Clytia hemisphaerica | exon |
| TCONS_00053316-exon-scaffold_228-1575043694:170593..171943 | TCONS_00053316-exon-scaffold_228-1575043694:170593..171943 | Clytia hemisphaerica | exon |
| TCONS_00053316-exon-scaffold_228-1510915933:172908..172928 | TCONS_00053316-exon-scaffold_228-1510915933:172908..172928 | Clytia hemisphaerica | exon |
| TCONS_00053316-exon-scaffold_228-1510915933:170593..171943 | TCONS_00053316-exon-scaffold_228-1510915933:170593..171943 | Clytia hemisphaerica | exon |
| TCONS_00053316-exon-scaffold_228-1491911889:172908..172928 | TCONS_00053316-exon-scaffold_228-1491911889:172908..172928 | Clytia hemisphaerica | exon |
| TCONS_00053316-exon-scaffold_228-1491911889:170593..171943 | TCONS_00053316-exon-scaffold_228-1491911889:170593..171943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:170593..172928 - |
Blast
The following BLAST results are available for this feature:
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