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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053296 ID=TCONS_00053296|Name=TCONS_00053296|organism=Clytia hemisphaerica|type=transcript|length=1705bp
TATTTCagcagaaaaaaatgaaatcggtCAATCAATTTTAAACGATATCT
TGCGAGAGAGGGGGAAGTAAAAGTTGTGTTATGATATGAGAGTTTACGAC
GGACGTTTGAgGTTACAATTACAGTAAATGACAACAAAAGTGTTGGTGTT
TGCATTGTGTGTGTGACGAAACTAAACAATACAAAAGAGTGTAAACAAGT
GGAAGAAAGGAGGCTGCTACCCTTTTAAAATATAATCCATATAAAAGGAC
CAAGCATCATTTAAAGATAATCATTTATCATTGATCTGTCAACTGTCAAT
TATCAAGGATAAAATTAAACCTGATCTGTCATTATTAACGTTCACGAAAA
ATGCGTTATTCAAATACAACCATCGGTTGCTGTGCAGTCGATCAGAAGCA
AACAATCGGTTGCTATGGTGGAGTCGGTGCTGGCAAAGATACAGCGTCGT
TGATACGGTGTACTTACACACGTCGCTTCACCGTCAATATTCAACAGAAA
ACTACGTCAAATGATATTTTTCAACTCGATCCGAAAAAAGTACATCAGAA
AGAACGCAAACGTGTTCGCTTTGCAGATGACGAGGGTGGTTTATTATGTT
CCGTcaaaattttcgaagaaaaGTCGTTCGTCTATCAACCGAGGCTACAC
ACGACACCTGCTTTTTCCAAAACGAACTTAACCAATTACAAGACTGTTTA
CAACGAGACCAAATTGTCATTAAAGAATGTATGCATGGTAGCTTACGGTC
TCGTCGGCGGCTCTAATTTATTCGGTGCTATTGCCGTACGTAATATTGCC
TTCCGTAAGGACGTTAAAGTACGTATCACGTTAGACGGCTGGAAAACGTC
ATCAGATTTACCTGCAAAGTTTGTTCAACAAGAATTTAACGGACAAATAG
ATCGCTTCTTTTTCATGAAGCCACTCGGCGAACTTGATTTTGATGATGTT
TGTAATGACATTGAATTTGCTGTATGTTTTACAGTTGATGGTGTTGAACA
CTGGGACAATAACAGTGGACTCAACTATAAATACCAATCATCCAACAAAT
GTCTatagtattttttaatgaaatcagTTTTTGTTTGTTATGTCAAGTTG
ATTAATTGAACGTTCCCGCCCGTTGAATATTTTCCCGCCTGCTTATTTAG
CAGATGCGCGATTTCGAGGCCGTGTCGTCGCATCGCCGTCTGTAATACAA
GTTTATTCCGCCAAGTCCCGGAAAAAGATTCCTTTATTCGTTCTTACGCT
CAAAGTCTTTGTTCTTTAGATAAACTATAACAAATTTATTCAACATTTAT
TCCTTTCTTACTGGCTTATGTAGAAatagaaaattcgaaaaaaaaaggag
aaaaacattttcaaagcaTTCATCATCGCACGCAAAAATGTTAATTTGTA
GAAAAAATGGTATAATCGCGCATGCGTTTTCAAATACATTGAATGCTTTG
GAAAAAAGTtattaataatataataatattgtagaaaaaaaaaagaaaga
tctaATGAAGGCAATATTCtgaaaatattctcaaaatattcttttaaaag
taatttAGCCCTGAAATCTTTCAATCTTTCCTTCATTGATTCTTGctttg
tatattttgtatataatttagcattttttttagtttgtttgAATGGAGCA
TTATTTTTCCTCTCTAATATTTTGTTTTAGGGAAGGGAATTCTTTTAGAT
TATAG Run BLAST on NCBI transcript from alignment at scaffold_228:386931..388820+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053296 ID=TCONS_00053296|Name=TCONS_00053296|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at scaffold_228:386931..388820+ (Clytia hemisphaerica)
TATTTCagcagaaaaaaatgaaatcggtCAATCAATTTTAAACGATATCT
TGCGAGAGAGGGGGAAGTAAAAGTTGTGTTATGATATGAGAGTTTACGAC
GGACGTTTGAggtttctaaagtttgtttttcttgTCGCATAATTTTCATT
ATATCTTTCCCTGGCATGCTTTGGATGCATGCTTCAATCATGATTAGATT
GTTTATGTGTTGTTCTTAAAATTCATTGCTTGACAAAAAAGCAAGCCTGT
TTGTATCGCacataattttaatattttgttgtttttcttttctcagGTTA
CAATTACAGTAAATGACAACAAAAGTGTTGGTGTTTGCATTGTGTGTGTG
ACGAAACTAAACAATACAAAAGAGTGTAAACAAGTGGAAGAAAGGAGGCT
GCTACCCTTTTAAAATATAATCCATATAAAAGGACCAAGCATCATTTAAA
GATAATCATTTATCATTGATCTGTCAACTGTCAATTATCAAGGATAAAAT
TAAACCTGATCTGTCATTATTAACGTTCACGAAAAATGCGTTATTCAAAT
ACAACCATCGGTTGCTGTGCAGTCGATCAGAAGCAAACAATCGGTTGCTA
TGGTGGAGTCGGTGCTGGCAAAGATACAGCGTCGTTGATACGGTGTACTT
ACACACGTCGCTTCACCGTCAATATTCAACAGAAAACTACGTCAAATGAT
ATTTTTCAACTCGATCCGAAAAAAGTACATCAGAAAGAACGCAAACGTGT
TCGCTTTGCAGATGACGAGGGTGGTTTATTATGTTCCGTcaaaattttcg
aagaaaaGTCGTTCGTCTATCAACCGAGGCTACACACGACACCTGCTTTT
TCCAAAACGAACTTAACCAATTACAAGACTGTTTACAACGAGACCAAATT
GTCATTAAAGAATGTATGCATGGTAGCTTACGGTCTCGTCGGCGGCTCTA
ATTTATTCGGTGCTATTGCCGTACGTAATATTGCCTTCCGTAAGGACGTT
AAAGTACGTATCACGTTAGACGGCTGGAAAACGTCATCAGATTTACCTGC
AAAGTTTGTTCAACAAGAATTTAACGGACAAATAGATCGCTTCTTTTTCA
TGAAGCCACTCGGCGAACTTGATTTTGATGATGTTTGTAATGACATTGAA
TTTGCTGTATGTTTTACAGTTGATGGTGTTGAACACTGGGACAATAACAG
TGGACTCAACTATAAATACCAATCATCCAACAAATGTCTatagtattttt
taatgaaatcagTTTTTGTTTGTTATGTCAAGTTGATTAATTGAACGTTC
CCGCCCGTTGAATATTTTCCCGCCTGCTTATTTAGCAGATGCGCGATTTC
GAGGCCGTGTCGTCGCATCGCCGTCTGTAATACAAGTTTATTCCGCCAAG
TCCCGGAAAAAGATTCCTTTATTCGTTCTTACGCTCAAAGTCTTTGTTCT
TTAGATAAACTATAACAAATTTATTCAACATTTATTCCTTTCTTACTGGC
TTATGTAGAAatagaaaattcgaaaaaaaaaggagaaaaacattttcaaa
gcaTTCATCATCGCACGCAAAAATGTTAATTTGTAGAAAAAATGGTATAA
TCGCGCATGCGTTTTCAAATACATTGAATGCTTTGGAAAAAAGTtattaa
taatataataatattgtagaaaaaaaaaagaaagatctaATGAAGGCAAT
ATTCtgaaaatattctcaaaatattcttttaaaagtaatttAGCCCTGAA
ATCTTTCAATCTTTCCTTCATTGATTCTTGctttgtatattttgtatata
atttagcattttttttagtttgtttgAATGGAGCATTATTTTTCCTCTCT
AATATTTTGTTTTAGGGAAGGGAATTCTTTTAGATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053296-exon-scaffold_228-1491911889:386931..387041 | TCONS_00053296-exon-scaffold_228-1491911889:386931..387041 | Clytia hemisphaerica | exon |
| TCONS_00053296-exon-scaffold_228-1510915933:386931..387041 | TCONS_00053296-exon-scaffold_228-1510915933:386931..387041 | Clytia hemisphaerica | exon |
| TCONS_00053296-exon-scaffold_228-1575043694:386931..387041 | TCONS_00053296-exon-scaffold_228-1575043694:386931..387041 | Clytia hemisphaerica | exon |
| TCONS_00053296-exon-scaffold_228-1491911889:387227..388820 | TCONS_00053296-exon-scaffold_228-1491911889:387227..388820 | Clytia hemisphaerica | exon |
| TCONS_00053296-exon-scaffold_228-1510915933:387227..388820 | TCONS_00053296-exon-scaffold_228-1510915933:387227..388820 | Clytia hemisphaerica | exon |
| TCONS_00053296-exon-scaffold_228-1575043694:387227..388820 | TCONS_00053296-exon-scaffold_228-1575043694:387227..388820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:386931..388820 + |
Blast
The following BLAST results are available for this feature:
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