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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053289 ID=TCONS_00053289|Name=TCONS_00053289|organism=Clytia hemisphaerica|type=transcript|length=1296bp
CTCCCACGCACTTGGCGTCACAATCGTGTCAATATATCACTCAAAGTTAG
CGtaattgttaaaaagagaaTATCTAAATTTCGCTTAAACAGGATACTTA
AGTTAGCGAAATGGGTAGGAAGTCATTACCAAAATAATTCCCCAATGACT
ACttaaaagaaataaacaaatttttCGCTTATTAGTCTTGTCAAATGATT
AATGTTTTGTAGTAAAAATCAATTGAGTTTTGTTCAAATTAACGAGCAGT
TAGCAGCGCCgtgaagattttcaaatttgtttgaattacAAGGAAGAATT
CGTCAAGGACTTTGATTGGAAATTGACACTGGGATTGGAAGAATTTTAAC
CGTTCCCGTATAATTTTTTTGGGACAATAGAATCTGGAATTTCTTTATAC
AGAAAAAGATGCagaaaactttaattttaatcCATATTTGTGTAACTTTA
TATCTGGTCAGCAGTAAAGTCACATCTCAGCCgACGTGTACAAATATTGG
TGATGAATGTCGTGACAATTGCTGCAACGACCGAAAGTGCAAATACTTTT
TCTTCCATTCAGTATGTTGCAACGGGAATACTGATCATGACCAAAAATGC
AATATCGATTCGGATTGTTGTTCGGGTATGTGCCGTACAAACACCGCCAT
AAACCCGCCCGCCAAGCAATGCTATTGTTATCCAGATGAATACGAAAGTT
GCGAGACAAGTAATGAATGTTGCAGTGGTAAATGTGTTAGCTCGAAATGC
ATTACTGATGAAGATTCGATTAACCCACTGGGAactaattgaaaataatc
aaggaTGTTTTGCGGTTTTCACAGCTTAAACATATCGGTAAAACGTTAGT
CGGCTGAAAGGATTTTCTTGAAACAACTTCATTTCCCAGCgataattttg
tcagtttttgctgaCGAATTTTCTAACGGTTGTTAGAAAAATATGTAGCC
AACTTTCTTGTGATTTCAAGCTCTTAACATAAACGACGACACCGAAatga
aaaaattccaaaatactaagaaaaggCGTTGGGTTGTTTAGCTTTTGAGT
CATTTAGAATATATTTGTCACCATAGTAATAAtctcaaaacgaggcaagt
gatgttaatgaagtaatttatgaaaaggtctattgtcttTTCTATAGTGA
TAATAAATCCCTTCGAGTTGGATCAATCTTTTCCCTGATAAATcttgata
aaattatctttttgcTGGGCATTACAGACAAAAAAGCATCAATTGGGTTa
aatatcaattttgtaaataataATATCATTATATGTAATGTAAAAC Run BLAST on NCBI protein sequence of TCONS_00053289-protein >TCONS_00053289-protein ID=TCONS_00053289-protein|Name=TCONS_00053289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MQKTLILIHICVTLYLVSSKVTSQPTCTNIGDECRDNCCNDRKCKYFFFH
SVCCNGNTDHDQKCNIDSDCCSGMCRTNTAINPPAKQCYCYPDEYESCET
SNECCSGKCVSSKCITDEDSINPLGTN Run BLAST on NCBI transcript from alignment at scaffold_228:313819..315892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053289 ID=TCONS_00053289|Name=TCONS_00053289|organism=Clytia hemisphaerica|type=transcript|length=2074bp|location=Sequence derived from alignment at scaffold_228:313819..315892+ (Clytia hemisphaerica)
CTCCCACGCACTTGGCGTCACAATCGTGTCAATATATCACTCAAAGTTAG
CGtaattgttaaaaagagaaTATCTAAATTTCGCTTAAACAGGATACTTA
AGTTAGCGAAATGGGTAGGAAGTCATTACCAAAATAATTCCCCAATGACT
ACttaaaagaaataaacaaatttttCGCTTATTAGTCTTGTCAAATGATT
AATGTTTTGTAGTAAAAATCAATTGAGTTTTGTTCAAATTAACGAGCAGT
TAGCAGCGCCgtgaagattttcaaatttgtttgaattacAAGGAAGAATT
CGTCAAGGACTTTGATTGGAAATTGACACTGGGATTGGAAGAATTTTAAC
CGTTCCCGTATAATTTTTTTGGGACAATAGAATCTGGAATTTCTTTATAC
AGAAAAAGATGCagaaaactttaattttaatcCATATTTGTGTAACTTTA
TATCTGGTCAGCAGTAAAGTCACATCTCAGCCggtaagaaattgaaaaat
tattcgAATCGCTTATTTAGTAAATAtcttattgatattttcatttttat
aatattgaGTAATCTGNTGAATCGCTAGTAAATAtcttattgatattttc
atttttataatattgaGTAATCTGAACAGCATACTTCTGAGAAATCTTCT
ATTAATGTGACCTAATGACCTAGAGTGTGTCGCTAATATTCATTCGATCC
GAAACCAATATAGtatttaacattttgaccaCGCAGTCTTTAATTTCGAA
AATTGACAAACCACAGGATTTCTTTCTTATGTATGTGAATGAGCTGCAAG
CTGCAACGTACGTTGGTTTATAATAATGGCTGTTACACCTTTAACTGATG
GTAGAAAGATAGAAAAGCAACACTACGGGGGAGGAGAGTTGTTTTCTATA
GCCGTTACATAGATTAACGATAACGGAATACTAATTAACTCTACTCTTTC
TTGTATCTTTTTATCCCTGAGAACGTAGCTCGTATAAAAATCCTGGTCGG
GAagctttttgttagatttttcctttcttaataccaaaagataaaaattg
atttgctcagtttttgatcacgttaccaagtactcctctACTAAGGCttg
atttaagatttaatcacatgattaaaaagtgagcaaaaaaaattcctcaG
CGCAAGTTCAGGttagaaacaatggaaagaaactaAAGCTACCGGgttat
tttatataaaaacctCCCTTCAGTAtattataatcaaaacattatttCAT
AATCTTTTCAGACGTGTACAAATATTGGTGATGAATGTCGTGACAATTGC
TGCAACGACCGAAAGTGCAAATACTTTTTCTTCCATTCAGTATGTTGCAA
CGGGAATACTGATCATGACCAAAAATGCAATATCGATTCGGATTGTTGTT
CGGGTATGTGCCGTACAAACACCGCCATAAACCCGCCCGCCAAGCAATGC
TATTGTTATCCAGATGAATACGAAAGTTGCGAGACAAGTAATGAATGTTG
CAGTGGTAAATGTGTTAGCTCGAAATGCATTACTGATGAAGATTCGATTA
ACCCACTGGGAactaattgaaaataatcaaggaTGTTTTGCGGTTTTCAC
AGCTTAAACATATCGGTAAAACGTTAGTCGGCTGAAAGGATTTTCTTGAA
ACAACTTCATTTCCCAGCgataattttgtcagtttttgctgaCGAATTTT
CTAACGGTTGTTAGAAAAATATGTAGCCAACTTTCTTGTGATTTCAAGCT
CTTAACATAAACGACGACACCGAAatgaaaaaattccaaaatactaagaa
aaggCGTTGGGTTGTTTAGCTTTTGAGTCATTTAGAATATATTTGTCACC
ATAGTAATAAtctcaaaacgaggcaagtgatgttaatgaagtaatttatg
aaaaggtctattgtcttTTCTATAGTGATAATAAATCCCTTCGAGTTGGA
TCAATCTTTTCCCTGATAAATcttgataaaattatctttttgcTGGGCAT
TACAGACAAAAAAGCATCAATTGGGTTaaatatcaattttgtaaataata
ATATCATTATATGTAATGTAAAAC Coding sequence (CDS) from alignment at scaffold_228:313819..315892+ >TCONS_00053289 ID=TCONS_00053289|Name=TCONS_00053289|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_228:313819..315892+ (Clytia hemisphaerica)
ATGCagaaaactttaattttaatcCATATTTGTGTAACTTTATATCTGGT
CAGCAGTAAAGTCACATCTCAGCCgACGTGTACAAATATTGGTGATGAAT
GTCGTGACAATTGCTGCAACGACCGAAAGTGCAAATACTTTTTCTTCCAT
TCAGTATGTTGCAACGGGAATACTGATCATGACCAAAAATGCAATATCGA
TTCGGATTGTTGTTCGGGTATGTGCCGTACAAACACCGCCATAAACCCGC
CCGCCAAGCAATGCTATTGTTATCCAGATGAATACGAAAGTTGCGAGACA
AGTAATGAATGTTGCAGTGGTAAATGTGTTAGCTCGAAATGCATTACTGA
TGAAGATTCGATTAACCCACTGGGAactaattgaATGCagaaaactttaa
ttttaatcCATATTTGTGTAACTTTATATCTGGTCAGCAGTAAAGTCACA
TCTCAGCCgACGTGTACAAATATTGGTGATGAATGTCGTGACAATTGCTG
CAACGACCGAAAGTGCAAATACTTTTTCTTCCATTCAGTATGTTGCAACG
GGAATACTGATCATGACCAAAAATGCAATATCGATTCGGATTGTTGTTCG
GGTATGTGCCGTACAAACACCGCCATAAACCCGCCCGCCAAGCAATGCTA
TTGTTATCCAGATGAATACGAAAGTTGCGAGACAAGTAATGAATGTTGCA
GTGGTAAATGTGTTAGCTCGAAATGCATTACTGATGAAGATTCGATTAAC
CCACTGGGAactaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053289-exon-scaffold_228-1491911889:313819..314301 | TCONS_00053289-exon-scaffold_228-1491911889:313819..314301 | Clytia hemisphaerica | exon |
| TCONS_00053289-exon-scaffold_228-1510915933:313819..314301 | TCONS_00053289-exon-scaffold_228-1510915933:313819..314301 | Clytia hemisphaerica | exon |
| TCONS_00053289-exon-scaffold_228-1575043694:313819..314301 | TCONS_00053289-exon-scaffold_228-1575043694:313819..314301 | Clytia hemisphaerica | exon |
| TCONS_00053289-exon-scaffold_228-1491911889:315080..315892 | TCONS_00053289-exon-scaffold_228-1491911889:315080..315892 | Clytia hemisphaerica | exon |
| TCONS_00053289-exon-scaffold_228-1510915933:315080..315892 | TCONS_00053289-exon-scaffold_228-1510915933:315080..315892 | Clytia hemisphaerica | exon |
| TCONS_00053289-exon-scaffold_228-1575043694:315080..315892 | TCONS_00053289-exon-scaffold_228-1575043694:315080..315892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:313819..315892 + |
Blast
The following BLAST results are available for this feature:
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