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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053306 ID=TCONS_00053306|Name=TCONS_00053306|organism=Clytia hemisphaerica|type=transcript|length=720bp
TTTTTTACCATATCAATccattcaaaaattgtgtggAAATAACTTCACAT
GATATTACATTATAGAATTTACTGACTCAAAATCCTCCATAGGCGTTTTG
AGTACACCTTACAAAACACTTGGCAGACAAGAGAGACACAGAATTTTCGA
TGATTTGGGTTTCTCTGATAAAATACAAGCAATCCATGACGAGGCTGGAA
ATGAATTTAAATCTACTCGTAAAGATTCAGGAATTGTCTCGATAAGATCA
GTTGAAAGCCAGCTTCATAATGTCAGATCACGCACCATGTCAACCATCGA
ACAGACATCCAGATGTTTTTTAGCACAAGATGATATCATTCAGCAAAAAG
ACATCATGATATCAAGCCTGCAGAACATCATTGATAAAGAGAGAGAAAGA
AGTTTGAATTTGGAACAAAAACTTATTCAAAACAACCATGCTTATTTGGA
CTCAAGAAACAATTACTTGGAGCAGGAATATGAAAGCCAAGTAGAAATAA
TGAAGTACCAAATGCAAGAGTCCAACTCGAAAAATCATGGGGAATTGGAG
AAGCTTCAAAGAAAACTAGGGTTAggaaaaaaatacaacaaaatcattta
aaaaagctgTTAAGAATTTCTTACATGTCAATAAGTGATAAGGATTCAAA
TAGTAGAATCTGTGAGCTTTTTTTACAAATGCAGTGTGTATAGATGTTTT
GGCAAACGCGACTGTctttt Run BLAST on NCBI protein sequence of TCONS_00053306-protein >TCONS_00053306-protein ID=TCONS_00053306-protein|Name=TCONS_00053306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSTIEQTSRCFLAQDDIIQQKDIMISSLQNIIDKERERSLNLEQKLIQNN
HAYLDSRNNYLEQEYESQVEIMKYQMQESNSKNHGELEKLQRKLGLGKKY
NKII Run BLAST on NCBI transcript from alignment at scaffold_228:526346..528506+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053306 ID=TCONS_00053306|Name=TCONS_00053306|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_228:526346..528506+ (Clytia hemisphaerica)
TTTTTTACCATATCAATccattcaaaaattgtgtggAAATAACTTCACAT
GATATTACATTATAGAATTTACTGACTCAAAATCCTCCATAGGCGTTTTG
AGTACACCTTACAAAACACTTGGCAGACAAGAGAGACACAGAATTTTCGA
TGATTTGGGTTTCTCTGATAAAATACAAGCAATCCATGACGAGGCTGGAA
ATGAATTTAAATCTACTCGTAAAGATTCAGGAATTGTCTCGATAAGATCA
GGTAAAAATTCGATGTAGAATGATAAATGGATATGATTGATAAGTAATGG
GGAGTGCTATGaatattgtttttatataatgAGCTTAAAAGAATTAACCT
GCTGTTACTAAAagctaaagaaaataaagaacttaTATGAAATAATATCC
TTTATTATTTGGATTaagatttcactgaagattgccatcctggatgacca
tagttcggacccccccccctttcttaagggggggatgacaccttccaaaa
aagtgaagaagggggggatcagaaattttcaagggGGGTGGGGGGTAGCA
AGGAGGGggatcgtttaagaaggggggcttacatatattgtagattattt
tcaagcactgttatgaaatttggtctgccTGAAAGGAAGtcctttatttt
cactaaaaagtggtattatatttaccagatttaatttttctttactgttt
cccttccctttttaccataaaaaatttagcccatacccttgggggatagg
catttttaaaggttggggggggatgccaagaagggggatcATTTGTGAac
ccccaagcgatttggagtacattaaaaatgagaccggtcttggtgcggaC
AGATCCATAAAATGTGCGGCAAAAAAGCGGCGAAACGCTTACCGTGCGGT
AAAATGATACCTTTGTATCGGCcagaaatcatcaaaaaatattttctaaa
aatccattCAAACACACTCGATCGGTCACTAAAGAGCACCATTTGAATAA
GTGCAGTATTCAGTGCGGTCATGGTGCGGACATTTTGCTTGGGTGACTTT
TTGCTTAcgagttgttgttgttttgcttgctagaactcgaggctgaaatt
cttacGGCAACcgaaagaaatataaacaaacggcagggaccgcaccatcg
tccgcTTAAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCGGT
CTTCTGGccgcttttttcaatttttactcgCACAATTAACCAGTTGGAAA
GCGGCACGAGGACGaccgcaccaagaccggtctcgTTTTTAATGTACTCT
AAATCGTTAGGAGGGTcacatttaagaaggggggatcatttaagaagggt
gggatcagacccctttccgcactatgggatggcatgaaactttgagtatg
aaattaacataaatcgttttgtttactttattatttgtcATTTCAGTTGA
AAGCCAGCTTCATAATGTCAGATCACGCACCATGTCAACCATCGAACAGA
CATCCAGATGTTTTTTAGCACAAGATGATATCATTCAGCAAAAAGACATC
ATGATATCAAGGTTCTTTACCCAAACAAGTTTTGgacttttcttttaaaa
tgataatttttgagCGGAATGAGTGTCCTCATTTTCCCTCAGTACCCCTT
GTAGAAATCTTTGTTTAATAGTGAATCTCCGAAGAGTATTCCAGATTGGA
TACTTAATAGTATTGAATACATTTGAACGCTCTATTCAATACATCCTTTA
TAGCACAGATTCCTATTCTTAGAGTTTTTAATTCTTTCAACTTCAATACA
AATTTAGCCTGCAGAACATCATTGATAAAGAGAGAGAAAGAAGTTTGAAT
TTGGAACAAAAACTTATTCAAAACAACCATGCTTATTTGGACTCAAGAAA
CAATTACTTGGAGCAGGAATATGAAAGCCAAGTAGAAATAATGAAGTACC
AAATGCAAGAGTCCAACTCGAAAAATCATGGGGAATTGGAGAAGCTTCAA
AGAAAACTAGGGTTAggaaaaaaatacaacaaaatcatttaaaaaagctg
TTAAGAATTTCTTACATGTCAATAAGTGATAAGGATTCAAATAGTAGAAT
CTGTGAGCTTTTTTTACAAATGCAGTGTGTATAGATGTTTTGGCAAACGC
GACTGTctttt Coding sequence (CDS) from alignment at scaffold_228:526346..528506+ >TCONS_00053306 ID=TCONS_00053306|Name=TCONS_00053306|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_228:526346..528506+ (Clytia hemisphaerica)
ATGTCAACCATCGAACAGACATCCAGATGTTTTTTAGCACAAGATGATAT
CATTCAGCAAAAAGACATCATGATATCAAGCCTGCAGAACATCATTGATA
AAGAGAGAGAAAGAAGTTTGAATTTGGAACAAAAACTTATTCAAAACAAC
CATGCTTATTTGGACTCAAGAAACAATTACTTGGAGCAGGAATATGAAAG
CCAAGTAGAAATAATGAAGTACCAAATGCAAGAGTCCAACTCGAAAAATC
ATGGGGAATTGGAGAAGCTTCAAAGAAAACTAGGGTTAggaaaaaaatac
aacaaaatcatttaaATGTCAACCATCGAACAGACATCCAGATGTTTTTT
AGCACAAGATGATATCATTCAGCAAAAAGACATCATGATATCAAGCCTGC
AGAACATCATTGATAAAGAGAGAGAAAGAAGTTTGAATTTGGAACAAAAA
CTTATTCAAAACAACCATGCTTATTTGGACTCAAGAAACAATTACTTGGA
GCAGGAATATGAAAGCCAAGTAGAAATAATGAAGTACCAAATGCAAGAGT
CCAACTCGAAAAATCATGGGGAATTGGAGAAGCTTCAAAGAAAACTAGGG
TTAggaaaaaaatacaacaaaatcatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053306-exon-scaffold_228-1491911889:526346..526596 | TCONS_00053306-exon-scaffold_228-1491911889:526346..526596 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1510915933:526346..526596 | TCONS_00053306-exon-scaffold_228-1510915933:526346..526596 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1575043694:526346..526596 | TCONS_00053306-exon-scaffold_228-1575043694:526346..526596 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1491911889:527792..527906 | TCONS_00053306-exon-scaffold_228-1491911889:527792..527906 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1510915933:527792..527906 | TCONS_00053306-exon-scaffold_228-1510915933:527792..527906 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1575043694:527792..527906 | TCONS_00053306-exon-scaffold_228-1575043694:527792..527906 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1491911889:528153..528506 | TCONS_00053306-exon-scaffold_228-1491911889:528153..528506 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1510915933:528153..528506 | TCONS_00053306-exon-scaffold_228-1510915933:528153..528506 | Clytia hemisphaerica | exon |
| TCONS_00053306-exon-scaffold_228-1575043694:528153..528506 | TCONS_00053306-exon-scaffold_228-1575043694:528153..528506 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:526346..528506 + |
Blast
The following BLAST results are available for this feature:
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