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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=transcript|length=1186bp GAATTAGTTAACGTAAATATTATACAGAATAGCGTGAAAATTATCTAATG AAGTTAGcctaaaaatatcaaataagaaaaaaatagagGCGAGTGGctag caaaaaaagtgaaaattaggAGGTACAACAACtcatattttttctcaaaa agttgCACAACTCCAATAAAAAAGGGTAAGATACAAGTATACTGGATATA AAACGTAATATAaatcatcaaaataacaaaCTGATTATTTCTATAAATGA AAGAatgcaagaaaaaaagaaattggcaAGGATGAATAACTAAGACAACT GACAATGTCTGGCATGTATTGGTCACCATATTGTGAAATCATTCTAAAAA TAGTTCTATCTTTTAACCGTACATTTACTTTCATGATGTTCTTTGTACTT AAGTGTTTTGTATCTCTTTAAGTAGTGCCTGTAAAGCCATATTCTGATGT CTTTGCCTGGTGTACTTTTACAACGTGATTCATGCTTTTTCAAAGTTCAG GGATAAACGAAAGGGAGTGTTGCAATGCTTGCAAATCAATGGATTAATtg aatgttcttttcttttatggAGAATTAGTTTTTGATTACTTGTAAAACTT AAGTCGCAATGCCGACATTTGTGTAGTACGCCAGGAAAGTCTTTGGATTT CTGATGGTACTTCAACCCGTTTTGAGACTTAAAAACTTTTGAGCAATCCG TACAATTCCATGTTAAACCTTCGTGGGCAACTTTAATATGACAATTAAGT TCATAATTTCCGCAAAATCGCTTGTCACATTTATGGCAGCCGGCAGTCTC GTCGNAACTTTAATATGACAGTTAAGTTCATAATTTCCGCGAAATCGCTT GTCACATTTATGGCAGCCGGCAGTCCCGTCATCCTCAGTTTTGTGTTTCA TTAAGTGATCGATTGATGATTCATGAGAAATTCGTTCACCACAAAAGGCA CAAATAGGCATCATGAATTCTATTTTGTGtattatatttctatgtttttg tttcctgAGAAGAGAAAAAGCCATGGAATATTAGATCATAAAACAATGTG GATAAAACtcctaaaattttccaaaatatttttgtctcgTTTCAATGCTC CAAAAATGTAACTTTGTTAAGTTCAAGAGTCTTCAAATTTTAAGGCAAAT GATCACGTTTAAGTGATAATTTCAAGACAGTCGTTt Run BLAST on NCBI protein sequence of TCONS_00053259-protein >TCONS_00053259-protein ID=TCONS_00053259-protein|Name=TCONS_00053259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MAFSLLRKQKHRNIIHKIEFMMPICAFCGERISHESSIDHLMKHKTEDDG TAGCHKCDKRFRGNYELNCHIKVXTRLPAAINVTSDFAEIMNLIVILKLP TKV Run BLAST on NCBI transcript from alignment at scaffold_227:162014..163199 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at scaffold_227:162014..163199 (Clytia hemisphaerica) aAACGACTGTCTTGAAATTATCACTTAAACGTGATCATTTGCCTTAAAAT
TTGAAGACTCTTGAACTTAACAAAGTTACATTTTTGGAGCATTGAAAcga
gacaaaaatattttggaaaattttaggaGTTTTATCCACATTGTTTTATG
ATCTAATATTCCATGGCTTTTTCTCTTCTcaggaaacaaaaacatagaaa
tataataCACAAAATAGAATTCATGATGCCTATTTGTGCCTTTTGTGGTG
AACGAATTTCTCATGAATCATCAATCGATCACTTAATGAAACACAAAACT
GAGGATGACGGGACTGCCGGCTGCCATAAATGTGACAAGCGATTTCGCGG
AAATTATGAACTTAACTGTCATATTAAAGTTNCGACGAGACTGCCGGCTG
CCATAAATGTGACAAGCGATTTTGCGGAAATTATGAACTTAATTGTCATA
TTAAAGTTGCCCACGAAGGTTTAACATGGAATTGTACGGATTGCTCAAAA
GTTTTTAAGTCTCAAAACGGGTTGAAGTACCATCAGAAATCCAAAGACTT
TCCTGGCGTACTACACAAATGTCGGCATTGCGACTTAAGTTTTACAAGTA
ATCAAAAACTAATTCTccataaaagaaaagaacattcaATTAATCCATTG
ATTTGCAAGCATTGCAACACTCCCTTTCGTTTATCCCTGAACTTTGAAAA
AGCATGAATCACGTTGTAAAAGTACACCAGGCAAAGACATCAGAATATGG
CTTTACAGGCACTACTTAAAGAGATACAAAACACTTAAGTACAAAGAACA
TCATGAAAGTAAATGTACGGTTAAAAGATAGAACTATTTTTAGAATGATT
TCACAATATGGTGACCAATACATGCCAGACATTGTCAGTTGTCTTAGTTA
TTCATCCTtgccaatttctttttttcttgcatTCTTTCATTTATAGAAAT
AATCAGtttgttattttgatgattTATATTACGTTTTATATCCAGTATAC
TTGTATCTTACCCTTTTTTATTGGAGTTGTGcaactttttgagaaaaaat
atgaGTTGTTGTACCTcctaattttcactttttttgctagCCACTCGCct
ctatttttttcttatttgatatttttaggCTAACTTCATTAGATAATTTT
CACGCTATTCTGTATAATATTTACGTTAACTAATTC Coding sequence (CDS) from alignment at scaffold_227:162014..163199 >TCONS_00053259 ID=TCONS_00053259|Name=TCONS_00053259|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_227:162014..163199 (Clytia hemisphaerica) ATGGCTTTTTCTCTTCTcaggaaacaaaaacatagaaatataataCACAA AATAGAATTCATGATGCCTATTTGTGCCTTTTGTGGTGAACGAATTTCTC ATGAATCATCAATCGATCACTTAATGAAACACAAAACTGAGGATGACGGG ACTGCCGGCTGCCATAAATGTGACAAGCGATTTCGCGGAAATTATGAACT TAACTGTCATATTAAAGTTNCGACGAGACTGCCGGCTGCCATAAATGTGA CAAGCGATTTTGCGGAAATTATGAACTTAATTGTCATATTAAAGTTGCCC ACGAAGGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053259-exon-scaffold_227-1491911889:162014..163199 | TCONS_00053259-exon-scaffold_227-1491911889:162014..163199 | Clytia hemisphaerica | exon |
TCONS_00053259-exon-scaffold_227-1510915933:162014..163199 | TCONS_00053259-exon-scaffold_227-1510915933:162014..163199 | Clytia hemisphaerica | exon |
TCONS_00053259-exon-scaffold_227-1575043694:162014..163199 | TCONS_00053259-exon-scaffold_227-1575043694:162014..163199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_227 | supercontig | scaffold_227:162014..163199 . |
Blast
The following BLAST results are available for this feature:
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