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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053292 ID=TCONS_00053292|Name=TCONS_00053292|organism=Clytia hemisphaerica|type=transcript|length=2583bp
GAAGAAACTTTCGGAAAAAACCcgagaaaaaacattttagatGAATTCGA
TCCAACTGACCTATTAAAACAAGTTGAAGAGCTAGAAAGATGTTTCAAGA
AAACAAGACCTGAGAGTCTTATTGAAGAGGAATATCAGGGAACCATAAAC
AGCGGTACAGGTTCACCTCATTTAACGTTAGAGTTCCCTACGGGGAGCAG
TATACGAGAGAACcctttgttcaaaaaagatttattgCTGCGTAAAAAGG
TCGACGGGACCACGTGCACAGATAGAGAGGAAAGTGTCAATTGCgaagga
gacaggggtgtaacaaATAGTGAAAGAAAAGATGACTTCAGACTCGACTT
AGATTTTCAAGAAGATGATCAAAAAAATATGGAATCTTCAACTCCTGTAA
CAGAAGATCAAGAAATCATAGAAAGtattcaaaaagtgcaaaacaCTTTA
TGTGAAATATCAAGAGAAATCGAACGTTCAAGCTCTTCACGATTAACCGA
ATGCACAACTAGTGATCGATATGAAGAATCCGATATAGATACTCCTCGAA
ACGAAACCGAATCCGATTTGAATGATGAATCCGTTTCGGATAACCGGGAT
CCAAATGATGTCATGAGAGATTGGTTATCTAATATTAAACCACCACCATC
ACCGGTTGTGGAAACTGAATGTTTAGTATCTGAAACAATGGNCACCACCA
TCACCGGTTGTTGAAACTGAATGTTTAGTATCTGAAACAATGGATCTTAA
TGCAGCAATGGAAAATAATTCTGCAATGAAATCTCAAGAAGAGAATCCAA
AGAATGATATTGAGATACCAAAAATACCAGACATCGTATCACCGAGAAAT
TCTACAACACCTTCCCACAATgaacttttccaaaaaatagATGAACTTAT
TAACTTTGATCGTCCtgattctgaaaatactcttgGTTCACACCGCTCGT
CAAGTGCAAAAAGCTCAAATCGTGATCGCTTGGATTCAGGATTACAAAGT
GTTAGCTCAGATTCAGGTTCACCTTATCCTTCACCGAACATCACGCGGGC
ACCATTGAAACAGCCGCCGAAATCAAATGCAATCCGTGAAGTAGCACGCG
AGGTTAATGACCACGTATTTCGAGATGATTCTGATTTTAGTGAATGGAGC
CCAGTGTCGACTTTAGAATCGAATCGAGGCTCGCGTATGTCAATCTCCAG
TCGTCCTAAACGATCACAAAGTATTTCTTACTCGCCTAGAAATCCAAAAC
AAATCCATTATTCGAACAGTGATGATACTAATGTGAATGCTGGAGGTCTG
GAAACCAGCGGAGAAGTAGCAACCATAGAGAAGTTTTTGAAACTGACCAA
TCAATATTTGGATAGCGATGGTGTATCAAGCATTTCTTCTAATATTAGTT
TGGACGATTTGGCGATGCTACCAAACTTGAGAGAATCTCTTGAACAACAA
CGAAAGGAGCTTGAGGAACAACGGAAAAAGCAAGAAGACTTTTTACACCA
GTTAGGTGATTTGCTACTGGAAGTTGTCACTTTAAAAGAAGAACAATCAA
CCGTCCGTTCAAAACAAACTAAAGCgttaaatttattgaaaaagcaATTG
GATGCTCATAAAAAGTCTCAATCAAAAGCTCACACAGATGTCATAAACAA
AGTAAAAAGCCTGGATGAAAAATTGAGCACTAGCCTGAATCTCTCATCAG
GAGAACATCAGACACAAATCTCACCAATTTCGCCGGGTCTGGGCTCTAAA
GGTTTTGTATACCCCGTGTCCGGGCTAAATGATTTTCGTCAACAGGAAGA
GAATTCGCAACGAGGTCATATTATATGGAAAGTTTCAGACGTTATGAAAA
AACTGACTCGAGTTAAAACGGGTAGTTCGGAAGGAACAGTGGTCAGCCCG
TCATTCCAAACCGGAGAATACGGATACCGGATGAATGGGTGGTTATATTT
AAACGGGCGTGGTAAAATGACTGGAAAATATTTATCATTGTATGTTTGCG
TATTAGTTGGAGACTATGATGCCATTTTGAAATGGCCTATCAAACCATCG
TATACTTTAACACTCATGGATCAGAATGGGGACTCGCATAAGAGGCACGA
CCACGTCAAAGTTCGTCGTGTCTTGGATATCGCCGGACGTGGAGCCAATG
TTATATCTCAGTATGGTGGAATTCCGAGACCAAGTGATTGTACTAAAGCT
CTGATTGTTGGTTTTGATGATTTCATATCACACGAGAAACTTTTGGAAAG
GAGATATTTAGCGGACGACacattatttattaaaattgaAGCTAATATTA
GCTAACTTGTTGTACTATTCGTTATGATTGCTTCCTTTATATAGAATTCT
AATATATTCTCTACTTCTGCTAGCCGTAAAATGGCTCTACTGTAATCAGG
AAATTGACTCAGCGACCCAGTTCTAAAATTAAGAAAGAAACCAATATTTG
GTGGGGTGGTGGTTATTCTTAATCTACTTCGTATCATTTCCAGTATATTC
AAATATAAAAACGACTCATTCCAATTTCCAATCAACTAAGAAAATATTAG
AAGAAAAATGTTTGTTAGGTTAATATACTGCAA Run BLAST on NCBI protein sequence of TCONS_00053292-protein >TCONS_00053292-protein ID=TCONS_00053292-protein|Name=TCONS_00053292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MDLNAAMENNSAMKSQEENPKNDIEIPKIPDIVSPRNSTTPSHNELFQKI
DELINFDRPDSENTLGSHRSSSAKSSNRDRLDSGLQSVSSDSGSPYPSPN
ITRAPLKQPPKSNAIREVAREVNDHVFRDDSDFSEWSPVSTLESNRGSRM
SISSRPKRSQSISYSPRNPKQIHYSNSDDTNVNAGGLETSGEVATIEKFL
KLTNQYLDSDGVSSISSNISLDDLAMLPNLRESLEQQRKELEEQRKKQED
FLHQLGDLLLEVVTLKEEQSTVRSKQTKALNLLKKQLDAHKKSQSKAHTD
VINKVKSLDEKLSTSLNLSSGEHQTQISPISPGLGSKGFVYPVSGLNDFR
QQEENSQRGHIIWKVSDVMKKLTRVKTGSSEGTVVSPSFQTGEYGYRMNG
WLYLNGRGKMTGKYLSLYVCVLVGDYDAILKWPIKPSYTLTLMDQNGDSH
KRHDHVKVRRVLDIAGRGANVISQYGGIPRPSDCTKALIVGFDDFISHEK
LLERRYLADDTLFIKIEANIS Run BLAST on NCBI transcript from alignment at scaffold_228:341337..344667+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053292 ID=TCONS_00053292|Name=TCONS_00053292|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at scaffold_228:341337..344667+ (Clytia hemisphaerica)
GAAGAAACTTTCGGAAAAAACCcgagaaaaaacattttagatGAATTCGA
TCCAACTGACCTATTAAAACAAGTTGAAGAGCTAGAAAGATGTTTCAAGA
AAACAAGACCTGAGAGTCTTATTGAAGAGGAATATCAGGGAACCATAAAC
AGCGGTACAGGTTCACCTCATTTAACGTTAGAGTTCCCTACGGGGAGCAG
TATACGAGAGAACcctttgttcaaaaaagatttattgCTGCGTAAAAAGG
TCGACGGGACCACGTGCACAGATAGAGAGGAAAGTGTCAATTGCgaagga
gacaggggtgtaacaaATAGTGAAAGAAAAGATGACTTCAGACTCGACTT
AGATTTTCAAGAAGATGATCAAAAAAATATGGAATCTTCAACTCCTGTAA
CAGAAGATCAAGAAATCATAGAAAGtattcaaaaagtgcaaaacaCTTTA
TGTGAAATATCAAGAGAAATCGAACGTTCAAGCTCTTCACGATTAACCGA
ATGCACAACTAGTGATCGATATGAAGAATCCGATATAGATACTCCTCGAA
ACGAAACCGAATCCGATTTGAATGATGAATCCGTTTCGGATAACCGGGAT
CCAAATGATGTCATGAGAGATTGGTTATCTAATATTAAACCACCACCATC
ACCGGTTGTGGAAACTGAATGTTTAGTATCTGAAACAATGGNCACCACCA
TCACCGGTTGTTGAAACTGAATGTTTAGTATCTGAAACAATGGATCTTAA
TGCAGCAATGGAAAATAATTCTGCAATGAAATCTCAAGAAGAGAATCCAA
AGAATGATATTGAGATACCAAAAATACCAGACATCGTATCACCGAGAAAT
TCTACAACACCTTCCCACAATgaacttttccaaaaaatagATGAACTTAT
TAACTTTGATCGTCCtgattctgaaaatactcttgGTTCACACCGCTCGT
CAAGTGCAAAAAGCTCAAATCGTGATCGCTTGGATTCAGGATTACAAAGT
GTTAGCTCAGATTCAGGTTCACCTTATCCTTCACCGAACATCACGCGGGC
ACCATTGAAACAGCCGCCGAAATCAAATGCAATCCGTGAAGTAGCACGCG
AGGTTAATGACCACGTATTTCGAGATGATTCTGATTTTAGTGAATGGAGC
CCAGTGTCGACTTTAGAATCGAATCGAGGCTCGCGTATGTCAATCTCCAG
TCGTCCTAAACGATCACAAAGTATTTCTTACTCGCCTAGAAATCCAAAAC
AAATCCATTATTCGAACAGTGATGATACTAATGTGAATGCTGGAGGTCTG
GAAACCAGCGGAGAAGTAGCAACCATAGAGAAGTTTTTGAAACTGACCAA
TCAATATTTGGATAGCGATGGTGTATCAAGCATTTCTTCTAATATTAGTT
TGGACGATGTAAGTGagctttctttcttttatcattttgcACTTCAGTAT
ACACACCTTGTGTCACAGATTGTGGGATCTCCTTTCTATTCTTGTGAAAA
tgacgtgtatacacgtttttttataagaacataaggcttcgatgggcaAA
AGGTTAAGCATGCTacgaagaacattttaaggctttgctgactctaaaac
acccaatttcttacgaaaatggaccaaaatactcagaaaatggtgaaaat
atgaacattttaagaacattctaggcttaaaactcacaaagctaagaata
tccgaaggctccaaaaattttggatgttcttataaaaaaatgtgtatata
gTGTTATTGTTCTGATGGAGTTAAGGGTTAAACTTCTTGCTGTTTAAAGA
AATTTCCAATAAATAAAGTTTTAGGAATAAACTATTCTATCTCAAATAAC
CCAGGGTCTATTTTGTACGCACAAAGAAAATTGGCAAGTGCAAACATATC
AGGGAGACACTTATCTTGACATATGAAATCTTATAATCGGTAAATTGTTC
CCTATTTTTACATTACCGATACATAATCTTTCACAGTGAGTTCAGTNATA
ATCGGTAAATTGTTCTCTATTTTTACATTACCGATACATAATCTTTCACA
GTGAGTTCAGTTAGTTTTTGTACAATAATTATTAAATTTAGGATTTCTCT
Caggttttgttattttttgactgatatgttaatttaagttttctttttac
TCATAGTTGGCGATGCTACCAAACTTGAGAGAATCTCTTGAACAACAACG
AAAGGAGCTTGAGGAACAACGGAAAAAGCAAGAAGACTTTTTACACCAGT
TAGGTGATTTGCTACTGGAAGTTGTCACTTTAAAAGAAGAACAATCAACC
GTCCGTTCAAAACAAACTAAAGCgttaaatttattgaaaaagcaATTGGA
TGCTCATAAAAAGTCTCAATCAAAAGCTCACACAGATGTCATAAACAAAG
TAAAAAGCCTGGATGAAAAATTGAGCACTAGCCTGAATCTCTCATCAGGA
GAACATCAGACACAAATCTCACCAATTTCGCCGGGTCTGGGCTCTAAAGG
TTTTGTATACCCCGTGTCCGGGCTAAATGATTTTCGTCAACAGGAAGAGA
ATTCGCAACGAGGTCATATTATATGGAAAGTTTCAGACGTTATGAAAAAA
CTGACTCGAGTTAAAACGGGTAGTTCGGAAGGAACAGTGGTCAGCCCGTC
ATTCCAAACCGGAGAATACGGATACCGGATGAATGGGTGGTTATATTTAA
ACGGGCGTGGTAAAATGACTGGAAAATATTTATCATTGTATGTTTGCGTA
TTAGTTGGAGACTATGATGCCATTTTGAAATGGCCTATCAAACCATCGTA
TACTTTAACACTCATGGATCAGAATGGGGACTCGCATAAGAGGCACGACC
ACGTCAAAGTTCGTCGTGTCTTGGATATCGCCGGACGTGGAGCCAATGTT
ATATCTCAGTATGGTGGAATTCCGAGACCAAGTGATTGTACTAAAGCTCT
GATTGTTGGTTTTGATGATTTCATATCACACGAGAAACTTTTGGAAAGGA
GATATTTAGCGGACGACacattatttattaaaattgaAGCTAATATTAGC
TAACTTGTTGTACTATTCGTTATGATTGCTTCCTTTATATAGAATTCTAA
TATATTCTCTACTTCTGCTAGCCGTAAAATGGCTCTACTGTAATCAGGAA
ATTGACTCAGCGACCCAGTTCTAAAATTAAGAAAGAAACCAATATTTGGT
GGGGTGGTGGTTATTCTTAATCTACTTCGTATCATTTCCAGTATATTCAA
ATATAAAAACGACTCATTCCAATTTCCAATCAACTAAGAAAATATTAGAA
GAAAAATGTTTGTTAGGTTAATATACTGCAA Coding sequence (CDS) from alignment at scaffold_228:341337..344667+ >TCONS_00053292 ID=TCONS_00053292|Name=TCONS_00053292|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_228:341337..344667+ (Clytia hemisphaerica)
ATGGATCTTAATGCAGCAATGGAAAATAATTCTGCAATGAAATCTCAAGA
AGAGAATCCAAAGAATGATATTGAGATACCAAAAATACCAGACATCGTAT
CACCGAGAAATTCTACAACACCTTCCCACAATgaacttttccaaaaaata
gATGAACTTATTAACTTTGATCGTCCtgattctgaaaatactcttgGTTC
ACACCGCTCGTCAAGTGCAAAAAGCTCAAATCGTGATCGCTTGGATTCAG
GATTACAAAGTGTTAGCTCAGATTCAGGTTCACCTTATCCTTCACCGAAC
ATCACGCGGGCACCATTGAAACAGCCGCCGAAATCAAATGCAATCCGTGA
AGTAGCACGCGAGGTTAATGACCACGTATTTCGAGATGATTCTGATTTTA
GTGAATGGAGCCCAGTGTCGACTTTAGAATCGAATCGAGGCTCGCGTATG
TCAATCTCCAGTCGTCCTAAACGATCACAAAGTATTTCTTACTCGCCTAG
AAATCCAAAACAAATCCATTATTCGAACAGTGATGATACTAATGTGAATG
CTGGAGGTCTGGAAACCAGCGGAGAAGTAGCAACCATAGAGAAGTTTTTG
AAACTGACCAATCAATATTTGGATAGCGATGGTGTATCAAGCATTTCTTC
TAATATTAGTTTGGACGATTTGGCGATGCTACCAAACTTGAGAGAATCTC
TTGAACAACAACGAAAGGAGCTTGAGGAACAACGGAAAAAGCAAGAAGAC
TTTTTACACCAGTTAGGTGATTTGCTACTGGAAGTTGTCACTTTAAAAGA
AGAACAATCAACCGTCCGTTCAAAACAAACTAAAGCgttaaatttattga
aaaagcaATTGGATGCTCATAAAAAGTCTCAATCAAAAGCTCACACAGAT
GTCATAAACAAAGTAAAAAGCCTGGATGAAAAATTGAGCACTAGCCTGAA
TCTCTCATCAGGAGAACATCAGACACAAATCTCACCAATTTCGCCGGGTC
TGGGCTCTAAAGGTTTTGTATACCCCGTGTCCGGGCTAAATGATTTTCGT
CAACAGGAAGAGAATTCGCAACGAGGTCATATTATATGGAAAGTTTCAGA
CGTTATGAAAAAACTGACTCGAGTTAAAACGGGTAGTTCGGAAGGAACAG
TGGTCAGCCCGTCATTCCAAACCGGAGAATACGGATACCGGATGAATGGG
TGGTTATATTTAAACGGGCGTGGTAAAATGACTGGAAAATATTTATCATT
GTATGTTTGCGTATTAGTTGGAGACTATGATGCCATTTTGAAATGGCCTA
TCAAACCATCGTATACTTTAACACTCATGGATCAGAATGGGGACTCGCAT
AAGAGGCACGACCACGTCAAAGTTCGTCGTGTCTTGGATATCGCCGGACG
TGGAGCCAATGTTATATCTCAGTATGGTGGAATTCCGAGACCAAGTGATT
GTACTAAAGCTCTGATTGTTGGTTTTGATGATTTCATATCACACGAGAAA
CTTTTGGAAAGGAGATATTTAGCGGACGACacattatttattaaaattga
AGCTAATATTAGCTAAATGGATCTTAATGCAGCAATGGAAAATAATTCTG
CAATGAAATCTCAAGAAGAGAATCCAAAGAATGATATTGAGATACCAAAA
ATACCAGACATCGTATCACCGAGAAATTCTACAACACCTTCCCACAATga
acttttccaaaaaatagATGAACTTATTAACTTTGATCGTCCtgattctg
aaaatactcttgGTTCACACCGCTCGTCAAGTGCAAAAAGCTCAAATCGT
GATCGCTTGGATTCAGGATTACAAAGTGTTAGCTCAGATTCAGGTTCACC
TTATCCTTCACCGAACATCACGCGGGCACCATTGAAACAGCCGCCGAAAT
CAAATGCAATCCGTGAAGTAGCACGCGAGGTTAATGACCACGTATTTCGA
GATGATTCTGATTTTAGTGAATGGAGCCCAGTGTCGACTTTAGAATCGAA
TCGAGGCTCGCGTATGTCAATCTCCAGTCGTCCTAAACGATCACAAAGTA
TTTCTTACTCGCCTAGAAATCCAAAACAAATCCATTATTCGAACAGTGAT
GATACTAATGTGAATGCTGGAGGTCTGGAAACCAGCGGAGAAGTAGCAAC
CATAGAGAAGTTTTTGAAACTGACCAATCAATATTTGGATAGCGATGGTG
TATCAAGCATTTCTTCTAATATTAGTTTGGACGATTTGGCGATGCTACCA
AACTTGAGAGAATCTCTTGAACAACAACGAAAGGAGCTTGAGGAACAACG
GAAAAAGCAAGAAGACTTTTTACACCAGTTAGGTGATTTGCTACTGGAAG
TTGTCACTTTAAAAGAAGAACAATCAACCGTCCGTTCAAAACAAACTAAA
GCgttaaatttattgaaaaagcaATTGGATGCTCATAAAAAGTCTCAATC
AAAAGCTCACACAGATGTCATAAACAAAGTAAAAAGCCTGGATGAAAAAT
TGAGCACTAGCCTGAATCTCTCATCAGGAGAACATCAGACACAAATCTCA
CCAATTTCGCCGGGTCTGGGCTCTAAAGGTTTTGTATACCCCGTGTCCGG
GCTAAATGATTTTCGTCAACAGGAAGAGAATTCGCAACGAGGTCATATTA
TATGGAAAGTTTCAGACGTTATGAAAAAACTGACTCGAGTTAAAACGGGT
AGTTCGGAAGGAACAGTGGTCAGCCCGTCATTCCAAACCGGAGAATACGG
ATACCGGATGAATGGGTGGTTATATTTAAACGGGCGTGGTAAAATGACTG
GAAAATATTTATCATTGTATGTTTGCGTATTAGTTGGAGACTATGATGCC
ATTTTGAAATGGCCTATCAAACCATCGTATACTTTAACACTCATGGATCA
GAATGGGGACTCGCATAAGAGGCACGACCACGTCAAAGTTCGTCGTGTCT
TGGATATCGCCGGACGTGGAGCCAATGTTATATCTCAGTATGGTGGAATT
CCGAGACCAAGTGATTGTACTAAAGCTCTGATTGTTGGTTTTGATGATTT
CATATCACACGAGAAACTTTTGGAAAGGAGATATTTAGCGGACGACacat
tatttattaaaattgaAGCTAATATTAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053292-exon-scaffold_228-1491911889:341337..342744 | TCONS_00053292-exon-scaffold_228-1491911889:341337..342744 | Clytia hemisphaerica | exon |
| TCONS_00053292-exon-scaffold_228-1510915933:341337..342744 | TCONS_00053292-exon-scaffold_228-1510915933:341337..342744 | Clytia hemisphaerica | exon |
| TCONS_00053292-exon-scaffold_228-1575043694:341337..342744 | TCONS_00053292-exon-scaffold_228-1575043694:341337..342744 | Clytia hemisphaerica | exon |
| TCONS_00053292-exon-scaffold_228-1491911889:343493..344667 | TCONS_00053292-exon-scaffold_228-1491911889:343493..344667 | Clytia hemisphaerica | exon |
| TCONS_00053292-exon-scaffold_228-1510915933:343493..344667 | TCONS_00053292-exon-scaffold_228-1510915933:343493..344667 | Clytia hemisphaerica | exon |
| TCONS_00053292-exon-scaffold_228-1575043694:343493..344667 | TCONS_00053292-exon-scaffold_228-1575043694:343493..344667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:341337..344667 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00053292 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.623e-17 Identity = 56/175 (32.00%), Postives = 81/175 (46.29%), Query Frame = 2
Query: 1784 FRQQEENSQRGHIIWKVSDVMKKLTRVKTGSSEGTVVSPSFQTGEYGYRMNGWLYLNGRGKMTGKYLSLYVCVLVGDYDAILKWPIKPSYTLTLMDQNGDSHKRHDHVKVRRVLDIAGRGANVISQYGGIPRPSDCTKALIVGFDDFISHEKLLERRYLADDTLFIKIEANIS*L 2308
F+ E S G +IWK+ D ++ G + P F TG +GY+M +YLNG G G +LSL+ ++ G+YDA+L WP K TL LMDQ S +RH G +P+ + G F++ L Y+ DDT+FIK+ + S L
Sbjct: 406 FQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQP-FYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQG--SSRRH-----------LGDAFKPDPNSSSFKKPTG-EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 565
The following BLAST results are available for this feature:
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