TCONS_00053274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053274
Unique NameTCONS_00053274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053274 ID=TCONS_00053274|Name=TCONS_00053274|organism=Clytia hemisphaerica|type=transcript|length=2430bp
atacaatttttctatttttccttttttttgcaaaagttctaggaatgaaa
ataaagggataatgatgattgaatactatccattgatgacccgcggcact
atcgtaaagttagaatcgcttcgcatgctcttcgcttgagaaaatgattg
acagattgaagtttttcacccgcgcaggagttcgcggagcgctctcggct
caatcctcggaccccGCTAAAAAtagtagactgagctgtgatacatcatt
tcaatggaagttgttggaatgtttacaaggctcttgacagaaaatcgttt
gttttattgtcaatgatgacagtgcggttattaactTTGTTatatctgac
aaattgatgtttatGACACCAAAACTGAAATAACAAACCGTCAAACACAT
AATGGGCAACTCTAGTGGTAAAGACAGTGTGCCAATCAAACAAGATATTG
ATGATGGAGAGGATCTATTGGACCTGTCTGGCCCTTGCAAAGTGAAAAAT
ATCCATATTGATGGTCTTAAGAAATCTCGCAATGAATTAGTCACTACAAC
TTTAGAGGACCTGTTTAAAGCAAATACCTTTGAAGATGTGATCACCAAAG
CTCATTTATGTAAGCTGAAATTGGAACGATTGAGAGTTTTTTCGAATATT
GATGTTTTCATTGATGTGGCGGATGAGTATAGTGACCAACATgagtttga
tgttttttatcttGTCAAAGAATCACGAAGTTTTCAAGCCTCCGTTGGTA
CTACTGTTGGTAATAATGAAGGTAATATGGTGGTGACCGGAGCTGTTAGT
AACCTCAAAGGAACTGGTGAATTGGTCAAAGCGAATATCTCTTACGGGAC
TGCACAGACCACTTCGTATGAATTCTCAATGGGTAAACCAATCGGCTATG
ATCCAGACAGGAGATTGTCTTTTAAAGTATTGAAATCTATTTCTGATTTG
AGTCAATCTTTTTACAAAGATACGACCAAAGGTCTTGGTCTGGATTTCAC
TATCCCAAGCTCTATTGGTCTTCATACTCTTGGATGGGACTTCAATTGGC
GTGAAAACAGCGTTTTGCCGTCAGCTCCATTCGAAGTGCGCGAGTTTTCA
GGCCATTCTCTCAAATCAACACTGAAGCATTCGTTTGTCAGCGATGGACG
TGACGATTGGGTGTTACCTTCACACGGACATTTGTTTAAACATTCAATCG
AAGTCAGTGACTTTATCGGAAATGTACGGGCATGGAAAAGTAATGTCGAG
TTGCAACTCAATAAAGAAATCTTCGACCGAGTTGTGTTGGCGGGCTCCTT
CCAAGCTGGCGTTACTCAATCGCTTGACGATAAACCGCTTATGATCAATG
ACCGCTTTTTCATCGGTGGTCCTTCTTCTATTCGAGGATACAAATTCAAA
GGAATCGGATATCAAGCCGAAGTAGATGGAATTAATTCGGCAGCACTCGG
TGGTGACTTATTCTGGATGTCTGGCCTACATGTCTATACGCCACTTCCGT
TTTTGAACTCAGGTAAAGACTCTTTCGGATCATTATTCCGAATGCATTAT
TTTTTGAATGCTGGTAATCTTACCAATATGAATCAAATGAATGCTAAAGA
CTTTGTGATGAACCCTAGATGGTCTTATGGACTTGGTATAATGTTTATGT
TAGGTGGAATGGCTCGTCTAGAGATCAATTATTGCTTACCTAAGAATGGC
AGACCTGGTGATCAGATATCTGAAGGATTCCAAGTTGGAGTTGGTTTGAA
TTTCCTTTAATGATTTCCCAGAAATTATCACTCgtcattttgaccatttt
gaccattttagCGCTTTTTCTCTGATGGATTACACCCAAATCGGAGTAGG
TTAGAATCTATGTTCAAGATTCTGGAAAAAGAGAATACATAATAGATTGC
ACCTTTACAATCGTCATCGTTTTGACCATTCTAGctattttatttttctc
aacAACAAGTCAAACTTGTCGATATAGTGCTCAAACTTAgcgtttgttgt
tttttttgtttagtgTATCAAGCCCAATGTCGATGCTAACGAAGTCTTTA
ATGATAGAAAAGTTCATTTACTTGCATTTACTTCAACTTTGTCTCTTGAA
TACGTTGAAATGAAGTTAGGTCTTTTTCGTGCGagtatattttgaattta
aacttcCCTTATAGTGATCTCAGAAATTATAAAACTCGTGCTCCGTTCTT
CTGATTAGGATGGGTCTAGACTTTGAATTTTAATGCCTCTTAGATTAGAA
actattttttgttcttttttatagttcttgtttttttcttaGAGTGAGTA
CTGTATGCAAgtaatttttagaattattttgacaatttattatatttttt
tgaaacaacTAGAAATAAATCATAGGCATTTTGTCCTTTCTCTAGAATCA
CTGTCTtgctttaaaatatttatatcCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_228:176557..185660+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053274 ID=TCONS_00053274|Name=TCONS_00053274|organism=Clytia hemisphaerica|type=transcript|length=9104bp|location=Sequence derived from alignment at scaffold_228:176557..185660+ (Clytia hemisphaerica)
atacaatttttctatttttccttttttttgcaaaagttctaggaatgaaa ataaagggataatgatgattgaatactatccattgatgacccgcggcact atcgtaaagttagaatcgcttcgcatgctcttcgcttgagaaaatgattg acagattgaagtttttcacccgcgcaggagttcgcggagcgctctcggct caatcctcggaccccGCTAAAAAtagtagactgagctgtgatacatcatt tcaatggaagttgttggaatgtttacaaggctcttgacagaaaatcgttt gttttattgtcaatgatgacagtgcggttattaactTTGTTatatctgac aaattgatgtttgtaagtgcactttatagttttgattcccattgaagaat catattctggttttcatgttattagatgctgttttagagctttaggtcta cactgcagGAAGATTAGTCTGATACAGAAttttataaacagtctgtgtgt gaacccttgttgacagactttctggaCTTtagaaacccaggcaaacacac ataatcaacttaccataaaagcagctagttcgaaacgcaggtcacaggtc acaggtcaacaggtcacaggtcaacaaagtgcagaccggaaaaaagataa taagatcataacatatacataacataacatcaatacataacgcattaaat tacaaaaaagtaatttagtaatttaaaatgttatttagatattataaaat gacaattgaataaaaaaagctggtaaaatcgtaatcctcaaaaatcgaag ttccagcctcactgaatgacaatttttgacaaaaatgttgacagaatcac aaaatatcatgtcttacaagagaaaaacaccaaaaatatttagcataccg aatttgatgataacaatatggctggatttaaaattacaccaatcagaagc tcgtgagttctctgagaaggtagttttagagcgatttgttttattatatg taaccatcatataacattacaaacattacaatatGTAgtatacctgttat acgtataatatggttttaaattttctggtctgcgttatacacggcgcaaa ctgcgaaagatcgataaaagcacatggttaaattttgatgtttgaaatgg ttttatatggatgaaattgcttgagaattatgtttttgataattttttgt gttttccaaacattttcctctgcaatgacattgattagattcaacctgtc atcactgacctgtgacctgtgacctgtgacctgcgtttggAACTAGCCGC CATAAAAGCTCTTTCACATGCTCTAAAGGCTATCAAAACTATTAAAAACc gcatcaaaacatcagccacatgtatttagacttccagccaacagccattt tgtttcaaaatgaatccatgttttcattttcatttgttttccttttttct gcagagtcagctttttccataaattatgcgcatGCATCGCAATTATCAAA ATGCGTGCCAAaatactgctaagtaatacgcacaAAATCTGGCCAATCAG ACTGAActtgcattgcagggaaaaatctccctgcaggcgcaTGGAAAATT CTAGTTGTCATCAACCATCCTGTTGTTTTGTTTCCGCAGAAATTCTAAGT CCCGAATAGCATGGATattaaatttacagaccaggaTAATCAACCGTAGT GAAGCAGgttcagtgaagtcaagtttgaagatattctttattagaaaaac agttaaaagcagtcaaaacgcaatttaccttacctcctgagtttgtcttt gttatgctaaaatataacaaacctttgtcatgctgtctaattacaaaaac ctccaatcaccACTTCTCCGtcatcttgtttcactttaaatgccgtgttt taaaattccttagctacattaaacgtacggaaaaggttttctccaggttt tttcaatcgcgggattaaactacgagggcggttccgcccgcttatttttc ttttggcgTTGAGCCCTggggatacttaacaataaaagagattttaagat taatgttgaaaagcatatttttcgataaatttaggcaatactcaacaaaa aataaggtggtttttaaacaaatctttgacaaattggtgtttctttctgt tctaatatatgcaaatcacgttgaaaaagaatatatttccgcctttactt tcactttcgctttcgtgttacgcgattccaataggatgaataccgctcgc taacaaattctgattggctgtaacaggctgtaagtctttagcttcgggat tctgattggatcatttcccgcgtcacggttgaattttgattggttgaaag tttctgagcgtgagttctgattggatgaatacatgaaaagtaaacaatag tatgtaagtattttgcttatcaaaatctaaagaattccagggggttttat ttactttgcatgacgataattaagcctacaaaacatcgagaaaaaaaacc aacatagaacaggtgtattttgtaatgtagaatatgatagcgtgaatctt tttgaaattctatgtcaggattttttctcaatgcccNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCcggggtacccgttgctaagaccttatgttaaaaacga aagcgattacggcaaaaagtagcgattttcgtaatacctcaaatattgat acttgactgtactgagGTTACCTAATACGACCTCGGTCGGGAAACATTTC CCGTTTACGATTAGGAAacgatttgatattttttatcaaaacatattCCC TTTGGGATATGCTTTTTAGACTTGatcttcaaatcttcaaatgaaaagga aaattttgagaaaaaggggAAGCTATaaacatagtgtcctcccccccttt ataaagggggggggggcgaaaccaattttccaattttgaatggggggggg ggggaaaaaaaaaaaaagggcccccccccccctttaaaaattggaaaatt ggtttcgccccccccccctttataaagggggggggggcgaaaccaatttt ccaattttgaatgggtgagggggggaatagaaaacaatgtttttaggcaa atttgggccaaaaaatggctaaaaacgggttttttggactttgtgaaata ttggatcattgtttttttcagattattttgcatgaaagtaggtaaaagat ggctcaagcagatttatgttaaaaaagaatttttcaacccaaaaaaacgc atatttatctataagaatcactattaataagcatacattaatgttcttag ccaaattactaaattttttgatgagattgatgttttttttgctcacaaag tttTGAATATGAATAATTTTGGTTTCGAAACGTTTTTTTAtcagaaacaa acgactaattttaatagatcgtcactatttgtgttctgaatgattgttta acggtcatgctcacatAGATATctattatatatgtgttaaatgcataacc aggtaggtccataaaagtatcacttgtttctttTGATATAAAGTGCTTCT TTAACCAATAAAATGTTCCAATTTGATGACGAGTCCAAAATTTCAACATT GTTTTCAATACAGCTCAAGttgtaacttttgatttttgatttcgtGAGTT TTCTAAGACCATGACGTAATTGTGTTGTGATAAAACTAAATTCAGGGCAA CTATTTAGGTGAATCTGAATGGCAGAATTATGTTTGGGTGTAACGTTTCT CCATAACTttctttcaagattttgaagtaGGCTATCATAACCTTCTCCAA AGTAAGTTAATTTAACCCAGATGTTTGATACTTTAGCAGTCTCCTCATTA GGTTTTCGTCTTACGTTATTCATAAGAACTTGATGAATAATCGAGTTACA GATATGCTTGGGAAGGCCATTCCAAGATGCATATTTGCGTATTTTGTTGA GTTCATTAGGTAATACGTTATCGGAACAAAGTCTGTTGGCGCGTGTTACA AGGCTTCTTATCCAGGATATACGGTATCTCCATGGGGCAAAGCTTTCAAA ATTAATGTATTGGCCAGTATTTGTGTCTTTTCTGAATATGTTTAAAACCA TCTGGTGTGATTTCTATATTTCGGACTTGCTTTAGTCTTATTTTACTTGA AGTTATCAGCTGGTCATGGCTTCGTGTAATTTTAGCCTATTCATTTTTGG TACAATGGataaatgatttaaaaattatcaaaattcatCTAGTCTAACAT AAAGTATATTTTAAAGGGGCCGTTAAGATAGAGCTTTTCTTACGGTGTAC CAGGTGTGccagaaataagttaccctccttgatttgatattgtaggcagt agcagaaagatttttcaaagattgttgtttcggaatcattcagaggaaag cctaacttaaaatttggtgtattactcAGGGGGGTACCAAGTTGTGGTTG TGGACCAGTGCCGAAAAGACCACTTAGTACCCTGGTACTAAGTTGAATTT ACCACTTAAAGTAGGTATACCACCCCTTAATACCCGGTACAGTCTTGATA TCACCATTGAAAAACGACATACCACCGTTAAAGTACCCTATACTAAACTG ATTTTCGCCCtcaaaataggtataccaccctTTAGTTCTTAGTAGTTTAC TTTCTGGTCTTTGGTTTCTGGTACTTTCTGGTACATAtccttaaaatttt ctaaaaagcttTACAACATTGTATTAAAAAACATTCCACACCACTCTGTA CCACCCTTAAtatctcaggaaaaattcctgTCAAGTtaggtactcttagg tgccaaataaatgCCCCCtgccgcttgttaatttttcgaaaattttcaaa ccccctccggaccttattaggaccccccctgtttattaatttttaagaat attttcagttggcaaaaagaagtccccttattttgctccaaaaagcctga ttttagcctatatttaccttatttttgggttttcagaagtacaatttcca accccccagaCTATAAGGTCCCTCCCATTTATTAGAATTTCGAATTTTCA ACCCCCCCttccgtttattcgaaccccctcgccccgtttatttggcacct aagagtaaagtcattttcaagtcaatttttttttaatcaaaagaaagttt caatttgtGAGAGCTACTATGTTCTGAAAACATCCTTCGTGTGCACagag ttgttaaaagcaaactaacttttttaaatgatcaattaggtccataagat cacaaaaacgagGGGTGAGaaaaaatttgaccattttgctggtccccatg tgacgtcatcacttttgctggggcttgaaaatgaaagtgaaaatcagAAG CCcatatatggctcaaatgaaagatatttatccaaggattccaaaaaata tcacaacatatgcctgaaaatcaatatttcagaAGCTATAAAGATAAATA GCtttcaaaatgacgtcaccGATGATGTCATCGATAGtaaaaaaatcgtc aaattcgaaaaatttttgtttcgtttgaaagaagaccatctagtgaacaa aaaatattactacaaaaaaatctgaatttctCCTTATAAGCCCCTGTCAG CAAAtttgtaattcattaaatttgccTGCGAAAGCTTCGGGCACGcccta ggctgcacgcatcccctctgatatgatttgatataggggttgcgtatcgt ctaaaatatttctgtctcaacctttttttcatttttcttttttgattatg cgtcatagcaatacaatgacttctttttttctttgttcaatgaatgaaaa taattatgaaaacaacagcacaatggcttcatttctttctttctttgatt ggatgtgatgaaattatgtaaatttatgcaaattttggttaccccaaatt tgagttaactctcggacgagaatttcatacacgatacgcatcccctataa caaaataaattctggaaATGCGCGAAGCCTAGGCACGCCCAGGAATCTTT AAaaagcttgagagtcaagtcaaACGTATTTAACAGAATAACTTCCTATC AAGTGAAATTCAAGGTTTTccgtagtaatattttttgttcccaagcaggt cctctttcaaatgaaacaaaagtttttcgatttcgatgattttttaattg ccgatgacgtcatcgatgacgtcatttttttagCTATTTTCCTTTATAGC TTATCAAactttcatttgagccatatttgagcttctaattttcactttca ttttcaagccccagcaaaagtgatgacgtcacatgggggccagcaaaatg gtcaaaatttttctcaccactcgtttttatgatcttatagacctaattga tcatttaaaaaagtttttttgcttttaacaaGTTTGTGCACACGAAGAAC AGTGTAGCTCTCActttcaaatttgattgaaaagcTTTCTCTTCAACTCA TTTTCTTGCATATTTTCGTCAAGAGAAagtaaaagaacattttttatgag gcatcaagttagtatctggtactcaaaatcctgcaaaatcacaaaaaatg ttcttttactTTCTCTTGACtaaaaaatgcaagaaaatgaGTTGAAGAGA AAGCTTTTCAACTTAGTATCATgtactaagttgttttttacttGCCTTAT CCGACCACCACCTGGCAATGGCCCCCACACACAACTTAATACCAACCCcc tgtattactttttaattttacttcattgtttcaaaagttgtgttcaattt taaaaatgtcaaagagggtaacttatttctaGCACACTGTTTTGGGTTTG GTCATAAGAAAGACCTCCCAGCCAGGTCATATCAAAGatcataaaattgt tcttgatggcatctctttatgtttattGGAATAATCCGCCTGATATGTGT TAAAACATGATACCATCACAccattttcttttctagatGACACCAAAACT GAAATAACAAACCGTCAAACACATAATGGGCAACTCTAGTGGTAAAGACA GTGTGCCAATCAAACAAGATATTGATGATGGAGAGGATCTATTGGACCTG TCTGGCCCTTGCAAAGTGAAAAATATCCATATTGATGGTCTTAAGAAATC TCGCAATGAATTAGTCACTACAACTTTAGAGGACCTGTTTAAAGCAAATA CCTTTGAAGATGTGATCACCAAAGCTCATTTATGTAAGCTGAAATTGGAA CGATTGAGAGTTTTTTCGAATATTGATGTTTTCATTGATGTGGCGGATGA GTATAGTGACCAACATgagtttgatgttttttatcttGTCAAAGAATCAC GAAGTTTTCAAGCCTCCGTTGGTACTACTGTTGGTAATAATGAAGGTAAT ATGGTGGTGACCGGAGCTGTTAGTAACCTCAAAGGAACTGGTGAATTGGT CAAAGCGAATATCTCTTACGGGACTGCACAGACCACTTCGTATGAATTCT CAATGGGTAAACCAATCGGCTATGATCCAGACAGGAGATTGTCTTTTAAA GTATTGAAATCTATTTCTGATTTGAGTCAATCTTTTTACAAAGATACGAC CAAAGGTCTTGGTCTGGATTTCACTATCCCAAGCTCTATTGGTCTTCATA CTCTTGGATGGGACTTCAATTGGCGTGAAAACAGCGTTTTGCCGTCAGCT CCATTCGAAGTGCGCGAGTTTTCAGGCCATTCTCTCAAATCAACACTGAA GCATTCGTTTGTCAGCGATGGACGTGACGATTGGGTGTTACCTTCACACG GACATTTGTTTAAACATTCAATCGAAGTCAGTGACTTTATCGGAAATGTA CGGGCATGGAAAAGTAATGTCGAGTTGCAACTCAATAAAGAAATCTTCGA CCGAGTTGTGTTGGCGGGCTCCTTCCAAGCTGGCGTTACTCAATCGCTTG ACGATAAACCGCTTATGATCAATGACCGCTTTTTCATCGGTGGTCCTTCT TCTATTCGAGGATACAAATTCAAAGGAATCGGATATCAAGCCGAAGTAGA TGGAATTAATTCGGCAGCACTCGGTGGTGACTTATTCTGGATGTCTGGCC TACATGTCTATACGCCACTTCCGTTTTTGAACTCAGGTAAAGACTCTTTC GGATCATTATTCCGAATGCATTATTTTTTGAATGCTGGTAATCTTACCAA TATGAATCAAATGAATGCTAAAGACTTTGTGATGAACCCTAGATGGTCTT ATGGACTTGGTATAATGTTTATGTTAGGTGGAATGGCTCGTCTAGAGATC AATTATTGCTTACCTAAGAATGGCAGACCTGGTGATCAGATATCTGAAGG ATTCCAAGTTGGAGTTGGTTTGAATTTCCTTTAATGATTTCCCAGAAATT ATCACTCgtcattttgaccattttgaccattttagCGCTTTTTCTCTGAT GGATTACACCCAAATCGGAGTAGGTTAGAATCTATGTTCAAGATTCTGGA AAAAGAGAATACATAATAGATTGCACCTTTACAATCGTCATCGTTTTGAC CATTCTAGctattttatttttctcaacAACAAGTCAAACTTGTCGATATA GTGCTCAAACTTAgcgtttgttgttttttttgtttagtgTATCAAGCCCA ATGTCGATGCTAACGAAGTCTTTAATGATAGAAAAGTTCATTTACTTGCA TTTACTTCAACTTTGTCTCTTGAATACGTTGAAATGAAGTTAGGTCTTTT TCGTGCGagtatattttgaatttaaacttcCCTTATAGTGATCTCAGAAA TTATAAAACTCGTGCTCCGTTCTTCTGATTAGGATGGGTCTAGACTTTGA ATTTTAATGCCTCTTAGATTAGAAactattttttgttcttttttatagtt cttgtttttttcttaGAGTGAGTACTGTATGCAAgtaatttttagaatta ttttgacaatttattatatttttttgaaacaacTAGAAATAAATCATAGG CATTTTGTCCTTTCTCTAGAATCACTGTCTtgctttaaaatatttatatc CAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033631XLOC_033631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053274-exon-scaffold_228-1491911889:176557..176918TCONS_00053274-exon-scaffold_228-1491911889:176557..176918Clytia hemisphaericaexon
TCONS_00053274-exon-scaffold_228-1510915933:176557..176918TCONS_00053274-exon-scaffold_228-1510915933:176557..176918Clytia hemisphaericaexon
TCONS_00053274-exon-scaffold_228-1575043694:176557..176918TCONS_00053274-exon-scaffold_228-1575043694:176557..176918Clytia hemisphaericaexon
TCONS_00053274-exon-scaffold_228-1491911889:183593..185660TCONS_00053274-exon-scaffold_228-1491911889:183593..185660Clytia hemisphaericaexon
TCONS_00053274-exon-scaffold_228-1510915933:183593..185660TCONS_00053274-exon-scaffold_228-1510915933:183593..185660Clytia hemisphaericaexon
TCONS_00053274-exon-scaffold_228-1575043694:183593..185660TCONS_00053274-exon-scaffold_228-1575043694:183593..185660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:176557..185660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2936 14.2514 22.174 24.6046 17.046 16.1217 14.2291 16.5788 6.04573 7.62612 10.4816 9.96699 7.40624 7.68354 7.71871 7.72158 9.11485 7.76044 5.43472 5.98781 11.3738 9.06212 9.04751 13.8755 13.6718 15.8377 12.726 11.0228 11.0946 9.3159
Blast
BLAST of TCONS_00053274 vs. Swiss-Prot (Human)
Match: SAM50 (Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 2.824e-96
Identity = 178/448 (39.73%), Postives = 260/448 (58.04%), Query Frame = 3
Query:  438 KQDIDDGEDLLDLSGPCKVKNIHIDGLKKSRNELVTTTLEDLFKANTFEDVITKAHLCKLKLERLRVFSNIDVFIDVAD-EYSDQHEFDVFYLVKESRSFQASVGTTVGNNEGNMVVTGAVSNLKGTGELVKANISYGTAQTTSYEFSMGKPIGYDPDRRLSFKVLKSISDLSQSFYKDTTKGLGLDFTIPSSIGLHTLGWDFNWRENSVLP-SAPFEVREFSGHSLKSTLKHSFVSDGRDDWVLPSHGHLFKHSIEVSDFIG-NVRAWKSNVELQLNKEIFDRVVLAGSFQAGVTQSLDDKPLMINDRFFIGGPSSIRGYKFKGIGYQAEVDGINSAALGGDLFWMSGLHVYTPLPFLNSGKDSFGSLFRMHYFLNAGNLTNMN-----QMNAKDFVMNPRWSYGLGIMFMLGGMARLEINYCLPKNGRPGDQISEGFQVGVGLNFL 1757
            KQ+I + +D++       V+++H DGL +++++++   + D+FKA    +V+ K+H  + KL RL +F  +DV ID    + +  +  DV + V E R    S  T VGNNEG+MV+   + NL G  E V    SYGT +T SY  S  KP   + +R  S  + K       S  ++T +G+  +++ P     HT+ W+  WRE   L  +A F VR+ SGHSLKS+L H+ V D R+  +LP  G L K + E++ + G +V   K + ELQLNK++    V + SF  G+   + DKP  I DRF++GGP+SIRG+    IG Q+E D      LGG+ +W  GLH+YTPLPF   G+  FG LFR H+FLNAGNL N+N     + + +      RWSYG GI+  LG +ARLE+NYC+P   + GD+I +G Q G G+ FL
Sbjct:   36 KQEILENKDVV-------VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKET-SYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGD-----YLGGEAYWAGGLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL 469          
The following BLAST results are available for this feature:
BLAST of TCONS_00053274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAM502.824e-9639.73Sorting and assembly machinery component 50 homolo... [more]
back to top