TCONS_00053259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053259
Unique NameTCONS_00053259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=transcript|length=1186bp
GAATTAGTTAACGTAAATATTATACAGAATAGCGTGAAAATTATCTAATG
AAGTTAGcctaaaaatatcaaataagaaaaaaatagagGCGAGTGGctag
caaaaaaagtgaaaattaggAGGTACAACAACtcatattttttctcaaaa
agttgCACAACTCCAATAAAAAAGGGTAAGATACAAGTATACTGGATATA
AAACGTAATATAaatcatcaaaataacaaaCTGATTATTTCTATAAATGA
AAGAatgcaagaaaaaaagaaattggcaAGGATGAATAACTAAGACAACT
GACAATGTCTGGCATGTATTGGTCACCATATTGTGAAATCATTCTAAAAA
TAGTTCTATCTTTTAACCGTACATTTACTTTCATGATGTTCTTTGTACTT
AAGTGTTTTGTATCTCTTTAAGTAGTGCCTGTAAAGCCATATTCTGATGT
CTTTGCCTGGTGTACTTTTACAACGTGATTCATGCTTTTTCAAAGTTCAG
GGATAAACGAAAGGGAGTGTTGCAATGCTTGCAAATCAATGGATTAATtg
aatgttcttttcttttatggAGAATTAGTTTTTGATTACTTGTAAAACTT
AAGTCGCAATGCCGACATTTGTGTAGTACGCCAGGAAAGTCTTTGGATTT
CTGATGGTACTTCAACCCGTTTTGAGACTTAAAAACTTTTGAGCAATCCG
TACAATTCCATGTTAAACCTTCGTGGGCAACTTTAATATGACAATTAAGT
TCATAATTTCCGCAAAATCGCTTGTCACATTTATGGCAGCCGGCAGTCTC
GTCGNAACTTTAATATGACAGTTAAGTTCATAATTTCCGCGAAATCGCTT
GTCACATTTATGGCAGCCGGCAGTCCCGTCATCCTCAGTTTTGTGTTTCA
TTAAGTGATCGATTGATGATTCATGAGAAATTCGTTCACCACAAAAGGCA
CAAATAGGCATCATGAATTCTATTTTGTGtattatatttctatgtttttg
tttcctgAGAAGAGAAAAAGCCATGGAATATTAGATCATAAAACAATGTG
GATAAAACtcctaaaattttccaaaatatttttgtctcgTTTCAATGCTC
CAAAAATGTAACTTTGTTAAGTTCAAGAGTCTTCAAATTTTAAGGCAAAT
GATCACGTTTAAGTGATAATTTCAAGACAGTCGTTt
Run BLAST on NCBI

protein sequence of TCONS_00053259-protein

>TCONS_00053259-protein ID=TCONS_00053259-protein|Name=TCONS_00053259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MAFSLLRKQKHRNIIHKIEFMMPICAFCGERISHESSIDHLMKHKTEDDG
TAGCHKCDKRFRGNYELNCHIKVXTRLPAAINVTSDFAEIMNLIVILKLP
TKV
Run BLAST on NCBI

transcript from alignment at scaffold_227:162014..163199

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at scaffold_227:162014..163199 (Clytia hemisphaerica)
aAACGACTGTCTTGAAATTATCACTTAAACGTGATCATTTGCCTTAAAAT TTGAAGACTCTTGAACTTAACAAAGTTACATTTTTGGAGCATTGAAAcga gacaaaaatattttggaaaattttaggaGTTTTATCCACATTGTTTTATG ATCTAATATTCCATGGCTTTTTCTCTTCTcaggaaacaaaaacatagaaa tataataCACAAAATAGAATTCATGATGCCTATTTGTGCCTTTTGTGGTG AACGAATTTCTCATGAATCATCAATCGATCACTTAATGAAACACAAAACT GAGGATGACGGGACTGCCGGCTGCCATAAATGTGACAAGCGATTTCGCGG AAATTATGAACTTAACTGTCATATTAAAGTTNCGACGAGACTGCCGGCTG CCATAAATGTGACAAGCGATTTTGCGGAAATTATGAACTTAATTGTCATA TTAAAGTTGCCCACGAAGGTTTAACATGGAATTGTACGGATTGCTCAAAA GTTTTTAAGTCTCAAAACGGGTTGAAGTACCATCAGAAATCCAAAGACTT TCCTGGCGTACTACACAAATGTCGGCATTGCGACTTAAGTTTTACAAGTA ATCAAAAACTAATTCTccataaaagaaaagaacattcaATTAATCCATTG ATTTGCAAGCATTGCAACACTCCCTTTCGTTTATCCCTGAACTTTGAAAA AGCATGAATCACGTTGTAAAAGTACACCAGGCAAAGACATCAGAATATGG CTTTACAGGCACTACTTAAAGAGATACAAAACACTTAAGTACAAAGAACA TCATGAAAGTAAATGTACGGTTAAAAGATAGAACTATTTTTAGAATGATT TCACAATATGGTGACCAATACATGCCAGACATTGTCAGTTGTCTTAGTTA TTCATCCTtgccaatttctttttttcttgcatTCTTTCATTTATAGAAAT AATCAGtttgttattttgatgattTATATTACGTTTTATATCCAGTATAC TTGTATCTTACCCTTTTTTATTGGAGTTGTGcaactttttgagaaaaaat atgaGTTGTTGTACCTcctaattttcactttttttgctagCCACTCGCct ctatttttttcttatttgatatttttaggCTAACTTCATTAGATAATTTT CACGCTATTCTGTATAATATTTACGTTAACTAATTC

Coding sequence (CDS) from alignment at scaffold_227:162014..163199

>TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_227:162014..163199 (Clytia hemisphaerica)
ATGGCTTTTTCTCTTCTcaggaaacaaaaacatagaaatataataCACAA
AATAGAATTCATGATGCCTATTTGTGCCTTTTGTGGTGAACGAATTTCTC
ATGAATCATCAATCGATCACTTAATGAAACACAAAACTGAGGATGACGGG
ACTGCCGGCTGCCATAAATGTGACAAGCGATTTCGCGGAAATTATGAACT
TAACTGTCATATTAAAGTTNCGACGAGACTGCCGGCTGCCATAAATGTGA
CAAGCGATTTTGCGGAAATTATGAACTTAATTGTCATATTAAAGTTGCCC
ACGAAGGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033621XLOC_033621Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053259-proteinTCONS_00053259-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053259-exon-scaffold_227-1491911889:162014..163199TCONS_00053259-exon-scaffold_227-1491911889:162014..163199Clytia hemisphaericaexon
TCONS_00053259-exon-scaffold_227-1510915933:162014..163199TCONS_00053259-exon-scaffold_227-1510915933:162014..163199Clytia hemisphaericaexon
TCONS_00053259-exon-scaffold_227-1575043694:162014..163199TCONS_00053259-exon-scaffold_227-1575043694:162014..163199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:162014..163199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34257 2.51468 1.64103 0.942462 0.29382 0.348271 0.825678 1.00526 1.00981 0.720163 0.515058 0.875283 0.41056 0.744486 0.309295 0.265537 0.6815 0.522457 0.347413 0.121181 1.49901 1.83145 1.82348 1.65905 0.350888 0.278364 1.03749 0.797094 1.0795 1.44813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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