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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053288 ID=TCONS_00053288|Name=TCONS_00053288|organism=Clytia hemisphaerica|type=transcript|length=1450bp
CTTTACCTTTCTGTATCGCATTCAAAGACCTTGTATTCTTATGTCATTGT
ATTCGGCAGATTTTTGTATTTGGTAGCTTATTTATATAGAATCTTGCTAC
TTCAAGGCTTGCTTGGAtacatattttgaaaacaaagtttttgtattttt
catttaaaggaattttagaaaaataagtaaaaagtaagtaatATCAGAAG
TAATAATGGAGAACCAGTCTTTGGAATCGCAGACAACAGAAAAGGTTGCT
ACCCTTGGTGAGCGAATGAAAACATTCGAGCGTACAGAACAAGTCGAACC
GTACCAAGCATTCATTGTACGAGCTGATGGCAATCGTTTCTCAAAATACA
CCAAAGGTTTACAAAAACCTTTCGATGAAGCATTTCAACGAGCTATGGTC
AAAACAGCCAACGGATTGATGGATCATTTCAGCTGTGCTACCATTTTTGT
ATGTTCAGATGAAATTAGCCTGGTTTTCAGTCCAGTATGCAGTCAAGAAG
AATCAGAGGCTAACCAAGCATCTAACAACAAACAAACGCACATTTACTCT
GGGCGTCATAATAAGATCGAAACATTGGTTAGCTCAAAAGCCTCTGTTCT
CTTTAACAAGTTTATGTTGGAAGAAgtcaggctaaaaagtgccgaAAACC
CTGGTGTATATGCCAAGACTTTCTTAGATAGAGTTGAAAGCCAAGATGCT
ATTTTCGATGCCCGCTTGATTCCGTTTCCTCTAGGGAGCGAATTCGAGAT
TGTCAATAATCTAATATGGCGTTCTTGCTACGATTGTCATAGAAACACTG
TTTCATCATACGGTAGACACGTGTTAGGTACAAAAGCGTGCGAAAATAAA
AAGTCTCACCAAATGATTCAActtatgaaaattgaaaaagatttcgATTT
TGATGAGGTTCCCACGGCGTACaagtttggtgtttttggtaAAAAAGCTT
TACATGTGCTAACTAACGATCAAGGAGAAAATTACACTCGTCATaaacat
ttcaatttttgcaCCAATCTTGTGAAAGAAGACCGAGATTGCACTTTGGA
cttatttatgaaaaaatattttgaagaggGACTAATAATGCATGATGAAT
ATGTGTTGTAAAAGTCAGAGATTGAACATTTTACATTTTGGTTATTCTTT
ATAAGAGCTAGACGGAGTTCTTTATTTATTACAATGTCCAACTGGTACAA
GAGAAGTCGATAATGTTTGTCAACCGTGTTCAGCTGGATACTACCAAACA
AAAGTAGGCCAAAGCGCATGCGTGAAATGTCCGTTCGGTCATACGACAAA
AGAAGTTGGGACTACCAGTCCTCATGATTGCTTTGTTAAgatttaattat
tattttttaatatcCTTAAAATATTGAGaatgaattttttaaagttatAT
ATAATTAGCTTATTCATTAGTAAGGGGTGATTATATATCGAGTGACCCAT Run BLAST on NCBI transcript from alignment at scaffold_228:309026..312348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053288 ID=TCONS_00053288|Name=TCONS_00053288|organism=Clytia hemisphaerica|type=transcript|length=3323bp|location=Sequence derived from alignment at scaffold_228:309026..312348+ (Clytia hemisphaerica)
CTTTACCTTTCTGTATCGCATTCAAAGACCTTGTATTCTTATGTCATTGT
ATTCGGCAGATTTTTGTATTTGGTAGCTTATTTATATAGAATCTTGCTAC
TTCAAGGCTTGCTTGGAtacatattttgaaaacaaagtttttgtattttt
catttaaaggaattttagaaaaataagtaaaaagtaagtaatATCAGAAG
TAATAATGGAGAACCAGTCTTTGGAATCGCAGACAACAGAAAAGGTTGCT
ACCCTTGGTGAGCGAATGAAAACATTCGAGCGTACAGAACAAGTCGAACC
GTACCAAGCATTCATTGTACGAGCTGATGGCAATCGTTTCTCAAAATACA
CCAAAGGTTTACAAAAACCTTTCGATGAAGCATTTCAACGAGCTATGGTC
AAAACAGCCAACGGATTGATGGATCATTTCAGCTGTGCTACCATTTTTGT
ATGTTCAGATGAAATTAGCCTGGTTTTCAGTCCAGTATGCAGTCAAGAAG
AATCAGAGGCTAACCAAGCATCTAACAACAAACAAACGCACATTTACTCT
GGGCGTCATAATAAGATCGAAACATTGGTTAGCTCAAAAGCCTCTGTTCT
CTTTAACAAGTTTATGTTGGAAGAAgtcaggctaaaaagtgccgaAAACC
CTGGTGTATATGCCAAGACTTTCTTAGATAGAGTTGAAAGCCAAGATGCT
ATTTTCGATGCCCGCTTGATTCCGTTTCCTCTAGGGAGCGAATTCGAGAT
TGTCAATAATCTAATATGGCGTTCTTGCTACGATTGTCATAGAAACACTG
TTTCATCATACGGTAGACACGTGTTAGGTACAAAAGCGTGCGAAAATAAA
AAGTCTCACCAAATGATTCAActtatgaaaattgaaaaagatttcgATTT
TGATGAGGTTCCCACGGCGTACaagtttggtgtttttggtaAAAAAGCTT
TACATGTGCTAACTAACGATCAAGGAGAAAATTACACTCGTCATaaacat
ttcaatttttgcaCCAATCTTGTGAAAGAAGACCGAGATTGCACTTTGGA
cttatttatgaaaaaatattttgaagaggGACTAATAATGCATGATGAAT
ATGTGTTGTAAAAGTCAGAGATTGAACATTTTACATTTTGGTTATTCTTT
ATAAGAGCTAGACGGAGTTCTTTATTTATGTAGGCTTAATTGGTCCTATT
TTTTGGTAGTTTGAGGCTAAGTttgttcttttgtgtttattttttatgga
aaattgGGGAACACCATATTTTTAATGATGGTTTCATGAAAATCCAGTCA
AGGCTCAGGGTTGTtcttaaactgttcttattttttgatgtttttgagcc
tcattattcttttgaaaattgttcATGAAAATatagagaaaaaaaagttt
gaataatGAACAGACCAGAAAGTCTCAACAATAGTTTACTATTTTTGAAA
GatgattaaaggttttgtttaatGAGTGATAACGTTTGcctactcatcaa
ttttgatttacaagctttttcatattggatttATACGAATGTGGcgcaag
attgatcagaaaaacattttttttcttatatcaGTAAAATATAACGATAG
GTTGACActatcctgatatgaaatatgtgtctgatatgaaacgggaacac
ttatgtaaaaataaaacctttaagaaataaatactatttgtaagatttta
aaattctttggaaattttgaacAGATATTTATTTCAATTGAGTTGCGAAA
TCTGAAAAACAATAGTTTAGGGGAGCTCCACAGTTATGGCGAGGGAGCGG
AGTTGGTCCTTTTTCGAACAAAGAGACAGAATTTggacagaatttcaaaa
attagtttCTTGTGAGCTGTGTTTGATTTTGTTAGACGGGATGGCGGGAT
TTGGTACCCGTAAATCCTTGGTCTGACTTTGCCAATATTTCGAAAGCTGA
TTTAAAGTCTCTGGCAACAAAAAAAATCTGCATCGAGTATAGACTGCCAA
AGTGATACCTATCTAACATCATTACATCCATATAACTTTTATTGGAACAT
AAATTATGATTTGTCTGTCCTTGGTCTATTCTGCTAGCATCACTCTCTGC
TCTAAAATGGGATGCAATGatggaccccagccccactgaaagATTTGGAC
AAAAGACTTTGTCCCCAGTGGGGAAtcaccctggaatttcagccccattg
gGAAATTcgttttgatttcatccccactcgaaattcaaaattgtactttt
aaccttggaacagtagaatttctatccctgTTGGGAATTTCAagaggaat
ttttatccctgcTGAGAAAAgcgttccaccggggctgtgagacaggggtg
aataGACGTTAGATGGAAGAGGTTTGGAACCTTTTGTCCTTGTTGGGTAT
ATACTGTATTACGTACTTTGACCTTTATCTCAACCCAGTGAGAATTTTTC
AGCCATCGGGAAGAAAGTGACGAAGCTACAAACATACCAATGGGAATAGC
AAATCTCTTAGCTTTTTAGCGAGTGGGGATTTCAAATTCTATGATTTACA
GCTGAAAATTCCATTGGGcattatcaaaattcaattaaaaGGGGTAACAA
ACGGGTCTGAGTTTAGTTGTATAGTCGATTGGTattaaacacccccttct
cacagtccCCTGGGACCCCTtttcactggaaaaattgtctagaatttcgt
ccccagtggaaaattatcctccaatttttgtctccagtgaaaataatcaa
ataaaccagtcctcactgcaaaatgttatgctttctatccccactgaact
ttctgacttgaaaacaaaagagttGAAATCCCTAGCCATAAGAAATATGG
AAATTTCAATCCCCATTGTGTTTCAGTTCGTTATGTTTACCCATACTGGT
TTAAAAAATCCTACCGNgtagccataaaaaatatggaaatttcaatcccc
atcgagttttagttcgttatttttacccccactggttgaaaaaatcctac
cgggtctgtgagaagggggtgttattaaaaaagatatttgtcTTTCTTAC
AGTACAATGTCCAACTGGTACAAGAGAAGTCGATAATGTTTGTCAACCGT
GTTCAGCTGGATACTACCAAACAAAAGTAGGCCAAAGCGCATGCGTGAAA
TGTCCGTTCGGTCATACGACAAAAGAAGTTGGGACTACCAGTCCTCATGA
TTGCTTTGTTAAgatttaattattattttttaatatcCTTAAAATATTGA
GaatgaattttttaaagttatATATAATTAGCTTATTCATTAGTAAGGGG
TGATTATATATCGAGTGACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053288-exon-scaffold_228-1491911889:309026..310204 | TCONS_00053288-exon-scaffold_228-1491911889:309026..310204 | Clytia hemisphaerica | exon |
| TCONS_00053288-exon-scaffold_228-1510915933:309026..310204 | TCONS_00053288-exon-scaffold_228-1510915933:309026..310204 | Clytia hemisphaerica | exon |
| TCONS_00053288-exon-scaffold_228-1575043694:309026..310204 | TCONS_00053288-exon-scaffold_228-1575043694:309026..310204 | Clytia hemisphaerica | exon |
| TCONS_00053288-exon-scaffold_228-1491911889:312078..312348 | TCONS_00053288-exon-scaffold_228-1491911889:312078..312348 | Clytia hemisphaerica | exon |
| TCONS_00053288-exon-scaffold_228-1510915933:312078..312348 | TCONS_00053288-exon-scaffold_228-1510915933:312078..312348 | Clytia hemisphaerica | exon |
| TCONS_00053288-exon-scaffold_228-1575043694:312078..312348 | TCONS_00053288-exon-scaffold_228-1575043694:312078..312348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:309026..312348 + |
Blast
The following BLAST results are available for this feature:
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